Version 2.77

92695-6 Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection

Term Description

This panel contains terms to report qualitative results for a variety of bacterial gastrointestinal pathogens.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Gastrointestinal bacterial pathogens panel
Property
-
Time
Pt
System
Stool
Scale
-
Method
Probe.amp.tar

Additional Names

Short Name
GI bact pathogens Pnl Stl NAA+probe
Display Name
Gastrointestinal bacterial pathogens panel NAA+probe (Stl)
Consumer Name Alpha Get Info
Gastrointestinal bacterial pathogens panel, Stool

Basic Attributes

Class
PANEL.MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.70
Change Reason
Release 2.70: DefinitionDescription: Removed vendor-specific information from term description.;
Order vs. Observation
Order
Panel Type
Panel

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Panel de patógenos bacterianos gastrointestinales:Propiedades mixtas (sólo paneles):Punto temporal:Heces:-:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Panel de patógenos bacterianos gastrointestinales:-:Punto temporal:Heces:-:Amplificación de ácidos nucleicos con detección de sonda
fr-CA French (Canada) Panel pathogènes gastro-intestinale bactérienne:-:Temps ponctuel:Selles:-:Sonde avec amplification de la cible
fr-FR French (France) Bactéries pathogènes gastrointestinales panel:-:Ponctuel:Selle:-:PCR amplification de cible
it-IT Italian (Italy) Patogeni gastrointestinali, panel batteri:-:Pt:Feci:-:Sonda.amp.tar
Synonyms: Microbiologia Panel batteri per patogeni gastrointestinali Punto nel tempo (episodio) Set di prescrizione microbiologia Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) gastro-intestinaal bacterieel pathogeen panel:-:moment:feces:-:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 胃肠道细菌性病原体类组套:-:时间点:大便:-:探针法.基因扩增.靶向
Synonyms: 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 医嘱套餐 医嘱套餐类 医嘱套餐组 医嘱组 医嘱组.微生物学;实验室组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目）类.微生物学试验;医嘱组.微生物学试验;医嘱组类.微生物学;医嘱组类.微生物学试验;实验室医嘱组类.微生物学;微生物学医嘱组;微生物学医嘱组类 医嘱组合 医嘱组合类 医嘱组套 医嘱组套类 医嘱组类 多重;多重型;多重标尺类型;多重精度类型 套餐 套餐医嘱 套餐医嘱组 套餐医嘱组类 实验室医嘱套餐 实验室医嘱套餐类 实验室医嘱组 实验室医嘱组合类 实验室医嘱组套 实验室医嘱组套类 实验室套餐医嘱组 实验室套餐医嘱组类 实验室检验项目医嘱组合类 实验室检验项目组合类 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 检验医嘱组合类 检验项目医嘱组合类 检验项目组合类 组 组合 组合医嘱 组合类 组套 细菌性 细菌的 经过扩增的 胃肠道 胃肠道（消化道）细菌性（细菌、细菌类）病原体类（病原体、致病菌、病原物、病原菌、病原生物）组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目） 脱氧核糖核酸探针

80684-4 Campylobacter coli+jejuni+lari 16S rRNA [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in Campylobacter coli, C. jejuni, and C. lari 16S ribosomal RNA in stool specimens by PCR-based methods. This assay does not differentiate between the three species. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP207320-5   Campylobacter coli+jejuni+lari 16S
Campylobacter (meaning 'twisted bacteria') is a genus of bacteria that are Gram-negative, spiral, and microaerophilic. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive. Campylobacter jejuni is now recognized as one of the main causes of bacterial foodborne disease in many developed countries. At least a dozen species of Campylobacter have been implicated in human disease, with C. jejuni and C. coli the most common. C. fetus causes spontaneous abortions in cattle and sheep, and is an opportunistic pathogen in humans. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component
Campylobacter coli+jejuni+lari 16S rRNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
C coli+jej+lar 16S rRNA Stl Ql NAA+probe
Display Name
C. coli+jejuni+lari 16S rRNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Campylobacter coli+jejuni+lari 16S, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.63
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Campylobacter coli+jejuni+lari 16S rRNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Campylobacter coli+jejuni+lari 16S rRNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Campylobacter coli + jejuni + lari 16S rARN:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Campylobacter coli+Campylobacter jejuni+Campylobacter lari ARNr 16S:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Campylobacter coli+jejuni+lari 16S rRNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Campylobacter coli + jejuni + lari 16S rRNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar ribosomaal RNA
zh-CN Chinese (China) 结肠弯曲菌+空肠弯曲菌+海鸥弯曲菌 16S rRNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: Gen-Probe rRNA 探针法.扩增.靶向 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 基因探针 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 核糖体 RNA 探针法.基因扩增.靶向 核糖体 RNA 探针法.扩增.靶向 核糖体核糖核酸 探针法.基因扩增.靶向 核糖体核糖核酸 探针法.扩增.靶向 核糖体核糖核酸;核糖核酸 RNA 核蛋白体 RNA 核蛋白体 RNA 探针法.基因扩增.靶向 核蛋白体 RNA 探针法.扩增.靶向 核蛋白体 RNA（Ribosomal RNA，RRNA） 核蛋白体核糖核酸 核醣体 RNA 经过扩增的 结肠弯曲杆菌;大肠弯曲菌 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌） 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌）+海鸥弯曲菌（红嘴鸥弯曲菌、海鸥弯曲杆菌、红嘴鸥弯曲杆菌） 16S 脱氧核糖核酸探针

79382-8 Campylobacter coli+jejuni+lari fusA gene [Presence] in Stool by NAA with probe detection

Term Description

This test targets the fusA gene that is common to three species in the Campylobacter group -- coli, jejuni and lari -- and does not distinguish between the three species. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP200477-0   Campylobacter coli+jejuni+lari fusA gene
Campylobacter (meaning 'twisted bacteria') is a genus of bacteria that are Gram-negative, spiral, and microaerophilic. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive. Campylobacter jejuni is now recognized as one of the main causes of bacterial foodborne disease in many developed countries. At least a dozen species of Campylobacter have been implicated in human disease, with C. jejuni and C. coli the most common. C. fetus causes spontaneous abortions in cattle and sheep, and is an opportunistic pathogen in humans. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component
Campylobacter coli+jejuni+lari fusA gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
C coli+jejuni+lari fusA Stl Ql NAA+probe
Display Name
C. coli+jejuni+lari fusA gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Campylobacter coli+jejuni+lari fusA gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
3797

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Campylobacter coli+jejuni+lari fusA-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) gen fusA de Campylobacter coli+jejuni+lari:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Campylobacter coli + jejuni + lari gen fusA:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Campylobacter coli+jejuni+lari fusA gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Campylobacter coli+jejuni+lari fusA gene:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Campylobacter coli + jejuni + lari fusA-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: campylobacter coli+jejuni+lari fusA gen ontlasting; feces probe.amp.tar
tr-TR Turkish (Turkey) Campylobacter coli+jejuni+lari fusA geni:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 结肠弯曲菌+空肠弯曲菌+海鸥弯曲菌 fusA 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 结肠弯曲杆菌;大肠弯曲菌 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌） 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌）+海鸥弯曲菌（红嘴鸥弯曲菌、海鸥弯曲杆菌、红嘴鸥弯曲杆菌） fusA 基因 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

81656-1 Campylobacter coli+jejuni tuf gene [Presence] in Stool by NAA with probe detection

Term Description

This test targets the tuf gene that is common to two species in the Campylobacter group, coli and jejuni, and does not distinguish between them. The tuf gene encodes elongation factor Tu. This term was created for, but is not limited in use to, the submitter's BD MAX Enteric Bacterial test kit, which is a diagnostic test for the direct qualitative detection of enteric bacterial pathogens.
Source: Regenstrief LOINC

Part Descriptions

LP208638-9   Campylobacter coli+jejuni tuf gene
Campylobacter bacteria are a major cause of foodborne diarrheal illness in humans and are the most common bacteria that cause gastroenteritis worldwide. In developed and developing countries, they cause more cases of diarrhea than foodborne Salmonella. Campylobacter are mainly spiral-shaped, S-shaped or curved, rod-shaped bacteria. Currently, there are 17 species and 6 subspecies assigned to the genus Campylobacter, of which the most frequently reported in human diseases are C. jejuni (subspecies jejuni) and C. coli. Copyright Copyright © 2001 World Health Organization. Source: World Health Organization (WHO), WHO: Campylobacter

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component
Campylobacter coli+jejuni tuf gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
C coli+jejuni tuf Stl Ql NAA+probe
Display Name
C. coli+jejuni tuf gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Campylobacter coli+jejuni tuf gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.63
Order vs. Observation
Observation

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Campylobacter coli+jejuni tuf-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
de-AT German (Austria) Synonyms: C. j/c. ql. /ST PCR
es-ES Spanish (Spain) Gen tuf de Campylobacter coli+jejuni:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Campylobacter coli + gen de tuf jejuni:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Campylobacter coli+Campylobacter jejuni tuf gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Campylobacter coli+jejuni gene tuf:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Campylobacter coli + jejuni tuf gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 结肠弯曲菌+空肠弯曲菌 tuf 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 结肠弯曲杆菌;大肠弯曲菌 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌） 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌） tuf 基因 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

97312-3 Campylobacter coli+jejuni+upsaliensis DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP212408-1   Campylobacter coli+jejuni+upsaliensis
Campylobacter (meaning 'twisted bacteria') is a genus of bacteria that are Gram-negative, spiral, and microaerophilic. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive. Campylobacter jejuni is now recognized as one of the main causes of bacterial foodborne disease in many developed countries. At least a dozen species of Campylobacter have been implicated in human disease, with C. jejuni and C. coli the most common. C. fetus causes spontaneous abortions in cattle and sheep, and is an opportunistic pathogen in humans. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component
Campylobacter coli+jejuni+upsaliensis DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
C coli+jej+upsa DNA Stl Ql NAA+probe
Display Name
C. coli+jejuni+upsaliensis DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Campylobacter coli+jejuni+upsaliensis, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Campylobacter coli+jejuni+upsaliensis DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Campylobacter coli+jejuni+upsaliensis ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Campylobacter coli + jejuni + ADN de upsaliensis:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-FR French (France) Campylobacter coli+Campylobacter jejuni+Campylobacter upsaliensis ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Campylobacter coli+jejuni+upsaliensis DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Campylobacter coli + jejuni + upsaliensis DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 结肠弯曲菌+空肠弯曲菌+乌普萨拉弯曲菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 结肠弯曲杆菌;大肠弯曲菌 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌） 结肠弯曲菌（结肠弯曲杆菌、大肠弯曲菌）+空肠弯曲菌（空肠弯曲杆菌）+乌普萨拉弯曲菌（乌普萨拉弯曲杆菌） 脱氧核糖核酸探针

