Viruses transmitted by arthropod vectors tests, excluding donors

1.0

1_Arbovirus

928

2.63

2018-06-28

2018-07-11

This parent group contains individual groups for Arbovirus terms that have the same Component, Property and time regardless of the System and Method). Note: Clasification according to CDC Arbovirus Group. Please note that: probably not arbovirus (Ebola, Hantavirus puumala, Hantavirus seoul, Hantavirus sin nombre, Marburg); Possible Arbovirus (hantavirus hantaan, Vesicular stomatitis Alagoas, Vesicular stomatitis New Jersey); Not Arbovirus (Lassa); Under review (Hantavirus dobrova, Hantavirus saaremaa).

This group is intended for identifying any patient who has had any form of laboratory testing for viruses transmitted by arthropod vectors, such as for public health surveillance. Note: Clasification according to CDC Arbovirus Catalog. Please note that: probably not arbovirus (Ebola, Hantavirus puumala, Hantavirus seoul, Hantavirus sin nombre, Marburg); Possible Arbovirus (hantavirus hantaan, Vesicular stomatitis Alagoas, Vesicular stomatitis New Jersey); Not Arbovirus (Lassa); Under review (Hantavirus dobrova, Hantavirus saaremaa).European Centre for Disease Prevention and Controlhttp://www.ecdc.europeu/en/healthtopics/Pages/AZIndex.aspxEuropean Network for Imported Viral Diseaseshttp://www.enivd.de/FS/fs_encdiseases.htmWorld Health Organizationhttp://www.who.int/mediacentre/factsheets/es/index.htmCenters for Disease Control and Preventionhttp://www.cdc.gov/std/healthcomm/fact_sheets.htmhttps://wwwn.cdc.gov/Arbocat/VirusBrowser.aspxMicrobiological diagnosis of emerging arboviruses and robovirosisSEIMC (Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica) https://www.seimc.org/contenidos/documentoscientificos/procedimientosmicrobiologia/seimc-procedimientomicrobiologia47.pdf

Clinical Suspiction of viruses transmitted by arthropod vectors.

