101002-4
Monkeypox virus sequencing panel - Specimen by Sequencing
Active
101003-2 Monkeypox virus clade [Type] in Specimen by Sequencing
Part Descriptions
LP150045-5 Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Monkeypox virus clade
- Property
- Type
- Time
- Pt
- System
- XXX
- Scale
- Nom
- Method
- Sequencing
Additional Names
- Short Name
- MVPX clade Spec Seq
- Display Name
- Monkeypox virus clade Sequencing Nom (Specimen)
- Consumer Name Alpha Get Info
- Monkeypox virus clade, Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.74
- Last Updated
- Version 2.75
- Order vs. Observation
- Both
Example Answer List LL6290-2
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Clade I | LA33581-2 | ||
| Clade IIa | LA33582-0 | ||
| Clade IIb | LA33583-8 | ||
| Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 | ||
| Unsatisfactory | LA20552-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 101002-4 | Monkeypox virus sequencing panel - Specimen by Sequencing |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Affenpocken-Virus-Klade: |
| es-ES | Spanish (Spain) | Clado del virus de la viruela del mono: |
| fr-FR | French (France) | Monkeypox virus clade: |
| it-IT | Italian (Italy) | Monkeypox virus clade: Synonyms: Microbiologia Punto nel tempo (episodio) |
| nl-NL | Dutch (Netherlands) | 'mpox'-virus clade: Synonyms: apenpokkenvirus; |
| zh-CN | Chinese (China) | 猴痘病毒进化枝: Synonyms: mpox 不明的; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
101004-0 Monkeypox virus lineage [Type] in Specimen by Sequencing
Part Descriptions
LP150045-5 Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Monkeypox virus lineage
- Property
- Type
- Time
- Pt
- System
- XXX
- Scale
- Nom
- Method
- Sequencing
Additional Names
- Short Name
- MVPX lineage Spec Seq
- Display Name
- Monkeypox virus lineage Sequencing Nom (Specimen)
- Consumer Name Alpha Get Info
- Monkeypox virus lineage, Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.74
- Last Updated
- Version 2.75
- Order vs. Observation
- Both
Example Answer List LL6291-0
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| A | LA13487-6 | ||
| A.1 | LA33584-6 | ||
| A.1.1 | LA33585-3 | ||
| A.2 | LA33586-1 | ||
| B.1 | LA33587-9 | ||
| B.1.1 | LA33588-7 | ||
| B.1.2 | LA33589-5 | ||
| B.1.3 | LA33590-3 | ||
| B.1.4 | LA33591-1 | ||
| B.1.5 | LA33592-9 | ||
| B.1.6 | LA33593-7 | ||
| B.1.7 | LA33594-5 | ||
| B.1.8 | LA33595-2 | ||
| Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 | ||
| Unsatisfactory | LA20552-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 101002-4 | Monkeypox virus sequencing panel - Specimen by Sequencing |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Affenpocken-Virus Abstammungslinie: |
| es-ES | Spanish (Spain) | Linaje del virus de la viruela del mono: |
| fr-FR | French (France) | Monkeypox virus lignée: |
| it-IT | Italian (Italy) | Monkeypox virus, lignaggio: Synonyms: Lignaggio di virus Monkeypox Microbiologia Punto nel tempo (episodio) |
| nl-NL | Dutch (Netherlands) | 'mpox'-virus lineage: Synonyms: apenpokkenvirus; |
| zh-CN | Chinese (China) | 猴痘病毒谱系: Synonyms: mpox 不明的; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
96766-1 GISAID sequence accession number
Term Description
GISAID Accession Numbers are unique and permanent identifiers for viral sequences. The GISAID numbers begin with letters EPI followed by a series of unique numbers. GISAID currently contains open-access genomic data for influenza viruses and SARS coronavirus 2 (SARS-CoV-2). Whole-genome sequences of SARS-CoV-2 were made available on GISAID beginning in January 2020 to enable global genomic epidemiology and real-time surveillance of new COVID-19 viral strains. [https://www.gisaid.org/]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- GISAID sequence accession number
- Property
- ID
- Time
- Pt
- System
- Isolate
- Scale
- Nom
- Method
Additional Names
- Short Name
- GISAID seq accession ID
- Display Name
- GISAID sequence accession number Nom (Isol) [ID]
- Consumer Name Alpha Get Info
- GISAID sequence accession number
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.70
- Order vs. Observation
- Both
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 101002-4 | Monkeypox virus sequencing panel - Specimen by Sequencing |
| 96894-1 | SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | GISAID sequence accession-Nummer: |
| es-MX | Spanish (Mexico) | Número de acceso a la secuencia GISAID: |
| es-ES | Spanish (Spain) | Número de acceso a la secuencia GISAID: |
| fr-FR | French (France) | GISAID numéro d'incrément de séquence: |
| it-IT | Italian (Italy) | GISAID, numero di accessione alla sequenza: Synonyms: Identificatore Microbiologia Numero di accessione alla sequenza GISAID Punto nel tempo (episodio) |
| zh-CN | Chinese (China) | GISAID 登录号: Synonyms: GISAID 索取号; |
87396-8 GenBank accession number
Term Description
The unique identifier assigned to an organism-specific genetic sequence submitted to a reference database such as GenBank (https://www.ncbi.nlm.nih.gov/genbank/). GenBank identifiers are called Accession numbers, and GenBank includes sequence data for a variety of organisms, including humans, other animals, plants, and microorganisms.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- GenBank sequence accession number
- Property
- ID
- Time
- Pt
- System
- Isolate
- Scale
- Nom
- Method
Additional Names
- Short Name
- GenBank accession ID Islt
- Display Name
- GenBank sequence accession number Nom (Isol) [ID]
- Consumer Name Alpha Get Info
- GenBank sequence accession number
Basic Attributes
- Class
- MOLPATH
- Type
- Laboratory
- First Released
- Version 2.63
- Last Updated
- Version 2.70
- Change Reason
- Release 2.70: COMPONENT: Added "sequence" to the Component name to clarify that it's the unique ID of the sequence within the organism, not the unique ID of the organism.;
- Order vs. Observation
- Both
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 101002-4 | Monkeypox virus sequencing panel - Specimen by Sequencing |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | Número de acceso a GenBank: |
| es-ES | Spanish (Spain) | Número de acceso del Banco de Genes: |
| fr-FR | French (France) | Numéro d'accessibilité GenBank: |
| it-IT | Italian (Italy) | GenBank, numero di accessione alla sequenza: Synonyms: Identificatore Numero di accessione alla sequenza GenBank Patologia molecolare Punto nel tempo (episodio) |
| zh-CN | Chinese (China) | GenBank 登录号: Synonyms: GenBank 索取号; |