80685-1 Clostridioides difficile toxin A+B tcdA+tcdB genes [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Clostridium difficile toxin A (tcdA) and B (tcdB) genes in stool specimens by real-time PCR methods. This assay does not differentiate between C. difficile toxin A and B genes. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP204848-8   Clostridioides difficile toxin A+B tcdA+tcdB genes
Clostridium difficile toxin's A and B are encoded by the tcdA and tcdB genes, respectively. PMID: 20664812 They share similar molecular characteristics with comparable sizes (308 kD for tcdA and 269 for tcdB) and 63% homology in their amino acid sequences. PMID: 9312171 TcdA and tcdB are expressed in response to environmental stresses, such as antibiotics.[ PMID 15831824] Nucleic acid sequences within these genes are targeted to confirm the presence of C. difficile toxins and diagnose the cause of diarrhea, abdominal pain, fever, nausea and other toxin-producing symptoms. Source: Regenstrief LOINC

Fully-Specified Name

Component
Clostridioides difficile toxin A+B tcdA+tcdB genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
C dif tox tcdA+tcdB Stl Ql NAA+probe
Display Name
C. difficile toxin A+B tcdA+tcdB genes NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Clostridioides difficile toxin A+B tcdA+tcdB genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Change Reason
Removed parentheses around the gene names in the Component based on the current LOINC model; Updated genus name from Clostridium to Clostridioides based on current (2019) accepted nomenclature for this genus [PMID:27370902].
Order vs. Observation
Both
Common Test Rank Get Info
10075

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
95183-0 Clostridioides difficile toxin and BI-NAP1-027 strain DNA panel - Stool by NAA with probe detection
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Clostridioides difficile Toxine A+B tcdA+tcdB-Gene:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
de-AT German (Austria) Synonyms: Clostridium difficile bin. Toxin-Gene /ST ql. PCR
es-ES Spanish (Spain) Gen de la toxina del Clostridium difficile A+B (tcdA+tcdB):PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Toxina de Clostridioides difficile A + B genes tcdA + tcdB:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Clostridioides difficile toxines A+B tcdA+tcdB gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Clostridium Difficile (tcdA+tcdB), geni tossine A+B:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Geni delle tossine A+B del Clostridium Difficile ( Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Tossina A di Clostridium difficile Tossina A+B di Clostridium difficile Tossina di Clostridium difficile
nl-NL Dutch (Netherlands) Clostridioides difficile toxine A+B (tcdA+tcdB) genen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: Clostridium difficile Clostridium difficile toxine Clostridium difficile toxine A Clostridium difficile toxine A+B Clostridium difficile toxine A+B (tcdA+tcdB) genen ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 艰难梭菌毒素 A+B tcdA+tcdB 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: A 型 A,B 型;AB 型 B 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 分子病理学 - 基因类 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 艰难梭状芽胞杆菌;艰难芽孢梭菌 艰难梭状芽胞杆菌毒素 A;艰难梭状芽胞杆菌毒素 A 型;艰难梭菌毒素 A 型;艰难芽孢梭菌毒素 A;艰难芽孢梭菌毒素 A 型 艰难梭状芽胞杆菌毒素 A+B;艰难梭状芽胞杆菌毒素 A+B 型;艰难梭菌毒素 A+B 型;艰难芽孢梭菌毒素 A+B;艰难芽孢梭菌毒素 A+B 型 艰难梭状芽胞杆菌毒素;艰难芽孢梭菌毒素 艰难梭菌毒素（艰难梭状芽胞杆菌、艰难芽孢梭菌） A+B tcdA+tcdB 基因

80677-8 Escherichia coli enterotoxigenic eltA+estB genes [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Escherichia coli enterotoxigenic (ETEC) heat-labile (LT) and heat-stable (ST) toxin genes, eltA and estB, in stool specimens by real-time PCR methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli enterotoxigenic eltA+estB genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
ETEC eltA+estB genes Stl Ql NAA+probe
Display Name
E. coli enterotoxigenic eltA+estB genes NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli enterotoxigenic eltA+estB genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.63
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli enterotoxigen eltA+estB-Gene:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Genes eltA+estB de la enterotoxina de Escherichia coli:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Genes enterotoxigénicos eltA + estB de Escherichia coli:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Escherichia coli entérotoxinogène eltA+estB gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli enterotossigeni geni eltA+estB:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: ETEC Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Escherichia coli enterotoxigene eltA + estB genen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: E.coli; EAEC ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 大肠埃希菌肠产毒素型 eltA+estB 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 产肠毒素性大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）;肠毒性大肠杆菌;肠产毒性大肠杆菌;ETEC 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 分子病理学 - 基因类 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）肠产毒素型（肠产毒素性、产肠毒素性、产肠毒素型、肠毒性、肠毒型、产肠毒性、产肠毒型） eltA+estB 基因;肠产毒素型大肠埃希菌 eltA+estB 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

80676-0 Escherichia coli O157 rfbE gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of targeted nucleic acid sequences in the Escherichia coli O157 rfbE gene in stool specimens by real-time PCR-based methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP207314-8   Escherichia coli O157 rfbE gene
The rfbE gene in Escherichia coli (E coli) O157 encodes perosamine synthase and is the first O157 Shiga toxin-producing E coli (STEC) rfb locus to be cloned and sequenced. PMID: 8890241 The rfbE gene is used in PCR assays to distinguish serotype O157 from non-O157 STEC in a clinical specimens. PMID: 16480968 Although rfbE is specific for serotype O157, it does not distinguish between O157:H7 and O157:non-H7 strains. E. coli O157:H7 (enterohemorrhagic E. coli or EHEC) is a well-known food-borne pathogen. E. coli O157:non-H7 strains are not classified as EHEC and their clinical significance is less clear. Such non-H7 strains have been isolated from asymptomatic patients, patients with diarrhea, as well as food and environmental sources. PMID: 21876740 Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli O157 rfbE gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
EC O157 rfbE gene Stl Ql NAA+probe
Display Name
E. coli O157 rfbE gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli O157 rfbE gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Order vs. Observation
Both
Common Test Rank Get Info
12493

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli O157 rfbE-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Gen rfbE Escherichia coli O157:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Gen rfbE de Escherichia coli O157:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Escherichia coli O157 rfbE gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli geni O157 rfbE:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Escherichia coli O157 rfbE-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: escherichia coli O157 rfbE gen ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 大肠埃希菌 O157 rfbE 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） O157 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） O157 rfbE 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

79386-9 Escherichia coli Stx1 toxin stx1 gene [Presence] in Stool by NAA with probe detection

Term Description

This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP262487-4   Escherichia coli Stx1 toxin stx1 gene
The Stx1 toxin A subunit is encoded by the stx1 gene [www.uniprot.org/uniprot/ ?query=stx1+escherichia+coli&sort=score] and the Stx2 toxin A subunit is encoded by the stx2 gene.[UniProt: K0JD26] Stx1a and Stx2a are produced by some serogroups of Escherichia coli (also known as Vero toxins and previously referred to as Shiga-like toxins) are two cytotoxins that cause hemorrhagic colitis (HC) and hemolytic uremic syndrome (HUS). The two toxins produce similar symptoms, but are immunologically unique. Both toxins are composed of a single copy of subunit A and five copies of subunit B. Stx1a and Stx1b induce host cell apoptosis by removing an adenine residue from the 28S rRNA of the 60S ribosome, with RNA-N-glycosidase activity provided by subunit A. The five B subunits bind to the host cell receptor present on endothelial cells. PMID: 25530917 Shigella toxin-producing Escherichia coli (STEC) has become a serious food-borne pathogen. Outbreaks of STEC have been associated with the consumption of pork products resulting in HC and HUS. STEC in swine has been demonstrated to cause edema disease. Epidemiological studies throughout the world have proven that STEC can be harbored and shed by domestic swine. PMID: 24397985 Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli Stx1 toxin stx1 gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
EC stx1 gene Stl Ql NAA+probe
Display Name
E. coli stx1 gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli stx1 toxin stx1 gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
Changed Component from "Bacterial shiga-like toxin 1 (stx1) gene" to "Escherichia coli shiga-like toxin 1 (stx1) gene" since stx1 is only produced by E.coli.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.; Updated Component from "Escherichia coli shiga-like toxin 1 (stx1) gene" based on the current E. coli nomenclature and LOINC model.
Order vs. Observation
Observation
Common Test Rank Get Info
4123

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
81659-5 Escherichia coli Stx1 and Stx2 toxin stx1 and stx2 genes panel - Stool by NAA with probe detection
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli Stx1 Toxin stx1-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Gen stx1 Escherichia coli:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Escherichia coli Toxina Stx1 Gen stx1:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Escherichia coli toxine stx1 gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli tossina Stx1, gene stx1:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Escherichia coli Stx1-toxine stx1-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 大肠埃希菌 Stx1 毒素 stx1 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） Stx1 毒素 stx1 基因;大肠埃希菌 stx1 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

79387-7 Escherichia coli Stx2 toxin stx2 gene [Presence] in Stool by NAA with probe detection

Term Description

This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP262477-5   Escherichia coli Stx2 toxin stx2 gene
The Stx1 toxin A subunit is encoded by the stx1 gene [www.uniprot.org/uniprot/ ?query=stx1+escherichia+coli&sort=score] and the Stx2 toxin A subunit is encoded by the stx2 gene.[UniProt: K0JD26] Stx1a and Stx2a are produced by some serogroups of Escherichia coli (also known as Vero toxins and previously referred to as Shiga-like toxins) are two cytotoxins that cause hemorrhagic colitis (HC) and hemolytic uremic syndrome (HUS). The two toxins produce similar symptoms, but are immunologically unique. Both toxins are composed of a single copy of subunit A and five copies of subunit B. Stx1a and Stx1b induce host cell apoptosis by removing an adenine residue from the 28S rRNA of the 60S ribosome, with RNA-N-glycosidase activity provided by subunit A. The five B subunits bind to the host cell receptor present on endothelial cells. PMID: 25530917 Shigella toxin-producing Escherichia coli (STEC) has become a serious food-borne pathogen. Outbreaks of STEC have been associated with the consumption of pork products resulting in HC and HUS. STEC in swine has been demonstrated to cause edema disease. Epidemiological studies throughout the world have proven that STEC can be harbored and shed by domestic swine. PMID: 24397985 Source: Regenstrief LOINC