Bitac (Vicky Berez)
Query written and results reviewed by specialized clinical consultant and the rest of Bitac team.
Select LOINC_NUM, LONG_COMMON_NAME, COMPONENT,PROPERTy, TIME_ASPCT, SYSTEM, SCALE_TYP, METHOD_TYP from LOINC where (component like '%African horse sickness virus%' or component like '%African swine fever virus%' or component like '%Arbovirus%' or component like '%Banzi virus%' or component like '%Barmah forest virus%' or component like '%Barmah forest virus%' or component like '%Bebaru virus%' or component like '%Bluetonguevirus%' or component like '%Cache valley virus%' or component like '%California encephalitis virus%' or component like '%California serogroup virus%' or component like '%Chikungunya virus%' or component like '%Colorado tick fever virus%' or component like '%Crimean-Congo hemorrhagic fever virus%' or component like '%Dengue virus%' or component like '%Eastern equine encephalitis virus%' or component like '%Ebola virus%' or component like '%Epizootic hemorrhagic disease virus%' or component like '%European tick borne encephalitis virus%' or component like '%Flavivirus%' or component like '%Getah virus%' or component like '%Hantavirus%' or component like '%Highlands J virus%' or component like '%Jamestown canyon virus%' or component like '%Japanese encephalitis virus%' or component like '%Junin virus%' or component like '%La Crosse virus%' or component like '%Lassa virus%' or component like '%Marburg virus%' or component like '%Murray Valley encephalitis virus%' or component like '%Nairobi sheep disease virus%' or component like '%Powassan virus%' or component like '%Rift valley fever virus%' or component like '%Ross river virus%' or component like '%Saint Louis encephalitis virus%' or component like '%Semliki forest virus%' or component like '%Sindbis virus%' or component like '%Snowshoe hare virus%' or component like '%Toscana virus%' or component like '%Trivittatus virus%' or component like '%Venezuelan equine encephalitis virus%' or component like '%Vesicular stomatitis Alagoas virus%' or component like '%Vesicular stomatitis Indiana virus%' or component like '%Vesicular stomatitis New Jersey virus%' or component like '% Vesicular stomatitis virus%' or component like '%Viral hemorrhagic disease virus%' or component like '%West Nile virus%' or component like '%Western equine encephalitis virus%' or component like '%Yellow fever virus%' or component like '%Zika virus%') and (SYSTEM not like '%Donor' and system not like '%BPU%' and system not like '%Fet%');
LOINC Long Common Name Component Prop Time System Scale Method
20736-5 Cache valley virus Ab [Presence] in Serum by Neutralization test Cache valley virus Ab PrThr Pt Ser Ord Neut
22161-4 Cache valley virus Ab [Presence] in Serum Cache valley virus Ab PrThr Pt Ser Ord
22766-0 African horse sickness virus Ab [Presence] in Serum by Immunoassay African horse sickness virus Ab PrThr Pt Ser Ord IA
22767-8 African horse sickness virus Ab [Presence] in Serum by Immunoblot African horse sickness virus Ab PrThr Pt Ser Ord IB
22768-6 African horse sickness virus Ab [Presence] in Serum by Complement fixation African horse sickness virus Ab PrThr Pt Ser Ord Comp fix
22769-4 African horse sickness virus Ab [Titer] in Serum by Neutralization test African horse sickness virus Ab Titr Pt Ser Qn Neut
22770-2 African horse sickness virus Ab [Titer] in Serum African horse sickness virus Ab Titr Pt Ser Qn
22771-0 African horse sickness virus Ab [Presence] in Serum African horse sickness virus Ab PrThr Pt Ser Ord
22772-8 African horse sickness virus Ag [Presence] in Tissue by Immunoassay African horse sickness virus Ag PrThr Pt Tiss Ord IA
