Viruses transmitted by arthropod vectors that cause encephalitis tests, excluding donors

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2_encephalitis_ arthropod-borne viral pathogens

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2018-06-28

2018-07-11

This group is intended for identifying any patient who has had any form of laboratory testing for viruses transmitted by arthropod vectors that cause encephalitis. Note: According to European Network for Diagnostics of "Imported" Viral Diseases (ENIVD) Semliki forest virus is under review. Note: Classification according to CDC Arbovirus Catalog. Please note that: probably not arbovirus (Ebola, Hantavirus puumala, Hantavirus seoul, Hantavirus sin nombre, Marburg); Possible Arbovirus (hantavirus hantaan, Vesicular stomatitis Alagoas, Vesicular stomatitis New Jersey); Not Arbovirus (Lassa); Under review (Hantavirus dobrova, Hantavirus saaremaa). European Centre for Disease Prevention and Control http://www.ecdc.europeu/en/healthtopics/Pages/AZIndex.aspx European Network for Imported Viral Diseases http://www.enivd.de/FS/fs_encdiseases.htm World Health Organization http://www.who.int/mediacentre/factsheets/es/index.htm Centers for Disease Control and Prevention http://www.cdc.gov/std/healthcomm/fact_sheets.htm https://wwwn.cdc.gov/Arbocat/VirusBrowser.aspx Microbiological diagnosis of emerging arboviruses and robovirosis SEIMC (Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica) https://www.seimc.org/contenidos/documentoscientificos/procedimientosmicrobiologia/seimc-procedimientomicrobiologia47.pdf

This parent group contains individual groups for arthropod-borne viral pathogens terms that cause encephalitis that have the same Component, Property and Time regardless of the System and Method. Note: According to European Network for Diagnostics of "Imported" Viral Diseases (ENIVD) Semliki forest virus is under review. Note: Classification according to CDC Arbovirus Group. Please note that: probably not arbovirus (Ebola, Hantavirus puumala, Hantavirus seoul, Hantavirus sin nombre, Marburg); Possible Arbovirus (hantavirus hantaan, Vesicular stomatitis Alagoas, Vesicular stomatitis New Jersey); Not Arbovirus (Lassa); Under review (Hantavirus dobrova, Hantavirus saaremaa).

Clinical Suspiction of encephalitis transmitted by arthropod vectors.

Bitac (Vicky Berez)
Query written and results reviewed by specialized clinical consultant and the rest of Bitac team.
Select LOINC_NUM, LONG_COMMON_NAME, COMPONENT,PROPERTy, TIME_ASPCT, SYSTEM, SCALE_TYP, METHOD_TYP from LOINC where (component like '%California encephalitis virus%' or component like '%California serogroup virus%' or component like '%Eastern equine encephalitis virus%' or component like '%European tick borne encephalitis virus%' or component like '%Jamestown canyon virus%' or component like '%Japanese encephalitis virus%' or component like '%La Crosse virus%' or component like '%Murray Valley encephalitis virus%' or component like '%Powassan virus%' or component like '%Rift valley fever virus%' or component like '%Saint Louis encephalitis virus%' or component like '%Semliki forest virus%' or component like '%Snowshoe hare virus%' or component like '%Venezuelan equine encephalitis virus%' or component like '%West Nile virus%' or component like '%Western equine encephalitis virus%') and (SYSTEM not like '%Donor' and system not like '%BPU%' and system not like '%Fet%');
LOINC Long Common Name Component Prop Time System Scale Method
10896-9 Eastern equine encephalitis virus IgG Ab [Titer] in Serum by Immunofluorescence Eastern equine encephalitis virus Ab.IgG Titr Pt Ser Qn IF