Fully-Specified Name

Component
Escherichia coli Stx2 toxin stx2 gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
EC stx2 gene Stl Ql NAA+probe
Display Name
E. coli stx2 gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli stx2 toxin stx2 gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
Changed Component from "Bacterial shiga-like toxin 2 (stx2) gene" to "Escherichia coli shiga-like toxin 2 (stx2) gene" since stx1 is only produced by E.coli.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.; Updated Component from "Escherichia coli shiga-like toxin 2 (stx2) gene" based on the current E. coli nomenclature and LOINC model.
Order vs. Observation
Observation
Common Test Rank Get Info
4124

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
81659-5 Escherichia coli Stx1 and Stx2 toxin stx1 and stx2 genes panel - Stool by NAA with probe detection
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli Stx2 Toxin stx2-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Gen stx2 Escherichia coli:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Escherichia coli Toxina Stx2 Gen stx2:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Escherichia coli toxine stx2 gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli tossina Stx2, gene stx2:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Escherichia coli Stx2-toxine stx2-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 大肠埃希菌 Stx2 毒素 stx2 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） Stx2 毒素 stx2 基因;大肠埃希菌 stx2 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

80679-4 Escherichia coli Stx1 and Stx2 toxin stx1+stx2 genes [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in Escherichia coli shiga-like toxin 1 and 2 (stx1/stx2) genes in stool specimens by PCR-based methods. This assay does not differentiate between the two toxin genes. This term was created for, but not limited in use to, the xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP204844-7   Escherichia coli Stx1+Stx2 toxin stx1+stx2 genes
Shiga toxin producing E. coli (STEC) is also known as enterohemorrhagic E. coli (EHEC) and verotocix E. coli (VTEC). STEC are strains capable of producing Shiga toxin and typically cause blood diarrhea. Hemolytic-uremic syndrome complicates 6-9 percent of STEC infections overall and about 15 percent of STEC infections in children under age 10. STEC strains are typically have one or both stx genes that encode for Shiga Toxins 1 and 2. Source: LOINC partner 1

Fully-Specified Name

Component
Escherichia coli Stx1+Stx2 toxin stx1+stx2 genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
EC stx1+stx2 genes Stl Ql NAA+probe
Display Name
E. coli stx1+stx2 genes NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli stx1+Stx2 toxin stx1+stx2 genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.64
Change Reason
Updated Component from "Escherichia coli shiga-like toxin 1+2 (stx1+stx2) genes" based on the current E. coli nomenclature and LOINC model.
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli Stx1+Stx2-Toxine stx1+stx2-Gene:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Genes (stx1+stx2) de la toxina de Escherichia coli shiga 1+2+J8135:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Escherichia coli Stx1 + Stx2 toxina stx1 + genes stx2:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-CA French (Canada) Escherichia coli toxines stx1 + stx2 gènes:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-FR French (France) Escherichia coli toxines stx1 + stx2 gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli tossine shiga-like 1+2 (stx1 & stx2), geni:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Escherichia coli shiga-achtig toxine 1+2 (stx1+stx2) genen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: Escherichia coli shiga-like ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 大肠埃希菌 stx1+stx2 毒素 stx1+stx2 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 分子病理学 - 基因类 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）志贺样毒素（类志贺毒素、类志贺氏毒素） 1 与 2 stx1 与 stx2 基因;大肠埃希菌 stx1 与 stx2 毒素 stx1 与 stx2 基因;大肠埃希菌志贺样毒素 1 与 2 stx1 与 stx2 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）志贺样毒素（类志贺毒素、类志贺氏毒素） 1+2 stx1+stx2 基因;大肠埃希菌志贺样毒素 1+2 stx1+stx2 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

81285-9 Escherichia coli Stx1 and Stx2 toxin stx1 and stx2 genes [Identifier] in Stool by NAA with probe detection

Part Descriptions

LP208368-3   Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes
Shiga-like toxin is generated by some strains of Escherichia coli, known as Stx-producing E. coli (STEC). Shiga-like toxins are named for their similarity to the AB5-type shiga toxin produced by the bacteria Shigella dysenteriae. There are two primary types, known as Stx1 (also Stx1a or SLT1) and Stx2 (also Stx2a or SLT2). Variants of Stx1 and Stx2 have been identified but they are rarely found in clinical specimens and few are clinically significant. PMID: 25530917 Shiga-like toxins are associated with hemolytic-uremic syndrome (HUS) in which patients present with thrombocytopenia, hemolytic anemia, and kidney failure. PMID: 6131302 Source: Regenstrief LOINC

LP208368-3   Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes
Shiga toxin producing E. coli (STEC) is also known as enterohemorrhagic E. coli (EHEC) and verotocix E. coli (VTEC). STEC are strains capable of producing Shiga toxin and typically cause blood diarrhea. Hemolytic-uremic syndrome complicates 6-9 percent of STEC infections overall and about 15 percent of STEC infections in children under age 10. STEC strains are typically have one or both stx genes that encode for Shiga Toxins 1 and 2. Source: LOINC partner 1

Fully-Specified Name

Component
Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes
Property
Prid
Time
Pt
System
Stool
Scale
Nom
Method
Probe.amp.tar

Additional Names

Short Name
EC stx1 + stx2 genes Stl NAA+probe
Display Name
E. coli stx1 and stx2 genes NAA+probe Nom (Stl)
Consumer Name Alpha Get Info
Escherichia coli stx1 & stx2 toxin stx1 & stx2 genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73
Change Reason
Updated Component from "Escherichia coli shiga-like toxin 1 & 2 (stx1 & stx2) genes" based on the current E. coli nomenclature and LOINC model.
Order vs. Observation
Both
Common Test Rank Get Info
10727

Example Answer List LL1498-6

Answer Code Score Answer ID
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Shiga toxin 1 LA16137-4
Shiga toxin 2 LA16138-2
Shiga toxin 1+2 LA16139-0

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli Stx1 & Stx2-Toxine stx1 & stx2-Gene:Nachweis oder Identität:Zeitpunkt:Stuhl:Nominal:Zielfragmentamplifikation mit Sondendetektion
de-AT German (Austria) Synonyms: EHEC Toxine /ST PCR
es-ES Spanish (Spain) Genes (stx1+stx2) de la toxina de Escherichia coli shiga 1+2:Presencia o identidad:Punto temporal:Heces:Nom:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Escherichia coli Stx1 y Stx2 toxina genes stx1 y stx2:Presencia o identidad:Punto temporal:Heces:Nominal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Escherichia coli toxines stx1 et stx2 gènes:Identification:Ponctuel:Selle:Résultat nominal:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli tossine shiga-like 1 & 2 (stx1 & stx2), geni:Prid:Pt:Feci:Nom:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Escherichia coli shiga-achtig toxine1 & 2 (stx1 & stx2) genen:identificator:moment:feces:nominaal:probe-detectie
Synonyms: Escherichia coli shiga-like ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 大肠埃希菌志贺样毒素 1 与 2 stx1 与 stx2 基因:存在与否或特征标识:时间点:大便:名义型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 分子病理学 - 基因类 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）志贺样毒素（类志贺毒素、类志贺氏毒素） 1 与 2 stx1 与 stx2 基因;大肠埃希菌 stx1 与 stx2 毒素 stx1 与 stx2 基因;大肠埃希菌志贺样毒素 1 与 2 stx1 与 stx2 基因 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）志贺样毒素（类志贺毒素、类志贺氏毒素） 1+2 stx1+stx2 基因;大肠埃希菌志贺样毒素 1+2 stx1+stx2 基因 存在;存在与否;特征标识;身份;身份标识 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

97317-2 Escherichia coli enteroaggregative DNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component
Escherichia coli enteroaggregative DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
EAEC DNA Stl Ql NAA+probe
Display Name
E. coli enteroaggregative DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli enteroaggregative, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli enteroaggregativ DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Escherichia coli enteroagregativa (ECEA) ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN enteroagregativo de Escherichia coli:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-FR French (France) Escherichia coli entéro-aggrégatif ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli enteroaggregativi DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: EAEC Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) enteroaggregatieve Escherichia coli DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: E.coli; EAEC ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 肠聚集性大肠埃希菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 肠聚集性大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）;EAEC 脱氧核糖核酸探针

97318-0 Escherichia coli enteropathogenic DNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component
Escherichia coli enteropathogenic DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
EPEC DNA Stl Ql NAA+probe
Display Name
E. coli enteropathogenic DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli enteropathogenic, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli enteropathogen DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Escherichia coli enteropatogénica (ECEP) ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN enteropatógeno de Escherichia coli:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-FR French (France) Escherichia coli entéropathogène ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli enteropatogeni DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: EPEC Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) enteropathogene Escherichia coli DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: E.coli; EAEC ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 肠致病性大肠埃希菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 肠致病性大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）;EPEC 脱氧核糖核酸探针

97319-8 Escherichia coli enterotoxigenic DNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component
Escherichia coli enterotoxigenic DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
ETEC DNA Stl Ql NAA+probe
Display Name
E. coli enterotoxigenic DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli enterotoxigenic, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli enterotoxigen DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Escherichia coli enterotoxigénica (ETEC) ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN enterotoxigénico de Escherichia coli:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-FR French (France) Escherichia coli entérotoxinogène ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Escherichia coli enterotossigeni DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: ETEC Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) enterotoxigene Escherichia coli DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: E.coli; EAEC ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 产肠毒素性大肠埃希菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 产肠毒素性大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌）;肠毒性大肠杆菌;肠产毒性大肠杆菌;ETEC 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

