LOINC
Version 2.72

94640-0SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory specimen by NAA with probe detectionActive

Term Description

Qualitative detection of nucleic acids within the spike (S) gene of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection.
Source: Regenstrief LOINC

Part Description

LP418046-1   SARS coronavirus 2 S gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC:coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance] Source: Regenstrief LOINC

Fully-Specified Name

Component
SARS coronavirus 2 S gene
Property
PrThr
Time
Pt
System
Respiratory
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
SARS-CoV-2 S gene Resp Ql NAA+probe
Display Name
SARS-CoV-2 (COVID-19) S gene NAA+probe Ql (Resp)
Consumer Name Alpha
SARS-CoV-2 (COVID-19) S gene, Respiratory

Ask At Order Entry

This panel contains a convenience grouping of terms for questions commonly asked when an order is placed in a public health laboratory.

LOINC Name R/O/C Cardinality Example UCUM Units
81959-9 Public health laboratory ask at order entry panel
Indent81744-5 Submitter's laboratory test method [Type] in Specimen
Indent81658-7 Suspected organism [Identifier] in Specimen
Indent86952-9 Preliminary testing done Specimen
Indent86953-7 Preliminary testing result Specimen
Indent86955-2 Preliminary testing affected submission for further testing Specimen
Indent95417-2 Whether this is the patient's first test for condition of interest
Indent95418-0 Whether patient is employed in a healthcare setting
Indent95419-8 Whether the patient has symptoms related to condition of interest
Indent11368-8 Illness or injury onset date and time C
Indent77974-4 Whether the patient was hospitalized for condition of interest
Indent95420-6 Whether the patient was admitted to intensive care unit (ICU) for condition of interest
Indent95421-4 Whether patient resides in a congregate care setting
Indent82810-3 Pregnancy status C
Indent30525-0 Age a

Example Answer List LL2021-5

Source: Gen-Probe

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) LA15841-2

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.68
Last Updated
Version 2.69
Order vs. Observation
Both

Reference Information

Type Source Reference
Webcontent Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. Coronavirus (COVID-19) Testing

Member of these Panels

LOINC Long Common Name
92143-7 Respiratory pathogens DNA and RNA panel - Respiratory specimen by NAA with probe detection
94499-1 Respiratory viral pathogens DNA and RNA panel - Respiratory specimen Qualitative by NAA with probe detection
96094-8 SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory specimen by NAA with probe detection
94531-1 SARS-CoV-2 (COVID-19) RNA panel - Respiratory specimen by NAA with probe detection

Member of these Groups

LG51033-5 SARS coronavirus 2 S gene|PrThr|Sys:ANYResp
LG51017-8 SARSCoV2 detection
LG51019-4 SARSCoV2 molecular detection

Language Variants Get Info

zh-CNChinese (China)
SARS 冠状病毒 2 S 基因:存在情况或阈值:时间点:呼吸道:序数型:探针法.基因扩增.靶向
nl-NLDutch (Netherlands)
SARS-CoV-2 S-gen:aanwezigheid:moment:luchtwegen:ordinaal:moleculaire techniek (PCR)
fr-CAFrench (Canada)
gène S du coronavirus 2 du SRAS:Présence-Seuil:Temps ponctuel:Respiratoire:Ordinal:Sonde avec amplification de la cible
fr-FRFrench (France)
Coronavirus SARS-CoV-2 gène S:Présence/Seuil:Ponctuel:Respiratoire:Qualitatif:PCR amplification de cible
de-DEGerman (Germany)
SARS-Coronavirus 2 S-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Probenmaterial aus dem Respirationstrakt:Ordinal:Zielfragmentamplifikation mit Sondendetektion
it-ITItalian (Italy)
SARS-CoV-2 (COVID-19), gene S:PrThr:Pt:Respiratorio:Ord:Sonda.amp.tar
es-MXSpanish (Mexico)
Gen del coronavirus 2 S del SARS:Presencia o umbral:Punto temporal:Espécimen respiratorio:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
es-ESSpanish (Spain)
Gen S de SARS-CoV-2 (COVID-19):PrThr:Punto temporal:Respiratorio:Ord:Sonda con amplificación dirigida

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=94640-0