LOINC
Version 2.67

76338-3Porcine epidemic diarrhea virus RNA [Presence] in Unspecified specimen by NAA with probe detectionActive

Term Description

This virus only affects pigs. Testing can be performed on either biological or environmental samples including oral fluid, feces, dirt and others.
Source: Regenstrief LOINC

Part Description

LP182479-8   Porcine epidemic diarrhea virus
Porcine Epidemic Diarrhea Virus (PEDv) is a large-enveloped RNA virus, which is a member of the genus Alphacoronavirus within the Coronaviridae family. The complete PEDv genome consists of 5 gene segments: open reading frame 1 (ORF1), spike (S), envelope (E), membrane (M), and nucleocapsid (N). It is encapsulated by a single N protein. The S protein contributes to the stimulation of neutralizing antibodies in the infected host. Its association to adapted growth in vitro and attenuation in vivo lends itself to use for genetic comparison among PEDV isolates and effective vaccines. The M protein is required for assembly and can also induce the production of virus-neutralizing antibodies. The E protein contributes to coronavirus budding. The N protein has functions associated with viral replication and pathogenesis.
PEDv causes viral enteritis, which leads to the destruction of villus enterocytes in pigs of all ages. It is spread by the ingestion of feces from infected pigs, resulting in vomiting, watery diarrhea, dehydration, and high mortality, especially in nursery piglets. Disease caused by PEDv is clinically similar to that caused by Transmissible gastroenteritis coronavirus (TGEV) [PMID: 26689811]
At least two PEDv strains have been identified in the USA: the US PEDv prototype and S INDEL variant. The INDEL variant PEDv strain has insertions and deletions (INDELs) in the spike (S) gene. [PMID: 25279722] The INDEL strain is related to milder clinical signs than prototype strains. [PMID: 24750580] [PMID: 26748596] The genomic differences in the S gene between the US PEDv prototype and INDEL variant may be responsible for the virulence differences. Potential targets when testing for PEDv RNA include the nucleocapsid protein (N) gene and the ~2500 bp fragment of the S-gene. Source: Regenstrief LOINC

Fully-Specified Name

Component
Porcine epidemic diarrhea virus RNA
Property
PrThr
Time
Pt
System
XXX
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
PEDv RNA XXX Ql NAA+probe
Display Name
Porcine epidemic diarrhea virus RNA NAA+probe Ql (Unsp spec)

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.52
Last Updated
Version 2.63
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Both

Example Answer List LL360-9

Source: Regenstrief Institute

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Language Variants Get Info

zh-CNChinese (CHINA)
猪流行性腹泻病毒 RNA:存在情况或阈值:时间点:XXX:序数型:探针法.基因扩增.靶向
nl-NLDutch (NETHERLANDS)
Varkens epidemic diarrhea virus RNA:aanwezigheid:moment:XXX:ordinaal:moleculaire techniek (PCR)
it-ITItalian (ITALY)
Virus della diarrea epidemica suina , RNA:PrThr:Pt:XXX:Ord:Sonda.amp.tar
ru-RURussian (RUSSIAN FEDERATION)
Свиная эпидемическая диаррея вирус РНК:PrThr:ТчкВрм:XXX:Пор:Проба.усил.миш
es-ESSpanish (SPAIN)
Virus de la diarrea epidémica porcina RNA:PrThr:Punto temporal:XXX:Ord:Sonda con amplificación dirigida
tr-TRTurkish (TURKEY)
Porsin epidemik diyare virüsü RNA:MevcEşik:Zmlı:XXX:Srl:Prob.amf.hdf

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=76338-3