22773-6 African horse sickness virus Ag [Presence] in Unspecified specimen by Immunoassay African horse sickness virus Ag PrThr Pt XXX Ord IA
22774-4 African horse sickness virus RNA [Presence] in Tissue by NAA with probe detection African horse sickness virus RNA PrThr Pt Tiss Ord Probe.amp.tar
22775-1 African horse sickness virus serotype [Identifier] in Serum by Neutralization test African horse sickness virus serotype Prid Pt Ser Nom Neut
22776-9 African horse sickness virus serotype [Identifier] in Unspecified specimen by Neutralization test African horse sickness virus serotype Prid Pt XXX Nom Neut
22777-7 African swine fever virus Ab [Presence] in Body fluid by Immunoassay African swine fever virus Ab PrThr Pt Body fld Ord IA
22778-5 African swine fever virus Ab [Presence] in Body fluid African swine fever virus Ab PrThr Pt Body fld Ord
22779-3 African swine fever virus Ab [Presence] in Serum African swine fever virus Ab PrThr Pt Ser Ord
22780-1 African swine fever virus Ab [Presence] in Serum by Immunoassay African swine fever virus Ab PrThr Pt Ser Ord IA
22781-9 African swine fever virus Ag [Presence] in Unspecified specimen by Agglutination African swine fever virus Ag PrThr Pt XXX Ord Aggl
22782-7 African swine fever virus Ag [Presence] in Tissue by Agglutination African swine fever virus Ag PrThr Pt Tiss Ord Aggl
22783-5 African swine fever virus Ag [Presence] in Tissue by Immunofluorescence African swine fever virus Ag PrThr Pt Tiss Ord IF
22784-3 African swine fever virus Ag [Presence] in Unspecified specimen by Immunofluorescence African swine fever virus Ag PrThr Pt XXX Ord IF
22785-0 African swine fever virus DNA [Presence] in Tissue by NAA with probe detection African swine fever virus DNA PrThr Pt Tiss Ord Probe.amp.tar
23592-9 African swine fever virus Ab [Presence] in Serum by Immune stain African swine fever virus Ab PrThr Pt Ser Ord Immune stain
24118-2 Barmah forest virus IgM Ab [Presence] in Serum by Immunoassay Barmah forest virus Ab.IgM PrThr Pt Ser Ord IA
24121-6 Barmah forest virus IgG Ab [Presence] in Serum by Immunoassay Barmah forest virus Ab.IgG PrThr Pt Ser Ord IA
26014-1 Arbovirus NOS Ab [Titer] in Serum by Complement fixation Arbovirus NOS Ab Titr Pt Ser Qn Comp fix
26623-9 Chikungunya virus Ab [Presence] in Serum Chikungunya virus Ab PrThr Pt Ser Ord
26652-8 Banzi virus Ab [Presence] in Serum Banzi virus Ab PrThr Pt Ser Ord
26653-6 Colorado tick fever virus Ab [Presence] in Serum Colorado tick fever virus Ab PrThr Pt Ser Ord
26662-7 Bebaru virus Ab [Presence] in Serum Bebaru virus Ab PrThr Pt Ser Ord
31220-7 African horse sickness virus Ab [Units/volume] in Serum African horse sickness virus Ab ACnc Pt Ser Qn
31223-1 Arbovirus NOS Ab [Units/volume] in Serum Arbovirus NOS Ab ACnc Pt Ser Qn
31247-0 Barmah forest virus IgG Ab [Presence] in Serum Barmah forest virus Ab.IgG PrThr Pt Ser Ord
31248-8 Barmah forest virus IgM Ab [Presence] in Serum Barmah forest virus Ab.IgM PrThr Pt Ser Ord
31715-6 African horse sickness virus Ag [Presence] in Unspecified specimen African horse sickness virus Ag PrThr Pt XXX Ord
31716-4 African swine fever virus Ag [Presence] in Unspecified specimen African swine fever virus Ag PrThr Pt XXX Ord
34447-3 Cache valley virus RNA [Presence] in Blood by NAA with probe detection Cache valley virus RNA PrThr Pt Bld Ord Probe.amp.tar
34448-1 Cache valley virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection Cache valley virus RNA PrThr Pt CSF Ord Probe.amp.tar
34462-2 California serogroup RNA [Presence] in Cerebral spinal fluid by NAA with probe detection California serogroup virus RNA PrThr Pt CSF Ord Probe.amp.tar
34463-0 California serogroup RNA [Presence] in Blood by NAA with probe detection California serogroup virus RNA PrThr Pt Bld Ord Probe.amp.tar
