LOINC
Version 2.72

75674-2Deprecated Acinetobacter sp (rpsA) gene [Presence] by Nucleic acid capture and probe detection in Positive blood cultureDeprecated

Status Information

Status
Deprecated
Reason
Duplicate
Comment
The "Probe.mag capture" Method has been deprecated and replaced with the more general "Probe" Method since the "mag capture" portion represents how the nucleic acids are isolated, which is not a distinction made in the LOINC Method for molecular tests. Given that updating the Method would change the meaning of the term, a new term was created to replace the existing term as recommended by the Special Topics workgroup on PCR-based Methods and approved by the LOINC Lab Committee at the June 2017 meeting.
Map-To Long Common Name Mapping Guidance
88244-9 Acinetobacter sp rpsA gene [Presence] by Probe in Positive blood culture

Term Description

Magnetic beads and fluorescent probes are used to capture and detect targeted nucleic acid sequences specific to Acinetobacter species within the rpsA gene in positive blood culture. The rpsA gene encodes the "30S ribosomal protein S1".
Source: Regenstrief LOINC

Part Descriptions

LP185690-7   Acinetobacter sp (rpsA) gene
Acinetobacter is a group of gram negative bacteria found in soil and water and a common source of infection in patients, primarily in intensive care units and healthcare settings with very ill patients. Among the Acinetobacter species, Acinetobacter baumannii accounts for about 80% of reported infections. Symptoms range from pneumonia to serious blood or wound infections. Acinetobacter-related infections rarely occur outside of healthcare settings. Acinetobacter species are resistant to many classes of antibiotics, so treatment is determined on a case-by-case basis. Source: Centers for Disease Control and Prevention, Acinetobacter

LP183540-6   Probe.mag capture
Nucleic acid is first concentrated and purified using a bead-based method, followed by a oligonucleotide probe detection of sequence of interest with signal enhancement. Source: Regenstrief LOINC, Acinetobacter

Fully-Specified Name

Component
Acinetobacter sp (rpsA) gene
Property
PrThr
Time
Pt
System
Bld.pos growth
Scale
Ord
Method
Probe.mag capture

Additional Names

Short Name
Deprecated Acinetobacter sp rpsA Bld Pos Ql Prb Mag
Display Name
Acinetobacter sp rpsA gene Nucleic acid capture and probe detection Ql (Pos bld culture)
Consumer Name Alpha
Acinetobacter species rpsA gene, Infected blood

Example Answer List LL744-4

Source: Regenstrief Institute

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.50
Last Updated
Version 2.63
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation

Language Variants Get Info

zh-CNChinese (China)
不动杆菌属 (rpsA) 基因:存在情况或阈值:时间点:血液.生长阳性:序数型:探针.磁捕获
fr-FRFrench (France)
Acinetobacter rpsA gène:Présence/Seuil:Ponctuel:Hémoculture positive:Qualitatif:Sonde de capture magnétique
it-ITItalian (Italy)
Acinetobacter sp (rpsA) gene:PrThr:Pt:Emocolture positive:Ord:Sonda.cattura mag
es-MXSpanish (Mexico)
Gen de Acinetobacter sp (rpsA):Presencia o umbral:Punto temporal:Hemocultivo positivo:Ordinal:Hibridación de captura magnética
es-ESSpanish (Spain)
gen (rpsA) Acinetobacter sp:PrThr:Punto temporal:Sangre crecimiento positivo:Ord:Hibridación por capturas magnéticas

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=75674-2