10897-7 Eastern equine encephalitis virus IgG Ab [Titer] in Cerebral spinal fluid by Immunofluorescence Eastern equine encephalitis virus Ab.IgG Titr Pt CSF Qn IF
10898-5 Eastern equine encephalitis virus IgM Ab [Titer] in Serum by Immunofluorescence Eastern equine encephalitis virus Ab.IgM Titr Pt Ser Qn IF
10899-3 Eastern equine encephalitis virus IgM Ab [Titer] in Cerebral spinal fluid by Immunofluorescence Eastern equine encephalitis virus Ab.IgM Titr Pt CSF Qn IF
13228-2 Eastern equine encephalitis virus IgG Ab [Units/volume] in Cerebral spinal fluid Eastern equine encephalitis virus Ab.IgG ACnc Pt CSF Qn
13229-0 Eastern equine encephalitis virus IgM Ab [Units/volume] in Cerebral spinal fluid Eastern equine encephalitis virus Ab.IgM ACnc Pt CSF Qn
13918-8 Eastern equine encephalitis virus Ab [Titer] in Serum by Immunofluorescence Eastern equine encephalitis virus Ab Titr Pt Ser Qn IF
20790-2 Eastern equine encephalitis virus Ab [Presence] in Serum by Hemagglutination inhibition Eastern equine encephalitis virus Ab PrThr Pt Ser Ord HAI
20791-0 Eastern equine encephalitis virus Ab [Presence] in Serum by Immunofluorescence Eastern equine encephalitis virus Ab PrThr Pt Ser Ord IF
20792-8 Eastern equine encephalitis virus Ab [Presence] in Cerebral spinal fluid by Immunofluorescence Eastern equine encephalitis virus Ab PrThr Pt CSF Ord IF
20793-6 Eastern equine encephalitis virus Ab [Presence] in Serum by Complement fixation Eastern equine encephalitis virus Ab PrThr Pt Ser Ord Comp fix
20794-4 Eastern equine encephalitis virus Ab [Presence] in Cerebral spinal fluid by Complement fixation Eastern equine encephalitis virus Ab PrThr Pt CSF Ord Comp fix
20795-1 Eastern equine encephalitis virus Ab [Titer] in Serum by Neutralization test Eastern equine encephalitis virus Ab Titr Pt Ser Qn Neut
22255-4 Eastern equine encephalitis virus Ab [Presence] in Cerebral spinal fluid Eastern equine encephalitis virus Ab PrThr Pt CSF Ord
22256-2 Eastern equine encephalitis virus Ab [Presence] in Serum Eastern equine encephalitis virus Ab PrThr Pt Ser Ord
22257-0 Eastern equine encephalitis virus Ab [Titer] in Serum Eastern equine encephalitis virus Ab Titr Pt Ser Qn
22258-8 Eastern equine encephalitis virus IgG Ab [Titer] in Cerebral spinal fluid Eastern equine encephalitis virus Ab.IgG Titr Pt CSF Qn
22259-6 Eastern equine encephalitis virus IgG Ab [Titer] in Serum Eastern equine encephalitis virus Ab.IgG Titr Pt Ser Qn
22260-4 Eastern equine encephalitis virus IgM Ab [Titer] in Cerebral spinal fluid Eastern equine encephalitis virus Ab.IgM Titr Pt CSF Qn
22261-2 Eastern equine encephalitis virus IgM Ab [Titer] in Serum Eastern equine encephalitis virus Ab.IgM Titr Pt Ser Qn
22262-0 Deprecated Eastern equine encephalitis virus Ab [Titer] in Serum Eastern equine encephalitis virus Ab Titr Pt Ser Qn
23042-5 Eastern equine encephalitis virus Ab [Titer] in Serum by Hemagglutination inhibition Eastern equine encephalitis virus Ab Titr Pt Ser Qn HAI
23043-3 Eastern equine encephalitis virus Ab [Presence] in Serum by Agglutination Eastern equine encephalitis virus Ab PrThr Pt Ser Ord Aggl
23044-1 Eastern equine encephalitis virus Ab [Presence] in Serum by Neutralization test Eastern equine encephalitis virus Ab PrThr Pt Ser Ord Neut
23045-8 Eastern equine encephalitis virus IgM Ab [Presence] in Serum by Immunoassay Eastern equine encephalitis virus Ab.IgM PrThr Pt Ser Ord IA
23046-6 Eastern equine encephalitis virus IgM Ab [Presence] in Serum Eastern equine encephalitis virus Ab.IgM PrThr Pt Ser Ord