34623-9 Colorado tick fever virus Ab [Titer] in Serum Colorado tick fever virus Ab Titr Pt Ser Qn
34885-4 African horse sickness virus Ab [Presence] in Serum by Immunofluorescence African horse sickness virus Ab PrThr Pt Ser Ord IF
35694-9 California encephalitis virus IgG Ab [Titer] in Serum California encephalitis virus Ab.IgG Titr Pt Ser Qn
35695-6 California encephalitis virus IgM Ab [Titer] in Serum California encephalitis virus Ab.IgM Titr Pt Ser Qn
35696-4 California encephalitis virus Ab [Titer] in Cerebral spinal fluid California encephalitis virus Ab Titr Pt CSF Qn
36895-1 Arbovirus Ab [Identifier] in Unspecified specimen by Immunofluorescence Arbovirus Ab Prid Pt XXX Nom IF
36899-3 Arbovirus Ab [Identifier] in Unspecified specimen Arbovirus Ab Prid Pt XXX Nom
37986-7 California serogroup RNA [Presence] in Unspecified specimen by Probe California serogroup virus RNA PrThr Pt XXX Ord Probe
40505-0 Chikungunya virus Ab [Titer] in Serum by Hemagglutination inhibition Chikungunya virus Ab Titr Pt Ser Qn HAI
40584-5 Arbovirus IgM Ab [Presence] in Serum Arbovirus Ab.IgM PrThr Pt Ser Ord
43064-5 Chikungunya virus Ab [Titer] in Serum Chikungunya virus Ab Titr Pt Ser Qn
43092-6 Arbovirus NOS Ab [Titer] in Serum Arbovirus NOS Ab Titr Pt Ser Qn
43132-0 California encephalitis virus Ab [Units/volume] in Serum Qualitative California encephalitis virus Ab ACnc Pt Ser Ord
43905-9 Arbovirus IgG Ab [Presence] in Serum Arbovirus Ab.IgG PrThr Pt Ser Ord
43931-5 California encephalitis virus Ab [Titer] in Serum California encephalitis virus Ab Titr Pt Ser Qn
44074-3 Arbovirus Ab [Interpretation] in Serum by Immunofluorescence Arbovirus Ab Imp Pt Ser Nom IF
44272-3 Cache valley virus Ab [Titer] in Serum by Neutralization test Cache valley virus Ab Titr Pt Ser Qn Neut
46175-6 Cache valley virus Ab [Titer] in Serum Cache valley virus Ab Titr Pt Ser Qn
49093-8 Arbovirus IgG and IgM panel - Serum by Immunofluorescence Arbovirus Ab.IgG & IgM panel - Pt Ser - IF
49094-6 Arbovirus IgG and IgM panel - Cerebral spinal fluid by Immunofluorescence Arbovirus Ab.IgG & IgM panel - Pt CSF - IF
49138-1 California encephalitis virus IgG Ab [Titer] in Cerebral spinal fluid by Immunofluorescence California encephalitis virus Ab.IgG Titr Pt CSF Qn IF
49139-9 California encephalitis virus IgM Ab [Titer] in Cerebral spinal fluid by Immunofluorescence California encephalitis virus Ab.IgM Titr Pt CSF Qn IF
49140-7 California encephalitis virus IgG Ab [Titer] in Serum by Immunofluorescence California encephalitis virus Ab.IgG Titr Pt Ser Qn IF
49141-5 California encephalitis virus IgM Ab [Titer] in Serum by Immunofluorescence California encephalitis virus Ab.IgM Titr Pt Ser Qn IF
49193-6 California encephalitis virus IgM Ab [Titer] in Cerebral spinal fluid California encephalitis virus Ab.IgM Titr Pt CSF Qn
49194-4 California encephalitis virus IgG Ab [Titer] in Cerebral spinal fluid California encephalitis virus Ab.IgG Titr Pt CSF Qn
49195-1 California encephalitis virus IgG Ab [Units/volume] in Serum California encephalitis virus Ab.IgG ACnc Pt Ser Qn
50034-8 Arbovirus Ab [Identifier] in Unspecified specimen by Neutralization test Arbovirus Ab Prid Pt XXX Nom Neut
51664-1 Chikungunya virus RNA [Presence] in Unspecified specimen by NAA with probe detection Chikungunya virus RNA PrThr Pt XXX Ord Probe.amp.tar
53802-5 Arbovirus IgG Ab [Interpretation] in Serum by Immunofluorescence Narrative Arbovirus Ab.IgG Imp Pt Ser Nar IF
53804-1 Arbovirus IgG panel - Serum by Immunofluorescence Arbovirus Ab.IgG panel - Pt Ser - IF
55142-4 Cache valley virus RNA [Presence] in Unspecified specimen by NAA with probe detection Cache valley virus RNA PrThr Pt XXX Ord Probe.amp.tar
