LOINC
Version 2.67

85796-1Rubella virus E1 gene [Cycle Threshold #] in Unspecified specimen by NAA with probe detectionActive

Term Description

Quantitative (Ct) result for detection of nucleic acids within the E1 region of Rubella virus RNA in various clinical samples or from cell culture.
Source: Regenstrief LOINC

Part Description

LP248008-7   Rubella virus E1 gene
Rubella virus genome consists of enveloped, non-segmented, positive sense RNA. It encodes three structural and two non-structural proteins. The structural proteins include capsid (C) and two glycoproteins, E2 and E1. The non-structural proteins include P150 and P90. [PMID: 23351667] Genetic characterization of RuV genomes contributes to virus surveillance efforts. Genotyping is based on comparison of a 739 nucleotide sequence in the E1 coding region to reference virus sequences. According to the WHO nomenclature for Rubella virus, genotype names are indicated by a number (1 or 2) that indicates the clade that the genotype belongs to, followed by a letter that represents grouping within the clade. For genotypes that are considered provisional, a lower case letter is used, and when a genotype goes from provisional to accepted status, the letter is changed to upper case. For example, provisional genotypes 1h, 1i and 1j were established in 2007 and upgraded to 1H, 1I and 1J in 2013. [http://www.who.int/wer/2013/wer8832.pdf] Source: Regenstrief LOINC

Fully-Specified Name

Component
Rubella virus E1 gene
Property
ThreshNum
Time
Pt
System
XXX
Scale
Qn
Method
Probe.amp.tar

Additional Names

Short Name
RUBV E1 Ct XXX Qn NAA+probe
Display Name
Rubella virus E1 gene NAA+probe (Unsp spec) [ThreshNum]

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.61
Last Updated
Version 2.63
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
85795-3 Rubella virus E1 gene and genotype panel - Unspecified specimen

Member of these Groups

LG32766-4 Rubella virus

Language Variants Get Info

zh-CNChinese (CHINA)
风疹病毒 E1 基因:阈值循环圈数:时间点:XXX:定量型:探针法.基因扩增.靶向
nl-NLDutch (NETHERLANDS)
Rubellavirus E1-gen:drempelwaarde nummer:moment:XXX:kwantitatief:moleculaire techniek (PCR)
fr-FRFrench (FRANCE)
Rubéole virus E1 gène:Cycle seuil:Ponctuel:Milieux divers:Numérique:PCR amplification de cible
it-ITItalian (ITALY)
Rosolia virus, gene E1:Thresnum:Pt:XXX:Qn:Sonda.amp.tar
es-ESSpanish (SPAIN)
Panel del Gen E1 del virus de la Rubeola:ThreshNnum:Punto temporal:XXX:Qn:Sonda con amplificación dirigida

Example Units

Unit Source
{Ct_value} Example UCUM Units

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=85796-1