97320-6 Escherichia coli O157 DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP36684-6   Escherichia coli O157
Escherichia coli O157 is an enterohemorrhagic strain of the bacterium Escherichia coli and an emerging cause of foodborne illness. An estimated 73,000 cases of infection and 61 deaths occur each year in the United States alone, although it is rarer in less industrialized countries. Infection often leads to bloody diarrhea, and occasionally to kidney failure. Most illness has been associated with eating undercooked, contaminated ground beef, although it is also transmitted by person-to-person contact, produce, drinking unpasteurized milk or swimming in or drinking contaminated water. The 2006 United States E. coli outbreak was linked to a large quantity of spinach contaminated with this strain. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Escherichia coli O157 (Wikipedia)

LP36684-6   Escherichia coli O157
A verocytotoxin-producing serogroup belonging to the O subfamily of Escherichia coli which has been shown to cause severe food-borne disease. Recently, a strain from this serogroup, serotype H7 which produces Shiga-like toxins, has been linked to human disease outbreaks resulting from contamination of foods from bovine origin. This serogroup causes hemorrhagic and HEMOLYTIC-UREMIC SYNDROME and predominantly hemorrhagic diarrhea and GASTROENTERITIS in children. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Escherichia coli O157 DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
E coli O157 DNA Stl Ql NAA+probe
Display Name
E. coli O157 DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli O157, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Escherichia coli O157 DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Escherichia coli O157 ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN de Escherichia coli O157:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-BE French (Belgium) Escherichia coli O157 ADN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-FR French (France) Escherichia coli O157 ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-CA French (Canada) Escherichia coli O157 , ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Escherichia coli O157 DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Escherichia coli O157 DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
ru-RU Russian (Russian Federation) Escherichia coli O157 ДНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Escherichia coli O157 DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 大肠埃希菌 O157 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） O157 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

70296-9 Plesiomonas shigelloides DNA [Presence] in Stool by NAA with probe detection

Term Description

This term was created for a RT-PCR test that identifies the 23S ribosomal subunit of Plesiomonas shigelloides DNA using fluorescent probes. Results (positive/negative) are based on the cross threshold (Ct) value of the amplified DNA.
Source: Regenstrief LOINC

Part Descriptions

LP146108-8   Plesiomonas shigelloides
Plesiomonas shigelloides is a Gram-negative, rod-shaped bacterium which has been isolated from freshwater, freshwater fish, shellfish, and from many types of animals. Human exposure to P. shigelloides is likely through contaminated water which has been used for drinking, recreation, or to rinse foods that are eaten without cooking. Not all cases of ingested P. shigelloides result in illness, and the dose needed for clinical symptoms is presumed to be at least a million organisms. Symptomatic disease is usually self-limiting, and is characterized by fever, chills, abdominal pain, nausea, watery diarrhea, and vomiting. Symptoms typically begin 20-24 hours after consumption of contaminated food or water and can last from one day to one week. (http://www.fda.gov/Food/FoodborneIllnessContaminants/CausesOfIllnessBadBugBook/ucm070530.htm) Source: Regenstrief LOINC, FDA: Plesiomonas shigelloides gastroenteritis

Fully-Specified Name

Component
Plesiomonas shigelloides DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
P shigelloides DNA Stl Ql NAA+probe
Display Name
P. shigelloides DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Plesiomonas shigelloides, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Both
Common Test Rank Get Info
3661

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Plesiomonas shigelloides DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Plesiomonas shigelloides ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN de Plesiomonas shigelloides:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Plesiomonas shigelloides ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Plesiomonas shigelloides DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Plesiomonas shigelloides DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
pt-BR Portuguese (Brazil) Plesiomonas shigelloides DNA:Limiar:Pt:Fezes:Ord:Sonda com limite de detecção da amplificação de alvo
ru-RU Russian (Russian Federation) Plesiomonas shigelloides ДНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Plesiomonas shigelloides DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 类志贺毗邻单胞菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 邻单胞菌属;毗邻单胞菌属;类志贺邻单胞菌

97313-1 Salmonella sp DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP16750-9   Salmonella sp
Salmonella are gram-negative, flagellated, facultative intracellular, anaerobic bacilli with O, H and Vi surface antigens. Once ingested, Salmonella survives the gastric acid barrier and penetrates the epithelial cells of the small and large intestines. The invasion of the epithelial cells stimulates the release of cytokines and a subsequent inflammatory response leading to diarrhea and possible ulceration of the mucosa.[NCBI Books: 8435] Antibodies to Salmonella are the body's defense when the bacteria is outside of its host cell which occurs at the initial infection and when the bacillus moves from cell to cell. There is a 10 minute window of opportunity when the Salmonella bacillus leaves the macrophage to invade another. During that time, antibodies and complement work to eradicate the bacilli, but some of the extracellular bacilli will evade attack and enter another host cell. Studies have shown that vaccines play an important role in the fight against typhoid fever. PMID: 25566248 There are two species of Salmonella: S. enterica and S. bongori. These species can be further subclassified into subspecies and serovars.

Veterinary Medicine:
Salmonella infection is most often caused by the serovars Salmonella choleraesuis, and Salmonella typhimurium and less often by Salmonella derby. Infected pigs can be asymptomatic and become carriers of S. choleraesius. Typically, the bacteria survive in the mesenteric lymph nodes that drain into the intestines, and are not shed in the feces unless the pig is under stress. The carrier state lasts for weeks to months and is self-limiting. Severe infection with S. choleraesius can be serious starting out as septicemia and progressing to pneumonia and enteritis. The infection can spread to various tissues including to the central nervous system leading to meningitis and to the joints where it manifests as arthritis. Severe infections with S. choleraesius occurs at any age, but most often in pigs 12-14 weeks of age.[http://www.thepigsite.com/pighealth/article/357/salmonellosis/] Source: Regenstrief LOINC

Fully-Specified Name

Component
Salmonella sp DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Salmonella DNA Stl Ql NAA+probe
Display Name
Salmonella sp DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Salmonella sp, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Salmonella sp DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Salmonella sp ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN de Salmonella sp:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-FR French (France) Salmonella ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-BE French (Belgium) Salmonella sp ADN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-CA French (Canada) Salmonella sp , ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Salmonella sp DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Salmonella sp. DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
ru-RU Russian (Russian Federation) Salmonella sp ДНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Salmonella sp DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 沙门菌属单个未知种 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 沙门氏菌 DNA 沙门氏菌;沙门氏菌属;沙门菌;沙门菌单个未知种 沙门氏菌属 沙门菌 DNA 沙门菌属 DNA 物种 生物种 经过扩增的 脱氧核糖核酸探针

80678-6 Salmonella sp invA+fliC genes [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in Salmonella invA+fliC genes in stool specimens by real-time PCR methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component
Salmonella sp invA+fliC genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Salmonella sp invA+fliC Stl Ql NAA+probe
Display Name
Salmonella sp invA+fliC genes NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Salmonella species invA+fliC genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.63
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Salmonella sp invA+fliC-Gene:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Genes invA+flicC de Salmonella sp:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Genes de Salmonella sp invA + fliC:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Salmonella invA+fliC gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Salmonella sp invA+geni fliC:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Salmonella sp. invA + fliC-genen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 沙门菌属 invA+fliC 基因类:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 分子病理学 - 基因类 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 沙门氏菌;沙门氏菌属;沙门菌;沙门菌单个未知种 沙门氏菌属 沙门菌属（沙门氏菌、沙门氏菌属、沙门菌） invA+fliC 基因类（基因） 物种 生物种 经过扩增的 脱氧核糖核酸探针

79383-6 Salmonella sp rpoD gene [Presence] in Stool by NAA with probe detection

Term Description

This test detects the rpoD gene found in species of Salmonella. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Salmonella sp rpoD gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Salmonella sp rpoD Stl Ql NAA+probe
Display Name
Salmonella sp rpoD gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Salmonella species rpoD gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
4117

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Salmonella sp rpoD-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) gen rpoD de Salmonella sp:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Gen de Salmonella sp rpoD:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Salmonella rpoD gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Salmonella sp rpoD, gene:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Salmonella sp. rpoD-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar Salmonella sp rpoD gen
tr-TR Turkish (Turkey) Salmonella sp rpoD geni:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 沙门菌属 rpoD 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 沙门氏菌;沙门氏菌属;沙门菌;沙门菌单个未知种 沙门氏菌属 沙门菌属（沙门氏菌、沙门氏菌属、沙门菌） rpoD 基因 物种 生物种 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

81657-9 Salmonella sp spaO gene [Presence] in Stool by NAA with probe detection

Term Description

This test targets the Salmonella sp SpaO gene. The SpaO gene is involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella sp into mammalian cells.[http://www.uniprot.org/uniprot/P40699] This term was created for, but is not limited in use to, the submitter's BD MAX Enteric Bacterial test kit, that is a diagnostic test for the direct qualitative detection of enteric bacterial pathogens.
Source: Regenstrief LOINC

Part Descriptions

LP208637-1   Salmonella sp spaO gene
Salmonella is a rod-shaped, motile bacterium, nonmotile (exceptions S. gallinarum and S. pullorum), nonsporeforming and Gram-negative. There is a widespread occurrence in animals, especially in poultry and swine. Environmental sources of the organism include water, soil, insects, factory surfaces, kitchen surfaces, animal feces, raw meats, raw poultry, and raw seafoods, to name only a few. S. typhi and the paratyphoid bacteria are normally caused septicemic and produce typhoid or typhoid-like fever in humans. Other forms of salmonellosis generally produce milder symptoms. Source: U.S. Food and Drug Administration, Bad Bug Book BBB - Salmonella spp

Fully-Specified Name

Component
Salmonella sp spaO gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Salmonella sp spaO Stl Ql NAA+probe
Display Name
Salmonella sp spaO gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Salmonella species spaO gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.63
Order vs. Observation
Observation

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Salmonella sp spaO-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
de-AT German (Austria) Synonyms: Salmonella sp/ST PCR
es-ES Spanish (Spain) Gen spaO de Salmonella sp:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Gen de Salmonella sp spaO:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-CA French (Canada) Salmonella spaO gène:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-FR French (France) Salmonella spaO gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Salmonella sp spaO gene:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Salmonella sp. spaO-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar Salmonella sp spaO gen
zh-CN Chinese (China) 沙门菌属 spaO 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 沙门氏菌;沙门氏菌属;沙门菌;沙门菌单个未知种 沙门氏菌属 沙门菌属（沙门氏菌、沙门氏菌属、沙门菌） spaO 基因 物种 生物种 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