55143-2 California serogroup RNA [Presence] in Unspecified specimen by NAA with probe detection California serogroup virus RNA PrThr Pt XXX Ord Probe.amp.tar
56128-2 Chikungunya virus IgG Ab [Titer] in Serum or Plasma by Immunofluorescence Chikungunya virus Ab.IgG Titr Pt Ser/Plas Qn IF
56129-0 Chikungunya virus IgG Ab [Presence] in Serum or Plasma by Immunofluorescence Chikungunya virus Ab.IgG PrThr Pt Ser/Plas Ord IF
56130-8 Chikungunya virus IgM Ab [Titer] in Serum or Plasma by Immunofluorescence Chikungunya virus Ab.IgM Titr Pt Ser/Plas Qn IF
56131-6 Chikungunya virus IgM Ab [Presence] in Serum or Plasma by Immunofluorescence Chikungunya virus Ab.IgM PrThr Pt Ser/Plas Ord IF
57934-2 Chikungunya virus IgM Ab [Presence] in Serum Chikungunya virus Ab.IgM PrThr Pt Ser Ord
60260-7 Chikungunya virus RNA [Presence] in Serum or Plasma by NAA with probe detection Chikungunya virus RNA PrThr Pt Ser/Plas Ord Probe.amp.tar
6309-9 Arbovirus identified in Blood by Organism specific culture Arbovirus identified Prid Pt Bld Nom Organism specific culture
6310-7 Arbovirus identified in Unspecified specimen by Organism specific culture Arbovirus identified Prid Pt XXX Nom Organism specific culture
73693-4 African swine fever virus DNA [Cycle Threshold #] in Tissue by NAA with probe detection African swine fever virus DNA ThreshNum Pt Tiss Qn Probe.amp.tar
74031-6 Arbovirus identified in Serum by Immunofluorescence Arbovirus identified Prid Pt Ser Nom IF
74032-4 Arbovirus IgM panel - Serum Arbovirus Ab.IgM panel - Pt Ser -
74033-2 Arbovirus IgM Ab [Presence] in Serum by Immunofluorescence Arbovirus Ab.IgM PrThr Pt Ser Ord IF
74821-0 Chikungunya virus Ab [Presence] in Serum by Hemagglutination inhibition Chikungunya virus Ab PrThr Pt Ser Ord HAI
81120-8 Barmah forest virus Ab [Titer] in Serum Barmah forest virus Ab Titr Pt Ser Qn
81152-1 Chikungunya virus non-structural protein 1 (nsP1) RNA [Presence] in Serum by NAA with probe detection Chikungunya virus non-structural protein 1 (nsP1) RNA PrThr Pt Ser Ord Probe.amp.tar
81153-9 Chikungunya virus non-structural protein 1 (nsP1) RNA [Presence] in Cerebral spinal fluid by NAA with probe detection Chikungunya virus non-structural protein 1 (nsP1) RNA PrThr Pt CSF Ord Probe.amp.tar
81688-4 Barmah forest virus RNA [Presence] in Blood by NAA with probe detection Barmah forest virus RNA PrThr Pt Bld Ord Probe.amp.tar
82297-3 Chikungunya virus structural proteins (E1+E2) IgG Ab [Presence] in Serum by Immunoassay Chikungunya virus structural proteins (E1+E2) Ab.IgG PrThr Pt Ser Ord IA
83067-9 Chikungunya virus structural proteins (E1+E2) IgM Ab [Units/volume] in Serum or Plasma by Immunoassay Chikungunya virus structural proteins (E1+E2) Ab.IgM ACnc Pt Ser/Plas Qn IA
83068-7 Chikungunya virus structural proteins (E1+E2) IgG Ab [Units/volume] in Serum or Plasma by Immunoassay Chikungunya virus structural proteins (E1+E2) Ab.IgG ACnc Pt Ser/Plas Qn IA
86514-7 Chikungunya virus RNA [Presence] in Amniotic fluid by NAA with probe detection Chikungunya virus RNA PrThr Pt Amnio fld Ord Probe.amp.tar
86515-4 Chikungunya virus RNA [Presence] in Urine by NAA with probe detection Chikungunya virus RNA PrThr Pt Urine Ord Probe.amp.tar
88455-1 California encephalitis virus Ab.IgG and IgM panel - Serum by Immunofluorescence California encephalitis virus Ab.IgG & IgM panel - Pt Ser - IF
88456-9 California encephalitis virus IgG+IgM Ab [Interpretation] in Serum Qualitative by Immunofluorescence California encephalitis virus Ab.IgG+IgM Imp Pt Ser Ord IF
88629-1 Chikungunya virus IgM Ab [Presence] in Serum by Immunoassay Chikungunya virus Ab.IgM PrThr Pt Ser Ord IA
88630-9 Chikungunya virus IgG Ab [Presence] in Serum by Immunoassay Chikungunya virus Ab.IgG PrThr Pt Ser Ord IA

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