23047-4 Eastern equine encephalitis virus Ag [Presence] in Brain by Complement fixation Eastern equine encephalitis virus Ag PrThr Pt Brain Ord Comp fix
23048-2 Eastern equine encephalitis virus Ag [Presence] in Unspecified specimen by Immunofluorescence Eastern equine encephalitis virus Ag PrThr Pt XXX Ord IF
23049-0 Eastern equine encephalitis virus Ag [Presence] in Unspecified specimen by Complement fixation Eastern equine encephalitis virus Ag PrThr Pt XXX Ord Comp fix
23050-8 Eastern equine encephalitis virus Ag [Presence] in Unspecified specimen by Neutralization test Eastern equine encephalitis virus Ag PrThr Pt XXX Ord Neut
23051-6 Eastern equine encephalitis virus RNA [Presence] in Tissue by NAA with probe detection Eastern equine encephalitis virus RNA PrThr Pt Tiss Ord Probe.amp.tar
23052-4 Eastern equine encephalitis virus RNA [Presence] in Tissue by Probe Eastern equine encephalitis virus RNA PrThr Pt Tiss Ord Probe
24006-9 Eastern equine encephalitis virus IgG and IgM [Interpretation] in Serum Eastern equine encephalitis virus Ab.IgG & IgM Imp Pt Ser Nom
24213-1 Eastern equine encephalitis virus Ab [Titer] in Serum by Immunofluorescence --1st specimen Eastern equine encephalitis virus Ab^1st specimen Titr Pt Ser Qn IF
24214-9 Eastern equine encephalitis virus Ab [Titer] in Serum by Immunofluorescence --2nd specimen Eastern equine encephalitis virus Ab^2nd specimen Titr Pt Ser Qn IF
24287-5 Eastern equine encephalitis virus Ab [Titer] in Serum --1st specimen Eastern equine encephalitis virus Ab^1st specimen Titr Pt Ser Qn
24288-3 Eastern equine encephalitis virus Ab [Titer] in Serum --2nd specimen Eastern equine encephalitis virus Ab^2nd specimen Titr Pt Ser Qn
26058-8 European tick borne encephalitis virus Ab [Titer] in Serum by Complement fixation European tick borne encephalitis virus Ab Titr Pt Ser Qn Comp fix
26059-6 European tick borne encephalitis virus IgG Ab [Units/volume] in Serum by Immunoassay European tick borne encephalitis virus Ab.IgG ACnc Pt Ser Qn IA
26060-4 European tick borne encephalitis virus IgM Ab [Units/volume] in Serum by Immunoassay European tick borne encephalitis virus Ab.IgM ACnc Pt Ser Qn IA
26061-2 European tick borne encephalitis virus Ab [Titer] in Serum European tick borne encephalitis virus Ab Titr Pt Ser Qn
26062-0 European tick borne encephalitis virus IgG Ab [Units/volume] in Serum European tick borne encephalitis virus Ab.IgG ACnc Pt Ser Qn
26825-0 Eastern equine encephalitis virus RNA [Presence] in Cerebral spinal fluid by Probe Eastern equine encephalitis virus RNA PrThr Pt CSF Ord Probe
29785-3 Eastern equine encephalitis virus IgG Ab [Presence] in Unspecified specimen by Immunofluorescence Eastern equine encephalitis virus Ab.IgG PrThr Pt XXX Ord IF
29798-6 Eastern equine encephalitis virus IgG Ab [Presence] in Cerebral spinal fluid by Immunofluorescence Eastern equine encephalitis virus Ab.IgG PrThr Pt CSF Ord IF
29811-7 Eastern equine encephalitis virus IgG Ab [Presence] in Serum by Immunofluorescence Eastern equine encephalitis virus Ab.IgG PrThr Pt Ser Ord IF
29824-0 Eastern equine encephalitis virus IgG Ab [Presence] in Unspecified specimen Eastern equine encephalitis virus Ab.IgG PrThr Pt XXX Ord
29836-4 Eastern equine encephalitis virus IgG Ab [Presence] in Cerebral spinal fluid Eastern equine encephalitis virus Ab.IgG PrThr Pt CSF Ord
29848-9 Eastern equine encephalitis virus IgG Ab [Presence] in Serum Eastern equine encephalitis virus Ab.IgG PrThr Pt Ser Ord
31383-3 European tick borne encephalitis virus Ab [Units/volume] in Serum European tick borne encephalitis virus Ab ACnc Pt Ser Qn
