Version 2.77

Term Description

This term is used to report the mutation(s) identified within the S (spike) gene of SARS coronavirus 2 (SARS-CoV-2) by molecular methods. For reporting the SARS-CoV-2 variant strain identified, various codes are available in LOINC depending on the nomenclature used. For the most general code (nomenclature unspecified), use SARS-CoV-2 (COVID-19) variant [Type] in Specimen [LOINC: 96741-4]. To report the lineage for the variant, use SARS-CoV-2 (COVID-19) lineage [Type] in Specimen [LOINC: 96895-8]. To report the clade for the variant, use SARS-CoV-2 (COVID-19) clade [Type] in Specimen [LOINC: 96896-6].
Source: Regenstrief LOINC

Reference Information

Type Source Reference
Webcontent Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. Coronavirus (COVID-19) Testing

Fully-Specified Name

Component
SARS coronavirus 2 S gene mutation detected
Property
Prid
Time
Pt
System
XXX
Scale
Nom
Method
Molgen

Additional Names

Short Name
SARS-CoV-2 S gene mut Spec
Display Name
SARS-CoV-2 (COVID-19) S gene mutation detected Molgen Nom (Specimen)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) S gene mutation detected, Specimen

Example Answer List: LL5775-3

Source: LOINC
Answer Code Score Answer ID
D614G LA31603-6
N501Y LA31604-4
K417N LA31605-1
E484K LA31606-9

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.74
Change Reason
Release 2.74: ORDER_OBS: Updated to both an order and an observation for panel inclusion and representation as an order. ;
Order vs. Observation
Both

Member of these Panels

LOINC Long Common Name
96894-1 SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Member of these Groups Get Info

LOINC Group Group Name
LG51017-8 SARSCoV2 detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) SARS-Coronavirus 2 S-Genmutation entdeckt:Nachweis oder Identität:Zeitpunkt:XXX:Nominal:Molekulargenetisch
es-ES Spanish (Spain) Mutación detectada en el gen S del SARS-CoV-2 (COVID-19):Presencia o identidad:Punto temporal:XXX:Nom:Genética molecular
es-MX Spanish (Mexico) Se detectó una mutación del gen S del coronavirus 2 del SARS:Orgullo:Punto temporal:No especificado:Nominal:Molgen
fr-FR French (France) Coronavirus SARS-CoV-2 gène mutation détectée:Identification:Ponctuel:Milieux divers:Résultat nominal:Biologie moléculaire
it-IT Italian (Italy) SARS coronavirus 2, mutazione identificata del gene S:Prid:Pt:XXX:Nom:Molgen
Synonyms: Coronavirus della SARS Gene S di SARS-CoV-2 (COVID-19) Genetica molecolare Microbiologia Mutazione del gene S di SARS coronavirus 2;mutazione del gene S di SARS-CoV-2 (COVID-19) Mutazione identificata del gene S di SARS coronavirus 2;mutazione identificata del gene S di SARS-CoV-2 (COVID-19) Presenza o Identità Punto nel tempo (episodio) SARS-CoV-2 (COVID-19)
nl-NL Dutch (Netherlands) SARS-CoV-2 E-gen gedecteerde mutatie:identificator:moment:XXX:nominaal:moleculair genetisch onderzoek
Synonyms: molgen SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
pl-PL Polish (Poland) Rozpoznana mutacja genu S SARS-CoV-2:wykrycie lub identyfikacja:punkt w czasie:XXX:cecha:genetyka molekularna
Synonyms: Koronawirus
zh-CN Chinese (China) 所检出的 SARS 冠状病毒 2 S 基因突变:存在与否或特征标识:时间点:XXX:名义型:分子遗传学类实验室方法
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II S 型 SARS 冠状病毒 2 S 基因突变;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分子遗传学;分子遗传学方法;分子遗传学类方法;分子遗传学类检验方法;包括 RFL、PCR 及其他方法在内,用于在分子基础上检测遗传属性的方法的大类;聚合酶链反应;聚合酶链式反应 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 所检出的(所发现的、所检测出的) SARS 冠状病毒 2 S 基因突变;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 时刻;随机;随意;瞬间 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96751-3