70242-3 Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection

Part Descriptions

LP145956-1   Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
The invasion plasmid antigen H (ipaH) gene is a multicopy gene exclusively found in all Shigella and enteroinvasive E. coli (EIEC). Shigella and EIEC both evolved from nonpathogenic Escherichia coli, and sequencing of multiple housekeeping genes indicates that EIEC is genetically related to Shigella. Shigella causes bacillary dysentery with symptoms including abdominal cramps, nausea, fever and a bloody and mucus diarrhea. By testing for the absence of lysine decarboxylase (LDC) activity and presence of the IpaH gene, Shigella and EIEC can be differentiated from non-enteroinvasive E. coli. PMID: 21901636 Source: Regenstrief LOINC, PMID: 21901636

Fully-Specified Name

Component
Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Shigella sp+EIEC ipaH Stl Ql NAA+probe
Display Name
Shigella species+EIEC invasion plasmid antigen H ipaH gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Shigella Species+EIEC Invasion Plasmid Antigen H IpaH gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Both
Common Test Rank Get Info
3524

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Shigella species+EIEC-invasion plasmid antigen H (ipaH)-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
de-AT German (Austria) Synonyms: SSp/EIEC ql/ST PCR
es-ES Spanish (Spain) Gen antígeno H plasmídico invasor bacterial (ipaH):PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Especies de Shigella + gen del antígeno H (ipaH) del plásmido invasor EIEC:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-CA French (Canada) Shigella+Escherichia coli entéroinvasif ipaH gène:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-FR French (France) Shigella+Escherichia coli entéroinvasif ipaH gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Specie shigella e Escherichia Coli enteroinvasive antigene H plasmidico di invasione batterica (ipaH), gene:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Gene di antigene H plasmidico di invasione batteri Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Shigella sp. + bacterieel invasieplasmide antigeen H (ipaH) gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
pt-BR Portuguese (Brazil) Plasmídeo invasão bacteriana antígeno H (ipaH) gene::Pt:Fezes:Ord:Sonda com limite de detecção da amplificação de alvo
ru-RU Russian (Russian Federation) Бактериальной инвазии плазмидный антиген H (ipaH) ген:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Bakteriyel invazyon plasmid antigen H (ipaH) geni:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 志贺菌+肠侵袭性大肠埃希菌侵袭质粒抗原 H (ipaH) 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: Ag H 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 志贺氏杆菌 志贺氏杆菌属 志贺氏细菌性痢疾 志贺氏菌属 志贺氏菌病 志贺氏菌痢疾 志贺菌 志贺菌属 志贺菌属（志贺菌、志贺氏菌属、志贺氏菌）+EIEC 侵袭质粒抗原 H (ipaH) 基因;细菌侵袭质粒抗原 H (ipaH) 基因;细菌入侵质粒抗原 H (ipaH) 基因;细菌侵袭性质粒抗原 H (ipaH) 基因;invasion plasmid antigen H;ipaH;侵袭性质粒抗原 H;侵袭质粒抗原 H;入侵质粒抗原 H 志贺菌病 志贺菌痢疾 扩增型 扩增性 抗体原 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

80680-2 Vibrio cholerae toxin ctxA gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Vibrio cholerae toxin subunit A (ctxA) gene in stool specimens by PCR-based methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component
Vibrio cholerae toxin ctxA gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Vibrio chol toxin ctxA Stl Ql NAA+probe
Display Name
V. cholerae toxin ctxA gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Vibrio cholerae toxin ctxA gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.64
Change Reason
Updated Component from "Vibrio cholerae toxin subunit A (ctxA)" based on the current LOINC model.
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG41625-1 Vibrio cholerae

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Vibrio-cholerae-Toxin ctxA-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Gen (ctxA) de la subunidad A de la toxina del Vibrio cholerae:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Gen ctxA de la toxina de Vibrio cholerae:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Vibrio cholerae toxine ctxA gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Vibrio cholerae, gene tossina subunità A (ctxA):PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Gene di tossina subunità A di Vibrio cholerae (ctx Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Tossina di Vibrio cholerae
nl-NL Dutch (Netherlands) Vibrio cholerae toxine subeenheid A (ctxA) gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 霍乱弧菌毒素 ctxA 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因 霍乱 霍乱弧菌毒素 A ctxA 基因;霍乱弧菌毒素亚单位（亚基） A ctxA 基因

79384-4 Vibrio cholerae+parahaemolyticus rfbL+trkH+tnaA genes [Presence] in Stool by NAA with probe detection

Term Description

This assay includes three separate nucleic acid targets for Vibrio cholerae and parahaemolyticus: the rfbL gene, the trkH gene, and tnaA gene. If any one of the markers are found the result is considered to be positive for Vibrio. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Vibrio cholerae+parahaemolyticus rfbL+trkH+tnaA genes
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
V chol+para rfbL+trkH+tnaA Stl Ql NAA+pr
Display Name
V. cholerae+parahaemolyticus rfbL+trkH+tnaA genes NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Vibrio cholerae+parahaemolyticus rfbL+trkH+tnaA genes, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
4121

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) genes rfbL+trkH+tnaA de Vibrio cholerae+parahaemolyticus:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Vibrio cholerae + parahaemolyticus genes rfbL + trkH + tnaA:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Vibrio cholerae+Vibrio parahaemolyticus rfbL+trkH+tnaA gènes:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Vibrio cholerae+parahaemolyticus rfBL+ trkH+geni tnaA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Vibrio cholerae + parahaemolyticus rfbL + trkH + tnaA genen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
tr-TR Turkish (Turkey) Vibrio cholerae+parahaemolyticus rfbL+trkH+tnaA genleri:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 霍乱弧菌+副溶血弧菌 rfbL+trkH+tnaA 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 分子病理学 - 基因类 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 霍乱 霍乱弧菌+副溶血弧菌（副溶血性弧菌） rfbL+trkH+tnaA 基因

92686-5 Vibrio cholerae+parahaemolyticus+vulnificus DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP212411-5   Vibrio cholerae+parahaemolyticus+vulnificus
Vibrio is a genus of Gram-negative bacteria associated with gastroenteritis. Pathogenic Vibrio species include V. cholerae (causes cholera), V. parahaemolyticus, and V. vulnificus. Pathogenic species can cause foodborne illness, usually associated with eating undercooked seafood. PMID: 16151093 Source: Regenstrief LOINC

Fully-Specified Name

Component
Vibrio cholerae+parahaemolyticus+vulnificus DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
V chol+para+vul DNA Stl Ql NAA+probe
Display Name
V. cholerae+parahaemolyticus+vulnificus DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Vibrio cholerae+parahaemolyticus+vulnificus, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Vibrio cholerae+parahaemolyticus+vulnificus ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Vibrio cholerae + parahaemolyticus + ADN vulnificus:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Vibrio cholerae+parahaemolyticus+vulnificus ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Vibrio cholerae+parahaemolyticus+vulnificus DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Vibrio cholerae + parahaemolyticus + vulnificus DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 霍乱弧菌+副溶血弧菌+创伤弧菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 霍乱 霍乱弧菌+副溶血弧菌（副溶血性弧菌）+创伤弧菌

97314-9 Vibrio cholerae DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP16778-0   Vibrio cholerae
Vibrio cholerae (also Kommabacillus) is a gram negative comma-shaped bacterium with a polar flagellum that causes cholera in humans. V. cholerae and other species of the genus Vibrio belong to the gamma subdivision of the Proteobacteria. There are two major biotypes of V. cholerae, classical and El Tor, and numerous serogroups. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

Fully-Specified Name

Component
Vibrio cholerae DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
V cholerae DNA Stl Ql NAA+probe
Display Name
V. cholerae DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Vibrio cholerae, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG41625-1 Vibrio cholerae

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Vibrio cholerae DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Vibrio cholerae ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN de Vibrio cholerae:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-BE French (Belgium) Vibrion cholérique ADN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-FR French (France) Vibrio cholerae ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-CA French (Canada) Vibrion cholérique , ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Vibrio cholerae DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Vibrio cholerae DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
ru-RU Russian (Russian Federation) Vibrio cholerae ДНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Vibrio cholerae DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 霍乱弧菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 霍乱

97315-6 Vibrio parahaemolyticus DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP35813-2   Vibrio parahaemolyticus
A species of bacteria found in the marine environment, sea foods, and the feces of patients with acute enteritis. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Vibrio parahaemolyticus DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
V parahaem DNA Stl Ql NAA+probe
Display Name
V. parahaemolyticus DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Vibrio parahaemolyticus, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Vibrio parahaemolyticus DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Vibrio parahaemolyticus ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN de Vibrio parahaemolyticus:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-FR French (France) Vibrio parahaemolyticus ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-BE French (Belgium) Vibrio parahaemolyticus ADN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-CA French (Canada) Vibrio parahaemolyticus , ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Vibrio parahaemolyticus DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Vibrio parahaemolyticus DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
ru-RU Russian (Russian Federation) Vibrio parahaemolyticus ДНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Vibrio parahaemolyticus DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 副溶血弧菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 副溶血性弧菌 副溶血性弧菌 DNA 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

97316-4 Vibrio vulnificus DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP423003-5   Vibrio vulnificus
Vibrio is a genus of Gram-negative bacteria associated with gastroenteritis. Pathogenic Vibrio species include V. cholerae (causes cholera), V. parahaemolyticus, and V. vulnificus. Pathogenic species can cause foodborne illness, usually associated with eating undercooked seafood. PMID: 16151093 Source: Regenstrief LOINC

Fully-Specified Name

Component
Vibrio vulnificus DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
V. vulnificus DNA Stl Ql NAA+probe
Display Name
V. vulnificus DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Vibrio vulnificus, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Vibrio vulnificus DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-MX Spanish (Mexico) ADN de Vibrio vulnificus:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
es-ES Spanish (Spain) Vibrio vulnificus ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
fr-FR French (France) Vibrio vulnificus ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Vibrio vulnificus DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Vibrio vulnificus DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 创伤弧菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 海洋弧菌 经过扩增的 脱氧核糖核酸探针

