LOINC
Version 2.71

96751-3SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics methodActive

Term Description

This term is used to report the mutation(s) identified within the S (spike) gene of SARS coronavirus 2 (SARS-CoV-2) by molecular methods. For reporting the SARS-CoV-2 variant strain identified, various codes are available in LOINC depending on the nomenclature used. For the most general code (nomenclature unspecified), use SARS-CoV-2 (COVID-19) variant [Type] in Specimen [LOINC:96741-4]. To report the lineage for the variant, use SARS-CoV-2 (COVID-19) lineage [Type] in Specimen [LOINC:96895-8]. To report the clade for the variant, use SARS-CoV-2 (COVID-19) clade [Type] in Specimen [LOINC:96896-6].
Source: Regenstrief LOINC

Fully-Specified Name

Component
SARS coronavirus 2 S gene mutation detected
Property
Prid
Time
Pt
System
XXX
Scale
Nom
Method
Molgen

Additional Names

Short Name
SARS-CoV-2 S gene mut Spec
Display Name
SARS-CoV-2 (COVID-19) S gene mutation detected Molgen Nom (Specimen)
Consumer Name Alpha
SARS-CoV-2 (COVID-19) S gene mutation detected, Specimen

Example Answer List LL5775-3

Source: LOINC

Answer Code Score Answer ID
D614G LA31603-6
N501Y LA31604-4
K417N LA31605-1
E484K LA31606-9

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
96894-1 SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Member of these Groups

LG51017-8 SARSCoV2 detection

Language Variants Get Info

nl-NLDutch (Netherlands)
SARS-CoV-2 E-gen gedecteerde mutatie:identificator:moment:XXX:nominaal:moleculair genetisch onderzoek
it-ITItalian (Italy)
SARS coronavirus 2, mutazione identificata del gene S:Prid:Pt:XXX:Nom:Molgen

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96751-3