LOINC
Version 2.67

76584-2Enterococcus faecalis cpn60 gene [Presence] in XXX.swab by NAA with probe detectionActive

Term Description

This term was created for, but is not limited in use to, Pathogenius Laboratories' Level 1 Wound and/or ENT test panels, which use quantitative PCR to identify commonly-found microorganisms in wound or ear, nose, and throat samples, respectively.
Source: Regenstrief LOINC

Part Description

LP185689-9   Enterococcus faecalis cpn60 gene
Enterococci species are common pathogens in hospital-acquired infections, including urinary tract infections and surgical wound infections. The sodA gene is conserved across enterococcus species, but the variability of a specific internal sodA sequence can be used to differentiate between enterococcus species. A particular sodA sequence identifies Enterococcus faecium, and the identification of this sequence in a clinical specimen can be used to identify E faecium as the pathogen responsible for a particular infection. [PMID: 10618129] Likewise, the cpn60 gene is conserved across many bacterial genera, but it also contains an internal sequence with enough variation to distinguish among different enterococcus species. Identification of a particular cpn60 sequence in a clinical specimen has been used to identify Enterococcus faecalis as a causative infectious organism. [PMID: 11060051] Source: Regenstrief LOINC, PMID: 10618129

Fully-Specified Name

Component
Enterococcus faecalis cpn60 gene
Property
PrThr
Time
Pt
System
XXX.swab
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
E faecal cpn60 XXX.swab Ql NAA+probe
Display Name
E. faecalis cpn60 gene NAA+probe Ql (Unsp swab)

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.52
Last Updated
Version 2.63
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation

Example Answer List LL2994-3

Source: Bioinfomatics Research and Testing Laboratory

Answer Code Score Answer ID
Low (< 10^5 bacteria) LA21375-3
Medium (10^5-10^7 bacteria) LA21374-6
High (> 10^7 bacteria) LA21373-8

Member of these Panels

LOINC Long Common Name
76585-9 Wound microorganism gene identification panel by NAA with probe detection

Language Variants Get Info

zh-CNChinese (CHINA)
粪肠球菌 cpn60 基因:存在情况或阈值:时间点:XXX.拭子:序数型:探针法.基因扩增.靶向
fr-FRFrench (FRANCE)
Enterococcus faecalis cpn60 gene:PrThr:Pt:XXX.swab:Ord:Probe.amp.tar
it-ITItalian (ITALY)
Enterococcus faecalis cpn60, gene:PrThr:Pt:XXX.tampone:Ord:Sonda.amp.tar
es-ESSpanish (SPAIN)
gen cpn60 Enterococcus faecalis:PrThr:Punto temporal:Escobillon XXX:Ord:Sonda con amplificación dirigida
tr-TRTurkish (TURKEY)
Enterococcus faecalis cpn60 geni:MevcEşik:Zmlı:XXX.sürüntü:Srl:Prob.amf.hdf

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=76584-2