92723-6 Yersinia enterocolitica DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP17258-2   Yersinia enterocolitica
A species of the genus Yersinia, isolated from both man and animal. It is a frequent cause of bacterial gastroenteritis in children. Source: National Library of Medicine, MeSH 2006

LP17258-2   Yersinia enterocolitica
Yersinia enterocolitica is a species of gram-negative coccobacillus-shaped bacterium, belonging to the family Enterobacteriaceae. Primarily a zoonotic disease (cattle, deer, pigs, and birds), animals which recover frequently become asymptomatic carriers of the disease.
Yersinia enterocolitica is a heterogeneous group of strains, classified into 6 biogroups, and into more than 57 O serogroups. The human pathogenic strains most frequently isolated worldwide belong to serogroups O:3, O:5,27, O:8 and O:9. The major route of Y. enterocolitica infection is through contaminated foods or causing gastrointestinal infections which are usually self-limiting. PMID: 22019131 Source: Regenstrief LOINC, PMID: 22019131

Fully-Specified Name

Component
Yersinia enterocolitica DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Y enterocol DNA Stl Ql NAA+probe
Display Name
Y. enterocolitica DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Yersinia enterocolitica, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Observation

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Yersinia enterocolitica DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Yersinia enterocolitica ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN de Yersinia enterocolitica:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Yersinia enterocolitica ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-BE French (Belgium) Yersinia enterocolitica ADN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-CA French (Canada) Yersinia enterocolitica , ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Yersinia enterocolitica DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Yersinia enterocolitica DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
ru-RU Russian (Russian Federation) Yersinia enterocolitica ДНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Yersinia enterocolitica DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 小肠结肠炎耶尔森氏菌 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 小肠结肠炎耶尔森菌 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针

79385-1 Yersinia enterocolitica recN gene [Presence] in Stool by NAA with probe detection

Term Description

This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Yersinia enterocolitica recN gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Y entero recN Stl Ql NAA+probe
Display Name
Y. enterocolitica recN gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Yersinia enterocolitica recN gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
4122

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Yersinia enterocolitica recN-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) gen recN de Yersinia enterocolitica:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Gen recN de Yersinia enterocolitica:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Yersinia enterocolitica recN gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Yersinia enterocolitica, gene recN:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Yersinia enterocolitica recN-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar yersinia enterocolitica recN gen
tr-TR Turkish (Turkey) Yersinia enterocolitica recN geni:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 小肠结肠炎耶尔森氏菌 recN 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 小肠结肠炎耶尔森氏菌（小肠结肠炎耶尔森菌） recN 基因 小肠结肠炎耶尔森菌 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

92697-2 Gastrointestinal parasitic pathogens panel - Stool by NAA with probe detection

Term Description

This panel contains terms to report qualitative results for a variety of parasitic gastrointestinal pathogens.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Gastrointestinal parasitic pathogens panel
Property
-
Time
Pt
System
Stool
Scale
-
Method
Probe.amp.tar

Additional Names

Short Name
GI parasitic pathogens Pnl Stl NAA+probe
Display Name
Gastrointestinal parasitic pathogens panel NAA+probe (Stl)
Consumer Name Alpha Get Info
Gastrointestinal parasitic pathogens panel, Stool

Basic Attributes

Class
PANEL.MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.70
Change Reason
Release 2.70: DefinitionDescription: Removed vendor-specific information from the term description.;
Order vs. Observation
Order
Panel Type
Panel

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Panel de patógenos parasitarios gastrointestinales:Propiedades mixtas (sólo paneles):Punto temporal:Heces:-:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Panel de patógenos parasitarios gastrointestinales:-:Punto temporal:Heces:-:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Parasites pathogènes gastrointestinaux panel:-:Ponctuel:Selle:-:PCR amplification de cible
it-IT Italian (Italy) Patogeni gastrointestinali, panel parassiti:-:Pt:Feci:-:Sonda.amp.tar
Synonyms: Microbiologia Panel parassiti per patogeni gastrointestinali Punto nel tempo (episodio) Set di prescrizione microbiologia Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) gastro-intestinaal parasitair pathogeen panel:-:moment:feces:-:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 胃肠道寄生虫性病原体类组套:-:时间点:大便:-:探针法.基因扩增.靶向
Synonyms: 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 医嘱套餐 医嘱套餐类 医嘱套餐组 医嘱组 医嘱组.微生物学;实验室组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目）类.微生物学试验;医嘱组.微生物学试验;医嘱组类.微生物学;医嘱组类.微生物学试验;实验室医嘱组类.微生物学;微生物学医嘱组;微生物学医嘱组类 医嘱组合 医嘱组合类 医嘱组套 医嘱组套类 医嘱组类 多重;多重型;多重标尺类型;多重精度类型 套餐 套餐医嘱 套餐医嘱组 套餐医嘱组类 实验室医嘱套餐 实验室医嘱套餐类 实验室医嘱组 实验室医嘱组合类 实验室医嘱组套 实验室医嘱组套类 实验室套餐医嘱组 实验室套餐医嘱组类 实验室检验项目医嘱组合类 实验室检验项目组合类 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 检验医嘱组合类 检验项目医嘱组合类 检验项目组合类 组 组合 组合医嘱 组合类 组套 经过扩增的 胃肠道 胃肠道（消化道）寄生虫性（寄生虫、寄生虫类）病原体类（病原体、致病菌、病原物、病原菌、病原生物）组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目） 脱氧核糖核酸探针

80681-0 Cryptosporidium parvum+hominis oocyst wall protein COWP gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Cryptosporidium oocyst wall protein (COWP) gene of C parvum and C hominis in stool specimens by PCR-based methods. This assay does not differentiate between the two species. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component
Cryptosporidium parvum+hominis oocyst wall protein (COWP) gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
C parvum+hominis COWP Stl Ql NAA+probe
Display Name
C. parvum+hominis oocyst wall protein COWP gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Cryptosporidium parvum+hominis oocyst wall protein (COWP) gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.65
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Gen de la proteína de la pared de los ooquistes de Cryptosporidium parvum+hominis (COWP):PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Cryptosporidium parvum + gen de la proteína de la pared del oocisto de hominis (COWP):Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Cryptosporidium parvum+Cryptosporidium hominis oocyst protéine de paroi (COWP) gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Cryptosporidium parvum+hominis oocisti proteina di parete (COWP) gene:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Cryptosporidium parvum + hominis oocyst wall proteïne (COWP) gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 小球隐孢子虫+人类隐孢子虫卵囊壁蛋白 (COWP) 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: PR;Prot;成分 - 化学 - 蛋白质类;蛋白;朊;蛋白质类;蛋白质类物质 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 小球隐孢子虫（小隐孢子虫、微小隐孢子虫）+人类隐孢子虫（人隐孢子虫） 小球隐孢子虫（小隐孢子虫、微小隐孢子虫）+人类隐孢子虫（人隐孢子虫）卵囊壁蛋白（卵囊囊壁蛋白） (COWP) 基因 小隐孢子虫;微小隐孢子虫 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因 隐孢子虫属 隐孢子虫病 隐孢球虫 隐孢球虫病

80682-8 Entamoeba histolytica 18S rRNA [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Entamoeba histolytica 18S ribosomal RNA in stool specimens by real-time PCR methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP21259-4   Entamoeba
A genus of ameboid protozoa characterized by the presence of beaded chromatin on the inner surface of the nuclear membrane. Its organisms are parasitic in invertebrates and vertebrates, including humans. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Entamoeba histolytica 18S rRNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
E histolytica 18S rRNA Stl Ql NAA+probe
Display Name
E. histolytica 18S rRNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Entamoeba histolytica 18S, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.63
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Entamoeba histolytica 18S rRNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Entamoeba histolytica 18S rRNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ARNr de Entamoeba histolytica 18S:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Entamoeba histolytica ARNr 18S:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Entamoeba histolytica 18S rRNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
zh-CN Chinese (China) 溶组织内阿米巴 18S rRNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: Gen-Probe rRNA 探针法.扩增.靶向 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 内变形虫 内变形虫属 内阿米巴属 变形虫 变形虫属 基因探针 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 核糖体 RNA 探针法.基因扩增.靶向 核糖体 RNA 探针法.扩增.靶向 核糖体核糖核酸 探针法.基因扩增.靶向 核糖体核糖核酸 探针法.扩增.靶向 核糖体核糖核酸;核糖核酸 RNA 核蛋白体 RNA 核蛋白体 RNA 探针法.基因扩增.靶向 核蛋白体 RNA 探针法.扩增.靶向 核蛋白体 RNA（Ribosomal RNA，RRNA） 核蛋白体核糖核酸 核醣体 RNA 溶组织内阿米巴（溶组织肠阿米巴） 18S;溶组织肠阿米巴 18S;变形虫病;阿米巴病 溶组织肠阿米巴;变形虫病;阿米巴病 经过扩增的 肠阿米巴属 脱氧核糖核酸探针 阿米巴

80683-6 Giardia lamblia 18S rRNA [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Giardia lamblia 18S ribosomal RNA in stool specimens by real-time PCR methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component
Giardia lamblia 18S rRNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
G lamblia 18S rRNA Stl Ql NAA+probe
Display Name
G. lamblia 18S rRNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Giardia lamblia 18S, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.63
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG41616-0 Giardia lamblia

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Giardia lamblia 18S rRNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Giardia Lamblia 18S rRNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ARNr 18S de Giardia lamblia:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Giardia lamblia ARnr 18S:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Giardia lamblia 18S rRNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Giardia lamblia 18S rRNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar ribosomaal RNA
zh-CN Chinese (China) 蓝氏贾第鞭毛虫 18S rRNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: Gen-Probe rRNA 探针法.扩增.靶向 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 基因探针 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 核糖体 RNA 探针法.基因扩增.靶向 核糖体 RNA 探针法.扩增.靶向 核糖体核糖核酸 探针法.基因扩增.靶向 核糖体核糖核酸 探针法.扩增.靶向 核糖体核糖核酸;核糖核酸 RNA 核蛋白体 RNA 核蛋白体 RNA 探针法.基因扩增.靶向 核蛋白体 RNA 探针法.扩增.靶向 核蛋白体 RNA（Ribosomal RNA，RRNA） 核蛋白体核糖核酸 核醣体 RNA 梨形鞭毛虫 梨形鞭毛虫属 梨形鞭毛虫病 经过扩增的 脱氧核糖核酸探针 蓝氏贾第虫 蓝氏贾第鞭毛虫（蓝氏贾第虫） 18S;蓝氏贾第鞭毛虫 18S 贾第虫 贾第虫病 贾第鞭毛虫属 贾第鞭毛虫病

97321-4 Cyclospora cayetanensis DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP14898-8   Cyclospora cayetanensis
Cyclospora cayetanensis is a protozoan that causes disease in humans, and perhaps other primates. It has been linked in the United States from fecally-contaminated imported raspberries and was virtually unknown before about 1990, but has been on the rise since. The health risk associated with the disease is usually confined to adult foreigners visiting endemic regions and acquiring the infection: this is why C. cayetanensis has been labeled as causing "traveler's diarrhea."

