LOINC
Version 2.72

80348-6Escherichia coli enteropathogenic eae gene [Presence] in Stool by NAA with non-probe detectionActive

Term Description

This assay detects the Escherichia coli enteropathogenic eae gene using PCR and melt curve analysis. This term was created for, but is not limited in use to, BioFire's FilmArray Gastrointestinal panel, which is intended for the detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples from individuals with signs and/or symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Description

LP200471-3   Escherichia coli enteropathogenic eae gene
Escherichia coli (EC) is a gram-negative, flagellated, rod-shaped bacterium. [https://vetmed.iastate.edu/vdpam/FSVD/swine/index-diseases/colibacillosis] The human gastrointestinal (GI) tract is colonized by EC within hours of birth. The natural barriers of the GI tract prevent infection by symbiotic EC except when they break down such as in peritonitis. EC occupy the mucous layer of the mammalian colon and is the most numerous anaerobe of the intestinal microflora. Some strains of EC have evolved virulence factors that precipitate serious disease including enteric diarrhea, urinary tract infections, sepsis and meningitis. The intestinal pathogens of EC include six pathotypes defined by the virulence factors they express. These include: enteropathogenic E. coli (EPEC), enterohaemorrhagic E. coli(EHEC), enterotoxigenic E. coli (ETEC), enteroaggregative E. coli (EAEC), enteroinvasive E. coli (EIEC) and diffusely adherent E. coli (DAEC). Uropathogenic EC (UPEC) is the most common EC infection that occurs outside the GI tract. The EC pathotypes that infects extraintestinal locations have been designated ExPEC. The EC pathotypes that infect animals and cause disease include EPEC, EHEC and ETEC.[nature.com/nrmicro/journal/v2/n2/full/nrmicro818.html][vetres.org/articles/vetres/pdf/2006/01/v6008.pdf] Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli enteropathogenic eae gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
EPEC eae gene Stl Ql NAA+non-probe
Display Name
E. coli enteropathogenic eae gene NAA+non-probe Ql (Stl)
Consumer Name Alpha
Escherichia coli enteropathogenic eae gene, Stool

Example Answer List LL744-4

Source: Regenstrief Institute

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.63
Change Reason
Changed Method from "Melt.amp.tar" to "Non-probe.amp.tar", which includes other non-probe based detection methods while still distinguishing from probe-based methods.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

zh-CNChinese (China)
大肠埃希菌肠致病型 eae 基因:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
fr-CAFrench (Canada)
Escherichia coli entéropathogéniques eae gène:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Non-sonde.amplification de cible
fr-FRFrench (France)
Escherichia coli entéropathogéniques eae gène:Présence/Seuil:Ponctuel:Selles:Qualitatif:Non-PCR amplification de cible
it-ITItalian (Italy)
Escherichia coli enteropatogeni gene eae:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
es-MXSpanish (Mexico)
Gen eae enteropatógeno de Escherichia coli:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
es-ESSpanish (Spain)
gen eae de Escherichia coli enteropatogenica:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=80348-6