LOINC
Version 2.72

80349-4Escherichia coli enteroaggregative pAA plasmid aggR+aatA genes [Presence] in Stool by NAA with non-probe detectionActive

Term Description

This assay detects the Escherichia coli enteroaggregative pAA plasmid aggR and aatA genes using PCR and melt curve analysis. This term was created for, but is not limited in use to, BioFire's FilmArray Gastrointestinal panel, which is intended for the detection and identification of nucleic acids from multiple bacteria, viruses, and parasites directly from stool samples from individuals with signs and/or symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Description

LP200468-9   Escherichia coli enteroaggregative pAA plasmid aggR+aatA genes
Enteroaggregative Escherichia coli (EAEC) is a bacteria that causes chronic diarrhea in travelers, children in developing countries, HIV-infected patients, and in farm animals, most commonly piglets and calves. A low-molecular weight, heat-stable, plasmid-encoded enterotoxin known as EAEC heat-stable enterotoxin 1 (EAST1) is produced by some strains of EAEC. EAST1 is encoded by the astA gene. In addition to EAEC, the astA gene has been identified in other diarrheagenic Escherichia coli (EC) pathotypes including enterohemorrhagic E. coli (EHEC), enterotoxigenic E. coli (ETEC), diffusely adherent E. coli (DAEC) and enteropathogenic E. coli (EPEC).[PMID:8385356][PMID:12003040] Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli enteroaggregative pAA plasmid aggR+aatA genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Non-probe.amp.tar

Additional Names

Short Name
EAEC pAA plas aggR+aatA St NAA+non-prb
Display Name
E. coli enteroaggregative pAA plasmid aggR+aatA genes NAA+non-probe Ql (Stl)
Consumer Name Alpha
Escherichia coli enteroaggregative pAA plasmid aggR+aatA genes, Stool

Example Answer List LL744-4

Source: Regenstrief Institute

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.63
Change Reason
Changed Method from "Melt.amp.tar" to "Non-probe.amp.tar", which includes other non-probe based detection methods while still distinguishing from probe-based methods.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
82195-9 Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

zh-CNChinese (China)
大肠埃希菌肠集聚型 pAA 质粒 aggR+aatA 基因:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
fr-FRFrench (France)
Escherichia coli entéro-agrégatif pAA plasmide aggR+aatA gènes:Présence/Seuil:Ponctuel:Selles:Qualitatif:Non-PCR amplification de cible
it-ITItalian (Italy)
Escherichia coli enteroaggregativi Paa Plasmidico aggR+ geni aatA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
es-MXSpanish (Mexico)
Escherichia coli pAA enteroagregativo plásmido aggR + genes aatA:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
es-ESSpanish (Spain)
Escherichia coli enteroagregativa plasmido pAA genes aggR+aatA:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=80349-4