This species was placed in the Cyclospora genus because of the spherical shape of its sporocysts Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

Fully-Specified Name

Component
Cyclospora cayetanensis DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
C cayetanensis DNA Stl Ql NAA+probe
Display Name
C. cayetanensis DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Cyclospora cayetanensis, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.70
Order vs. Observation
Both

Example Answer List LL2451-4

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Undetermined LA14100-4

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG41642-6 Cyclospora

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Cyclospora cayetanenis ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ADN de Cyclospora cayetanensis:PrThr:Punto temporal:Heces:Ordinal:Probe.amp.tar
fr-FR French (France) Cyclospora cayetanensis ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-BE French (Belgium) Cyclospora cayetanensis ADN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-CA French (Canada) Cyclospora cayetanensis , ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Cyclospora cayetanensis DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Cyclospora cayetanenis Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Cyclospora cayetanensis DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
ru-RU Russian (Russian Federation) Cyclospora cayetanensis ДНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Siklospora cayetanensis DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 卡晏圆孢子虫 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: Cyclospora cayetanensis (圆孢子虫) DNA Cyclospora cayetanensis;圆孢子虫;卡晏圆孢子虫;卡晏环孢子球虫;卡晏环孢子虫;卡耶潭圆孢球虫;卡耶塔圆孢子虫 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 圆孢子虫病 圆孢球虫 圆孢球虫病 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 环孢子虫 环孢子虫病 环孢属 环孢菌 环孢菌病 环孢虫 经过扩增的 脱氧核糖核酸探针

92696-4 Gastrointestinal viral pathogens panel - Stool by NAA with probe detection

Term Description

This panel contains terms to report qualitative results for a variety of viral gastrointestinal pathogens.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Gastrointestinal viral pathogens panel
Property
-
Time
Pt
System
Stool
Scale
-
Method
Probe.amp.tar

Additional Names

Short Name
GI viral pathogens Pnl Stl NAA+probe
Display Name
Gastrointestinal viral pathogens panel NAA+probe (Stl)
Consumer Name Alpha Get Info
Gastrointestinal viral pathogens panel, Stool

Basic Attributes

Class
PANEL.MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.70
Change Reason
Release 2.70: DefinitionDescription: Removed vendor-specific information from term description;
Order vs. Observation
Order
Panel Type
Panel

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Panel de patógenos virales gastrointestinales:Propiedades mixtas (sólo paneles):Punto temporal:Heces:-:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Panel de patógenos virales gastrointestinales:-:Punto temporal:Heces:-:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Virus pathogènes gastrointestinaux panel:-:Ponctuel:Selle:-:PCR amplification de cible
it-IT Italian (Italy) Patogeni gastrointestinali, panel virus:-:Pt:Feci:-:Sonda.amp.tar
Synonyms: Microbiologia Panel virus per patogeni gastrointestinali Punto nel tempo (episodio) Set di prescrizione microbiologia Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) gastro-intestinaal viraal pathogeen panel:-:moment:feces:-:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 胃肠道病毒性病原体类组套:-:时间点:大便:-:探针法.基因扩增.靶向
Synonyms: 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 医嘱套餐 医嘱套餐类 医嘱套餐组 医嘱组 医嘱组.微生物学;实验室组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目）类.微生物学试验;医嘱组.微生物学试验;医嘱组类.微生物学;医嘱组类.微生物学试验;实验室医嘱组类.微生物学;微生物学医嘱组;微生物学医嘱组类 医嘱组合 医嘱组合类 医嘱组套 医嘱组套类 医嘱组类 多重;多重型;多重标尺类型;多重精度类型 套餐 套餐医嘱 套餐医嘱组 套餐医嘱组类 实验室医嘱套餐 实验室医嘱套餐类 实验室医嘱组 实验室医嘱组合类 实验室医嘱组套 实验室医嘱组套类 实验室套餐医嘱组 实验室套餐医嘱组类 实验室检验项目医嘱组合类 实验室检验项目组合类 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 检验医嘱组合类 检验项目医嘱组合类 检验项目组合类 组 组合 组合医嘱 组合类 组套 经过扩增的 胃肠道 胃肠道（消化道）病毒性（病毒、病毒类）病原体类（病原体、致病菌、病原物、病原菌、病原生物）组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目） 脱氧核糖核酸探针

92690-7 Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component
Adenovirus 40+41 DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
AdV 40+41 DNA Stl Ql NAA+probe
Display Name
Adenovirus 40+41 DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Adenovirus 40+41, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Adenovirus 40+41 DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Adenovirus 40+41 ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Adenovirus 40 + 41 ADN:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Adénovirus 40+41 ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-CA French (Canada) Adénovirus 40+41 , ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-BE French (Belgium) Adénovirus 40+41 ADN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Adenovirus 40+41 DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Ritirato Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Adenovirus 40+41 DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
tr-TR Turkish (Turkey) Adenovirus 40+41 DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 腺病毒 40+41 型 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: AdV;AV;腙样病毒;腺样病毒 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 腺病毒（AdV、AV、腙样病毒、腺样病毒） 40+41 型;HAdV 40+41;HAdV40+41;肠道腺病毒;腺病毒 40+41

80674-5 Adenovirus 40+41 fiber protein gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of targeted nucleic acids in Adenovirus serotypes 40 and 41 fiber protein gene in stool specimens by real-time PCR-based methods. This assay does not differentiate between the two serotypes. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP207297-5   Adenovirus 40+41 fiber protein gene
The Adenovirus (AdV) fiber protein gene, whose product facilitates cellular attachment and hemagglutination, can be used to differentiate AdV species A through F in PCR-based assays. PMCID: PMC87550 A conserved region of the fiber protein gene in the enteric AdV species F (serotypes 40/41) can be used to detect and identify the virus in various clinical and environmental specimens. PMCID: PMC1151802 Source: Regenstrief LOINC

Fully-Specified Name

Component
Adenovirus 40+41 fiber protein gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
AdV 40+41 fib prot Stl Ql NAA+probe
Display Name
Adenovirus 40+41 fiber protein gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Adenovirus 40+41 Fiber protein gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.77
Change Reason
Removed species letter and parentheses in Component based on current LOINC model for naming Adenovirus serotypes.
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Adenovirus 40+41 Fiberprotein-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Gen de la proteína de la fibra del Adenovirus F(40+41):PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Gen de proteína de fibra de adenovirus 40 + 41:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Adénovirus 40+41 protéine fibreuse gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Adenovirus 40+41 fibra gene proteina:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Ritirato Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Adenovirus 40+41 fiber proteïne gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 腺病毒 40+41 型纤突蛋白基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: AdV;AV;腙样病毒;腺样病毒 PR;Prot;成分 - 化学 - 蛋白质类;蛋白;朊;蛋白质类;蛋白质类物质 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 腺病毒（AdV、AV、腙样病毒、腺样病毒） 40+41 型;HAdV 40+41;HAdV40+41;肠道腺病毒;腺病毒 40+41 腺病毒（AdV、AV、腙样病毒、腺样病毒） 40+41 型纤突蛋白（纤维蛋白、纤突）基因;腺病毒 F(40+41) 纤突蛋白基因 遗传基因;遗传因子;吉恩;生物基因

92691-5 Astrovirus RNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP14806-1   Astrovirus
A genus of small, circular RNA viruses in the family ASTROVIRIDAE. They cause gastroenteritis and are found in the stools of several vertebrates including humans. Transmission is by the fecal-oral route. There are at least eight human serotypes and the type species is Human astrovirus 1. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Astrovirus RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
HAstV RNA Stl Ql NAA+probe
Display Name
Astrovirus RNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Astrovirus, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Astrovirus RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
Synonyms: Astroviridae
es-ES Spanish (Spain) Astrovirus RNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ARN de astrovirus:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Astrovirus ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-BE French (Belgium) Astrovirus ARN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-CA French (Canada) Astrovirus , ARN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Astrovirus RNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Astrovirus RNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
ru-RU Russian (Russian Federation) Астровирус РНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Astrovirus RNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 星状病毒 RNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 星形病毒 RNA 星形病毒;AstV 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针

92692-3 Norovirus genogroup I+II RNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP204849-6   Norovirus genogroup I+II
Norovirus (NV) is a non-enveloped, single-stranded RNA virus that belongs to the Caliciviridae family. It was previously known as the 'Norwalk-like virus'. Of the six known genogroups of NV, only three are known to infect humans and include GI, GII, and GIV. Within these three genogroups 25 genotypes have been discovered, which is why people can be infected multiple times throughout their lives. Infection with NV causes inflammation of the stomach and intestines which leads to non-bloody diarrhea, vomiting, nausea, stomach pain, fever, headache, and body aches. Symptoms persist for 1-3 days, but NV can be found in stool samples of infected people for up to two weeks after symptoms subside. The virus is highly contagious and is transmitted by the fecal-oral route, by contact with infected people, and by contact with contaminated surfaces or substances. NV is the primary cause of food-related illness in the United States. The most common genotype of NV that is responsible for outbreaks since 2002 is GII.4. NV spreads quickly in closed spaces such as daycare centers, nursing homes, schools, and cruise ships. Diagnostic tests for NV include those that detect the viral RNA or a viral antigen in stool.[https://www.cdc.gov/norovirus/preventing-infection.html] Source: Regenstrief LOINC

