100972-9
Influenza virus A and Influenza virus B and SARS coronavirus 2 RNA panel - Nose by NAA with non-probe detection
Active
100973-7 Influenza virus A RNA [Presence] in Nose by NAA with non-probe detection
Part Descriptions
LP14239-5 Influenza virus A
Influenza viruses, from the family Orthomyxoviridae, are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C are medically relevant to humans. Aquatic birds harboring avian IAV are the likely natural reservoir for all known IAV subtypes and are probably the original source of all human pandemic IAV strains. IAV maintained in wild birds have been associated with stable host switch events to novel hosts, including most often to domestic poultry but also to horses, swine, toothed whales and humans. The influenza virus life cycle begins with the binding of viral HA to host cell receptors. Endocytosis and HA-mediated fusion of the viral and cellular membranes occurs. Viral ribonucleoprotein complexes are released into the cytoplasm, travel to the nucleus, then are replicated and transcribed by the viral polymerase complex. The new viruses are formed and bud when the newly formed ribonucleicprotein complexes and structural proteins reach the plasma membrane. Further research is needed to better understand how IAVs switch hosts and the viral genetic changes that underlie human adaptation. IAV causes respiratory infections in humans ranging from asymptomatic to fatal. Pandemics are attributed to "novel" viruses which possess a viral hemagglutinin (HA) to which humans do not have immunity. PMID: 20542248 ] PMID: 25812763
Influenza viruses A and B are single-stranded RNA enveloped viruses belonging to the Orthomyxoviridae family. The symptoms of infection of Influenza A and B include fever, cough, sore throat, rhinorrhea, nasal congestion, headache, myalgia and malaise. Some patients may experience gastrointestinal symptoms including watery diarrhea, vomiting and abdominal pain. The influenza viruses spread rapidly in enclosed spaces with a documented rate of infection of 70% following a common source of exposure. Infection occurs in the respiratory epithelium in both the upper and lower respiratory tract, and the virus can be found in many specimen types, including nasal aspirates, nasal or nasopharyngeal swabs, throat swabs, sputum and tracheal aspirates. When infection rates reach epidemic proportions, hospitalization of children and elderly patients rises as does the mortality rates of elderly patients.(Manual of Clinical Microbiology, 11th edition, James H. Jorgensen; Karen C. Carroll; Guido Funke; Michael A Pfaller; Marie Louise Landry; Sandra S. Richter; David W. Warnock)
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Influenza virus A RNA
- Property
- PrThr
- Time
- Pt
- System
- Nose
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.74
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
Example Answer List LL6280-3
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Flu A positive | LA33547-3 | ||
| Flu A negative | LA33548-1 | ||
| Specimen unsatisfactory for evaluation Copyright http://snomed.info/sct ID:125154007 Specimen unsatisfactory for evaluation (finding) | LA13548-5 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 100972-9 | Influenza virus A and Influenza virus B and SARS coronavirus 2 RNA panel - Nose by NAA with non-probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32757-3 | Influenza virus |
| LG34064-2 | Influenza virus A RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Virus chřipky A RNA: |
| de-DE | German (Germany) | Influenza-Virus A RNA: |
| el-GR | Greek (Greece) | Ιός γρίπης A RNA: Synonyms: A MICRO Ord PrThr Pt RNA Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Ιός Ιός γρίπης Ιός γρίπης A Μύτη Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Virus Influenza A RNA: |
| fr-CA | French (Canada) | Virus de l'influenza A ARN: |
| fr-FR | French (France) | Influenza virus A ARN: |
| it-IT | Italian (Italy) | Influenza A, virus RNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus dell''influenza Virus dell''influenza A |
| pl-PL | Polish (Poland) | Wirus grypy A RNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy RNA wirusa grypy typu A Wirus grypy typ A |
| zh-CN | Chinese (China) | 流感病毒 A 型 RNA: Synonyms: A 型 A 型流感; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to https://www.snomed.org/get-snomed or [email protected]<mailto:[email protected]>. This may incur a fee in SNOMED International non-Member countries.