31806-3 Eastern equine encephalitis virus Ag [Presence] in Brain Eastern equine encephalitis virus Ag PrThr Pt Brain Ord
31807-1 Eastern equine encephalitis virus Ag [Presence] in Serum Eastern equine encephalitis virus Ag PrThr Pt Ser Ord
31808-9 Eastern equine encephalitis virus Ag [Presence] in Unspecified specimen Eastern equine encephalitis virus Ag PrThr Pt XXX Ord
34449-9 Eastern equine encephalitis virus RNA [Presence] in Blood by NAA with probe detection Eastern equine encephalitis virus RNA PrThr Pt Bld Ord Probe.amp.tar
34450-7 Eastern equine encephalitis virus RNA [Presence] in Cerebral spinal fluid by NAA with probe detection Eastern equine encephalitis virus RNA PrThr Pt CSF Ord Probe.amp.tar
34462-2 California serogroup RNA [Presence] in Cerebral spinal fluid by NAA with probe detection California serogroup virus RNA PrThr Pt CSF Ord Probe.amp.tar
34463-0 California serogroup RNA [Presence] in Blood by NAA with probe detection California serogroup virus RNA PrThr Pt Bld Ord Probe.amp.tar
34723-7 Eastern equine encephalitis virus Ab [Titer] in Cerebral spinal fluid Eastern equine encephalitis virus Ab Titr Pt CSF Qn
35694-9 California encephalitis virus IgG Ab [Titer] in Serum California encephalitis virus Ab.IgG Titr Pt Ser Qn
35695-6 California encephalitis virus IgM Ab [Titer] in Serum California encephalitis virus Ab.IgM Titr Pt Ser Qn
35696-4 California encephalitis virus Ab [Titer] in Cerebral spinal fluid California encephalitis virus Ab Titr Pt CSF Qn
35743-4 Eastern equine encephalitis virus IgG and IgM panel - Unspecified specimen Eastern equine encephalitis virus Ab.IgG & IgM panel - Pt XXX Qn
37983-4 Eastern equine encephalitis virus RNA [Presence] in Unspecified specimen by Probe Eastern equine encephalitis virus RNA PrThr Pt XXX Ord Probe
37986-7 California serogroup RNA [Presence] in Unspecified specimen by Probe California serogroup virus RNA PrThr Pt XXX Ord Probe
38763-9 Eastern equine encephalitis virus IgM Ab [Units/volume] in Unspecified specimen Eastern equine encephalitis virus Ab.IgM ACnc Pt XXX Qn
38764-7 Eastern equine encephalitis virus IgG Ab [Units/volume] in Unspecified specimen Eastern equine encephalitis virus Ab.IgG ACnc Pt XXX Qn
42004-2 Eastern equine encephalitis virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay Eastern equine encephalitis virus Ab.IgM PrThr Pt CSF Ord IA
43044-7 Eastern equine encephalitis virus IgM Ab [Presence] in Cerebral spinal fluid Eastern equine encephalitis virus Ab.IgM PrThr Pt CSF Ord
43096-7 Eastern equine encephalitis virus IgM Ab [Presence] in Unspecified specimen Eastern equine encephalitis virus Ab.IgM PrThr Pt XXX Ord
43132-0 California encephalitis virus Ab [Units/volume] in Serum Qualitative California encephalitis virus Ab ACnc Pt Ser Ord
43329-2 Eastern equine encephalitis virus Ab [Titer] in Serum by Complement fixation Eastern equine encephalitis virus Ab Titr Pt Ser Qn Comp fix
43330-0 Eastern equine encephalitis virus IgM Ab [Titer] in Serum by Immunoassay Eastern equine encephalitis virus Ab.IgM Titr Pt Ser Qn IA
43931-5 California encephalitis virus Ab [Titer] in Serum California encephalitis virus Ab Titr Pt Ser Qn
49065-6 Eastern equine encephalitis virus IgG and IgM [Interpretation] in Cerebral spinal fluid Eastern equine encephalitis virus Ab.IgG & IgM Imp Pt CSF Nom
49138-1 California encephalitis virus IgG Ab [Titer] in Cerebral spinal fluid by Immunofluorescence California encephalitis virus Ab.IgG Titr Pt CSF Qn IF