Fully-Specified Name

Component
Norovirus genogroup I+II RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Norovirus GI+II RNA Stl Ql NAA+probe
Display Name
Norovirus genogroup I+II RNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Norovirus Genogroup I+II, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Norovirus Genotypgruppe I+II RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Genogrupos I+II de Norovirus RNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ARN del genogrupo I + II de norovirus:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Norovirus I+II ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Norovirus genogroup I+II RNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Norovirus genogroep I+II RNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 诺如病毒基因群 I+II RNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: I 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I 与 II;诺如病毒基因群 I 型与 II 型 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I;诺如病毒;诺罗病毒;诺瓦克病毒;诺如病毒 I 型;诺如病毒 1 型;诺如病毒 I 基因群 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I+II 诺瓦克病毒;诺罗病毒

79388-5 Norovirus genogroup I+II orf1-orf2 junction region [Presence] in Stool by NAA with probe detection

Term Description

This assay determines the presence of Norovirus genogroup I or II based on detection of the ORF1-ORF2 junction region. The assay does not distinguish between genogroup I and II. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Norovirus genogroup I+II orf1-orf2 junction region
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Norov GI+II orf1-orf2 jnc Stl Ql NAA+pr
Display Name
Norovirus genogroup I+II orf1-orf2 junction region NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Norovirus Genogroup I+II Orf1-orf2 Junction Region, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
4118

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Norovirus Genotypgruppe I+II orf1-orf2 junction-Region:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Norovirus genogroupos I+ II area de union orf1-orf2:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Norovirus genogrupo I + II región de unión orf1-orf2:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Norvovirus génogroupe I+II orf1-orf2 région de jonction:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) NorovirusI+II regione di giunzione orf1-orf2:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Norovirus genogroep I+II orf1-orf2 junctiegebied:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
tr-TR Turkish (Turkey) Norovirus genogrup I+II orf1-orf2 birleşme bölgesi:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 诺如病毒基因群 I+II orf1-orf2 连接区:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: I 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 区;地区;局部 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I 与 II;诺如病毒基因群 I 型与 II 型 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I;诺如病毒;诺罗病毒;诺瓦克病毒;诺如病毒 I 型;诺如病毒 1 型;诺如病毒 I 基因群 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I+II 诺如病毒（诺瓦克病毒、诺罗病毒）基因群 I+II orf1-orf2 连接（交界、接合、会合点、接合、结合）区（区域） 诺瓦克病毒;诺罗病毒

92693-1 Rotavirus A RNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP204843-9   Rotavirus A
Rotaviruses are non-enveloped, multilayered, icosahedral viruses composed of an outer layer, an inner layer, and a core. After the immature, double-layered virus is assembled in the host cell cytoplasm, they bud across the endoplasmic reticulum (ER) and acquire a temporary membrane that has on its surface the ER resident viral glycoproteins NSP4, VP4 and VP7. The virus loses its temporary membrane and the NSP4 glycoprotein as it moves toward the center of the ER cisternae. The VP4 and VP7 proteins are pushed to the outermost membrane layer and become the mature triple-layered rotavirus. The outer capsid glycoprotein VP7 is believed to be important for the attachment to and entry in the host cell. After it enters the host cell, the VP7 glycoprotein is lost. [UniProt: Q89865] When the host cell lyses, the mature virus are released. There are eight groups of rotavirus, A through H. Groups A, B, C, and H are associated with an acute gastroenteritis and are found in humans and animals. Groups D, E, F, and G are found only in animals. Rotavirus A (RVA) are the cause an acute gastroenteritis in children and animals. RVA is the most common infectious organism to cause severe gastroenteritis in children less than 3 years of age. It is estimated that 95% of children worldwide between the ages of 3 and 5 will become infected with RVA. Approximately 8000 children under 5 years of age in Latin America and the Caribbean die of acute enteritis caused by RVA. PMID: 2556635[http://www.sciencedirect.com/science/article/pii/S004268220700400X?via%3Dihub] PMID: 27462899 Source: Regenstrief LOINC

Fully-Specified Name

Component
Rotavirus A RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
RVA RNA Stl Ql NAA+probe
Display Name
Rotavirus A RNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Rotavirus A, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Rotavirus A RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Rotavirus A RNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ARN del rotavirus A:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Rotavirus A ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Rotavirus A RNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Rotavirus A RNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 轮状病毒 A 组 RNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: A 型 ROTAV;RV 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 轮状病毒（ROTAV、RV） A 组;A 组轮状病毒

79389-3 Rotavirus A nsp5 gene [Presence] in Stool by NAA with probe detection

Term Description

This assay detects the nsp5 gene that is specific for Rotavirus A, the most common type of Rotavirus that affects humans. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection. The Verigene Rotavirus test is not expected to detect Rotavirus genogroups B, D, and NADRV, or genogroup C strains with the exception of porcine strains within genogroup C.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Rotavirus A nsp5 gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
RVA nsp5 Stl Ql NAA+probe
Display Name
Rotavirus A nsp5 gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Rotavirus A Nsp5 gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.; Updated "RV A" to "RVA" in the Shortname for consistency across terms.
Order vs. Observation
Observation
Common Test Rank Get Info
4145

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Rotavirus A nsp5-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) gen nsp5 de Rotavirus A:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Gen nsp5 del rotavirus A:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Rotavirus A nsp5 gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Rotavirus A, gene nsp5:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Gene nsp5 rotavirus A Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Rotavirus A nsp5-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar Rotavirus A nsp5 gen
tr-TR Turkish (Turkey) Rotavirus A nsp5 geni:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 轮状病毒 A 组 nsp5 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: A 型 ROTAV;RV 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 轮状病毒（ROTAV、RV） A 组 nsp5 基因;A 组轮状病毒 nsp5 基因 轮状病毒（ROTAV、RV） A 组;A 组轮状病毒 遗传基因;遗传因子;吉恩;生物基因

80675-2 Rotavirus A VP6 gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of targeted nucleic acid sequences in the Rotavirus serogroup A VP6 gene in stool specimens by real-time PCR-based methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component
Rotavirus A VP6 gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
RVA VP6 Stl Ql NAA+probe
Display Name
Rotavirus A VP6 gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Rotavirus A VP6 gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.64
Change Reason
Abbreviated "Rotavirus A" to "RVA" in the Shortname for consistency across terms.
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Rotavirus A VP6-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Gen VP6 del Rotavirus A:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Gen del rotavirus A VP6:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Rotavirus A VP6 gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Rotavirus A, gene VP6:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Gene VP6 rotavirus A Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Rotavirus A VP6-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar Rotavirus A VP6 gen
zh-CN Chinese (China) 轮状病毒 A 组 VP6 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: A 型 ROTAV;RV 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 轮状病毒（ROTAV、RV） A 组 VP6 基因;A 组轮状病毒 VP6 基因 轮状病毒（ROTAV、RV） A 组;A 组轮状病毒 遗传基因;遗传因子;吉恩;生物基因

92694-9 Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component
Sapovirus genogroups I+II+IV+V RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Sapo I+II+IV+V RNA Stl Ql NAA+probe
Display Name
Sapovirus genogroups I+II+IV+V RNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Sapovirus Genogroups I+II+IV+V, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Genogrupos I+II+IV+V de Sapovirus RNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Genogrupos de sapovirus I + II + IV + V ARN:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Sapovirus I+II+IV+V ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Sapovirus genogruppi I+II+IV+V RNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Sapovirus genogroepen I+II+IV+V RNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 札如病毒基因群 I+II+IV+V RNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: I 型 Sapovirus;SV;人类杯状病毒;Human Calicivirus;HuCV;札幌样病毒;Sapporo-like Virus;SLV V 型 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 札如病毒（SV、札幌样病毒、SLV、人类杯状病毒、HuCV）基因群 I+II+IV 札如病毒（SV、札幌样病毒、SLV、人类杯状病毒、HuCV）基因群 I+II+IV+V 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针

79390-1 Gastrointestinal pathogens identified in Stool by NAA with probe detection

Term Description

This term is used to report the summary result for the enteric pathogens panel in terms of which organism was detected. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Gastrointestinal pathogens identified
Property
Prid
Time
Pt
System
Stool
Scale
Nom
Method
Probe.amp.tar

Additional Names

Short Name
GI pathogens Stl NAA+probe
Display Name
Gastrointestinal pathogens identified NAA+probe Nom (Stl)
Consumer Name Alpha Get Info
Gastrointestinal pathogens test, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.64
Change Reason
Changed "Enteric" in Component to "Gastrointestinal", the more commonly used term.; Changed Property to from "Type" to "Prid" since results could be no pathogens identified.
Order vs. Observation
Observation

Example Answer List LL3717-7

Answer Code Score Answer ID
Campylobacter LA24556-5
Salmonella LA24557-3
Shigella/EIEC LA24558-1
Vibrio cholerae and/or parahaemolyticus LA24564-9
Yersinia enterocolitica Copyright http://snomed.info/sct ID:65255000 Yersinia enterocolitica (organism) LA19324-5
Shiga toxin 1 LA16137-4
Shiga toxin 2 LA16138-2
Norovirus LA24561-5
Adenovirus LA24562-3
Rotavirus A LA18553-0

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Patógenos gastrointestinales identificado:Presencia o identidad:Punto temporal:Heces:Nom:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Patógenos gastrointestinales identificados:Presencia o identidad:Punto temporal:Heces:Nominal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Pathogènes gastroinstinaux identifiés:Identification:Ponctuel:Selle:Résultat nominal:PCR amplification de cible
it-IT Italian (Italy) Patogenie gastrointestinali , identificato:Prid:Pt:Feci:Nom:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) gastro-intestinaal pathogeen geïdentificeerd:identificator:moment:feces:nominaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
tr-TR Turkish (Turkey) Enterik patojenler tanımlanmış:MevcKimlik:Zmlı:Dışkı:Snf:Prob.amf.hdf
Synonyms: Gaita; feçes
zh-CN Chinese (China) 胃肠道病原体类 已鉴定的:存在与否或特征标识:时间点:大便:名义型:探针法.基因扩增.靶向
Synonyms: 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 分离出的;分离的;已分离的;检出的;经分离的;经过分离的;经过鉴定的;经鉴定的;鉴定的 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 胃肠道 胃肠道（胃肠、消化道）病原体类（病原体、致病微生物、致病微生物类、病原物、病原菌、病原生物、致病菌） 脱氧核糖核酸探针