100974-5 Influenza virus B RNA [Presence] in Nose by NAA with non-probe detection
Part Descriptions
LP14240-3 Influenza virus B
Influenza virus from the family Orthomyxoviridae are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C viruses are medically relevant to humans. Influenza A and B viruses have a similar structure whereby these viruses each contain eight discrete single-stranded RNA gene segments, each encoding at least one protein. While having a close phylogenetic relationship, influenza virus types A and B manifest very differently. While IAV infects birds, humans and other mammals, influenza B only infects humans and seals. Although both viruses cause human respiratory infection seasonally in temperate climate regions and more continually in the tropics, influenza B is normally less prevalent and causes less severe disease than IAV viruses. Research is ongoing to determine the evolutionary and epidemiological factors that shape the genetic diversity of influenza B virus. PMID: 25812763 [CDC:flu/about/viruses/types]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Influenza virus B RNA
- Property
- PrThr
- Time
- Pt
- System
- Nose
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.74
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
Example Answer List LL6281-1
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Flu B positive | LA33549-9 | ||
| Flu B negative | LA33550-7 | ||
| Specimen unsatisfactory for evaluation Copyright http://snomed.info/sct ID:125154007 Specimen unsatisfactory for evaluation (finding) | LA13548-5 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 100972-9 | Influenza virus A and Influenza virus B and SARS coronavirus 2 RNA panel - Nose by NAA with non-probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32757-3 | Influenza virus |
| LG34065-9 | Influenza virus B RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Virus chřipky B RNA: |
| de-DE | German (Germany) | Influenza-Virus B RNA: |
| el-GR | Greek (Greece) | Ιός γρίπης B RNA: Synonyms: B MICRO Ord PrThr Pt RNA Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Ιός Ιός γρίπης Ιός γρίπης B Μύτη Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Virus Influenza B RNA: |
| fr-CA | French (Canada) | Virus de l'influenza B ARN: |
| fr-FR | French (France) | Influenza virus B ARN: |
| it-IT | Italian (Italy) | Influenza B, virus RNA: Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus dell''influenza Virus dell''influenza B |
| pl-PL | Polish (Poland) | Influenza wirus B RNA: Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy RNA wirusa grypy typu B Wirus grypy typu B |
| zh-CN | Chinese (China) | 流感病毒 B 型 RNA: Synonyms: B 型 B 型流感; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to https://www.snomed.org/get-snomed or [email protected]<mailto:[email protected]>. This may incur a fee in SNOMED International non-Member countries.
96986-5 SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with non-probe detection
Term Description
Qualitative of nucleic acids within the nucleoprotein (N) gene of SARS coronavirus 2 (SARS-CoV-2) in nasal specimens by nucleic acid amplification with non-probe based detection, such as melt curve analysis. Testing is performed for the diagnosis of Coronavirus Disease 2019 (COVID-19).
Part Descriptions
LP417599-0 SARS coronavirus 2 N gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov]https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- SARS coronavirus 2 N gene
- Property
- PrThr
- Time
- Pt
- System
- Nose
- Scale
- Ord
- Method
- Non-probe.amp.tar
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Both
Example Answer List LL6282-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| COVID-19 positive | LA33551-5 | ||
| COVID-19 negative | LA33552-3 | ||
| Specimen unsatisfactory for evaluation Copyright http://snomed.info/sct ID:125154007 Specimen unsatisfactory for evaluation (finding) | LA13548-5 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 100972-9 | Influenza virus A and Influenza virus B and SARS coronavirus 2 RNA panel - Nose by NAA with non-probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG51004-6 | SARS coronavirus 2 N gene| |
| LG51017-8 | SARSCoV2 detection |
| LG51019-4 | SARSCoV2 molecular detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | SARS-CoV-2 (COVID-19) gen N: |
| de-DE | German (Germany) | SARS-Coronavirus 2 N-Gen: |
| el-GR | Greek (Greece) | Γονίδιο Ν κορωνοϊού SARS 2: Synonyms: MICRO N Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο Ν κορωνοϊού SARS 2 Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2 Μύτη Χωρίς ανιχνευτή.ενίσχυση.στόχου |
| es-ES | Spanish (Spain) | Gen N de SARS-CoV-2 (COVID-19): |
| es-MX | Spanish (Mexico) | Gen del coronavirus 2 N del SARS: |
| fr-CA | French (Canada) | Gène N du coronavirus 2 du SRAS: |
| fr-FR | French (France) | Coronavirus SARS-CoV-2 gène N: |
| it-IT | Italian (Italy) | SARS coronavirus 2, gene N: Synonyms: Amplificazione target non basata su sonda Coronavirus della SARS Gene N di SARS-CoV-2 (COVID-19) Microbiologia Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| pl-PL | Polish (Poland) | Gen N SARS-CoV-2 (COVID-19): Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Koronawirus |
| zh-CN | Chinese (China) | SARS 冠状病毒 2 N 基因: Synonyms: 2019 新型冠状病毒; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to https://www.snomed.org/get-snomed or [email protected]<mailto:[email protected]>. This may incur a fee in SNOMED International non-Member countries.