49139-9 California encephalitis virus IgM Ab [Titer] in Cerebral spinal fluid by Immunofluorescence California encephalitis virus Ab.IgM Titr Pt CSF Qn IF
49140-7 California encephalitis virus IgG Ab [Titer] in Serum by Immunofluorescence California encephalitis virus Ab.IgG Titr Pt Ser Qn IF
49141-5 California encephalitis virus IgM Ab [Titer] in Serum by Immunofluorescence California encephalitis virus Ab.IgM Titr Pt Ser Qn IF
49193-6 California encephalitis virus IgM Ab [Titer] in Cerebral spinal fluid California encephalitis virus Ab.IgM Titr Pt CSF Qn
49194-4 California encephalitis virus IgG Ab [Titer] in Cerebral spinal fluid California encephalitis virus Ab.IgG Titr Pt CSF Qn
49195-1 California encephalitis virus IgG Ab [Units/volume] in Serum California encephalitis virus Ab.IgG ACnc Pt Ser Qn
50547-9 Eastern equine encephalitis virus RNA [Presence] in Unspecified specimen by NAA with probe detection Eastern equine encephalitis virus RNA PrThr Pt XXX Ord Probe.amp.tar
5134-2 Eastern equine encephalitis virus Ab [Units/volume] in Serum Eastern equine encephalitis virus Ab ACnc Pt Ser Qn
52822-4 Eastern equine encephalitis virus IgG Ab [Presence] in Serum by Immunoassay Eastern equine encephalitis virus Ab.IgG PrThr Pt Ser Ord IA
55143-2 California serogroup RNA [Presence] in Unspecified specimen by NAA with probe detection California serogroup virus RNA PrThr Pt XXX Ord Probe.amp.tar
62429-6 Eastern equine encephalitis virus IgM Ab [Presence] in Body fluid by Immunofluorescence Eastern equine encephalitis virus Ab.IgM PrThr Pt Body fld Ord IF
62430-4 Eastern equine encephalitis virus IgM Ab [Presence] in Body fluid by Immunoassay Eastern equine encephalitis virus Ab.IgM PrThr Pt Body fld Ord IA
62431-2 Eastern equine encephalitis virus IgG Ab [Presence] in Body fluid by Immunoassay Eastern equine encephalitis virus Ab.IgG PrThr Pt Body fld Ord IA
6388-3 Eastern equine encephalitis virus Ag [Presence] in Serum by Immunoassay Eastern equine encephalitis virus Ag PrThr Pt Ser Ord IA
6389-1 Eastern equine encephalitis virus Ag [Presence] in Serum by Immunofluorescence Eastern equine encephalitis virus Ag PrThr Pt Ser Ord IF
69034-7 Eastern equine encephalitis virus IgG and IgM panel - Serum by Immunofluorescence Eastern equine encephalitis virus Ab.IgG & IgM panel - Pt Ser - IF
69035-4 Eastern equine encephalitis virus IgG and IgM panel - Cerebral spinal fluid by Immunofluorescence Eastern equine encephalitis virus Ab.IgG & IgM panel - Pt CSF - IF
69926-4 European tick borne encephalitis virus IgG Ab [Presence] in Serum by Immunoassay European tick borne encephalitis virus Ab.IgG PrThr Pt Ser Ord IA
69927-2 European tick borne encephalitis virus IgG Ab [Presence] in Cerebral spinal fluid by Immunoassay European tick borne encephalitis virus Ab.IgG PrThr Pt CSF Ord IA
69928-0 European tick borne encephalitis virus IgG Ab index [Units/volume] in Serum and CSF by Immunoassay European tick borne encephalitis virus Ab.IgG index ACnc Pt Ser+CSF Qn IA
7860-0 Eastern equine encephalitis virus IgG Ab [Units/volume] in Serum Eastern equine encephalitis virus Ab.IgG ACnc Pt Ser Qn
7861-8 Eastern equine encephalitis virus IgM Ab [Units/volume] in Serum Eastern equine encephalitis virus Ab.IgM ACnc Pt Ser Qn
88455-1 California encephalitis virus Ab.IgG and IgM panel - Serum by Immunofluorescence California encephalitis virus Ab.IgG & IgM panel - Pt Ser - IF
88456-9 California encephalitis virus IgG+IgM Ab [Interpretation] in Serum Qualitative by Immunofluorescence California encephalitis virus Ab.IgG+IgM Imp Pt Ser Ord IF

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