LOINC
Version 2.67

79381-0Gastrointestinal pathogens panel - Stool by NAA with probe detectionActive

Term Description

This panel includes terms used to report the detection of various enteric pathogens in stool based on specific nucleic acid targets for each organism. The targeted pathogens and detection rate may vary across test kits and for a single test kit over time. This panel was originally created for, but is not limited in use to, the following submitter test kits: Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test and Luminex xTag GI pathogens panel.
At the time this panel was created, the Verigene kit detected the following pathogens: Campylobacter sp (fusA gene) [LOINC: 79382-8], Salmonella sp ( rpoD gene) [LOINC: 79383-6], Shigella sp (ipaH gene) [LOINC: 70242-3], Vibrio cholera and parahaemolyticus sp (rfbL+trkH+tnaA genes) [LOINC: 79384-4], Yersinia enterocolitica (recN gene) [LOINC: 79385-1], E. coli shiga-like toxin 1 & 2 (stx1 & stx2 genes) [LOINC: 79386-9][LOINC:79387-7], Norovirus I+II (orf1-orf2 junction region) [LOINC: 79388-5], Rotavirus A (nsp5 gene) [LOINC: 79389-3].
The xTAG kit included the following pathogens: Adenovirus F(40+41) (fiber protein gene) [LOINC: 80674-5], E. coli (O157 rfbE gene) [LOINC: 80676-0], ETEC (eltA+estB genes) [LOINC: 80677-8], E. coli shiga-like toxin 1+2 (stx1+stx2 genes) [LOINC: 80679-4], Shigella sp (ipaH gene) [LOINC: 70242-3], C. parvum+hominis (COWP gene) [LOINC: 80681-0], E. histolytica (18S rRNA) [LOINC: 80682-8], G. lamblia (18S rRNA) [LOINC: 80683-6], Campylobacter sp (16S rRNA) [LOINC: 80684-4], C. difficile toxin A+B (tcdA+tcdB genes) [LOINC: 80685-1], Norovirus I+II (orf1-orf2 junction region) [LOINC: 79388-5], Rotavirus A (VP6 gene) [LOINC: 80675-2], Salmonella sp (invA+fliC genes) [LOINC: 80678-6], and Vibrio cholerae (ctxA gene) [LOINC: 80680-2].
Source: Regenstrief LOINC

Panel Hierarchy
Details for each LOINC in Panel LHC-Forms

LOINC Name R/O/C Cardinality Example UCUM Units
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection
Indent92695-6 Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection
IndentIndent80684-4 Campylobacter coli+jejuni+lari 16S rRNA [Presence] in Stool by NAA with probe detection
IndentIndent79382-8 Campylobacter coli+jejuni+lari fusA gene [Presence] in Stool by NAA with probe detection
IndentIndent81656-1 Campylobacter coli+jejuni tuf gene [Presence] in Stool by NAA with probe detection
IndentIndent80685-1 Clostridioides difficile toxin A+B tcdA+tcdB genes [Presence] in Stool by NAA with probe detection
IndentIndent80677-8 Escherichia coli enterotoxigenic eltA+estB genes [Presence] in Stool by NAA with probe detection
IndentIndent80676-0 Escherichia coli O157 rfbE gene [Presence] in Stool by NAA with probe detection
IndentIndent79386-9 Escherichia coli Stx1 toxin stx1 gene [Presence] in Stool by NAA with probe detection
IndentIndent79387-7 Escherichia coli Stx2 toxin stx2 gene [Presence] in Stool by NAA with probe detection
IndentIndent80679-4 Escherichia coli Stx1 and Stx2 toxin stx1+stx2 genes [Presence] in Stool by NAA with probe detection
IndentIndent81285-9 Escherichia coli Stx1 and Stx2 toxin stx1 and stx2 genes [Identifier] in Stool by NAA with probe detection
IndentIndent70296-9 Plesiomonas shigelloides DNA [Presence] in Stool by NAA with probe detection
IndentIndent80678-6 Salmonella sp invA+fliC genes [Presence] in Stool by NAA with probe detection
IndentIndent79383-6 Salmonella sp rpoD gene [Presence] in Stool by NAA with probe detection
IndentIndent81657-9 Salmonella sp spaO gene [Presence] in Stool by NAA with probe detection
IndentIndent70242-3 Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection
IndentIndent80680-2 Vibrio cholerae toxin ctxA gene [Presence] in Stool by NAA with probe detection
IndentIndent79384-4 Vibrio cholerae+parahaemolyticus rfbL+trkH+tnaA genes [Presence] in Stool by NAA with probe detection
IndentIndent92686-5 Vibrio cholerae+parahaemolyticus+vulnificus DNA [Presence] in Stool by NAA with probe detection
IndentIndent79385-1 Yersinia enterocolitica recN gene [Presence] in Stool by NAA with probe detection
Indent92697-2 Gastrointestinal parasitic pathogens panel - Stool by NAA with probe detection
IndentIndent80681-0 Cryptosporidium parvum+hominis oocyst wall protein COWP gene [Presence] in Stool by NAA with probe detection
IndentIndent80682-8 Entamoeba histolytica 18S rRNA [Presence] in Stool by NAA with probe detection
IndentIndent80683-6 Giardia lamblia 18S rRNA [Presence] in Stool by NAA with probe detection
Indent92696-4 Gastrointestinal viral pathogens panel - Stool by NAA with probe detection
IndentIndent92690-7 Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection
IndentIndent80674-5 Adenovirus 40+41fiber protein gene [Presence] in Stool by NAA with probe detection
IndentIndent92691-5 Astrovirus RNA [Presence] in Stool by NAA with probe detection
IndentIndent92692-3 Norovirus genogroup I+II RNA [Presence] in Stool by NAA with probe detection
IndentIndent79388-5 Norovirus genogroup I+II orf1-orf2 junction region [Presence] in Stool by NAA with probe detection
IndentIndent92693-1 Rotavirus A RNA [Presence] in Stool by NAA with probe detection
IndentIndent79389-3 Rotavirus A nsp5 gene [Presence] in Stool by NAA with probe detection
IndentIndent80675-2 Rotavirus A VP6 gene [Presence] in Stool by NAA with probe detection
IndentIndent92694-9 Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection
Indent79390-1 Gastrointestinal pathogens identified in Stool by NAA with probe detection

Fully-Specified Name

Component
Gastrointestinal pathogens panel
Property
-
Time
Pt
System
Stool
Scale
-
Method
Probe.amp.tar

Additional Names

Short Name
GI pathogens Pnl Stl NAA+probe
Display Name
Gastrointestinal pathogens panel NAA+probe (Stl)

Basic Attributes

Class
PANEL.MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.63
Change Reason
Changed "Enteric" in Component to "Gastrointestinal", the more commonly used term.
Order vs. Observation
Order
Panel Type
Panel

Language Variants Get Info

zh-CNChinese (CHINA)
胃肠道病原体类组套:-:时间点:大便:-:探针法.基因扩增.靶向
nl-NLDutch (NETHERLANDS)
gastro-intestinale pathogenen panel:-:moment:feces:-:moleculaire techniek (PCR)
fr-FRFrench (FRANCE)
Gastrointestinal pathogens panel:-:Pt:Stool:-:Probe.amp.tar
it-ITItalian (ITALY)
Patogenie gastrointestinali,panel:-:Pt:Feci:-:Sonda.amp.tar
es-ESSpanish (SPAIN)
Panel de Patógenos intestinales:Propiedades mixtas (sólo paneles):Punto temporal:Heces:-:Sonda con amplificación dirigida

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=79381-0