Version 2.77

94500-6 SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

Term Description

Qualitative detection of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection. Results may be based on multiple assays to determine the presence of the virus in a specimen.
Source: Regenstrief LOINC

Part Descriptions

LP417540-4   SARS coronavirus 2
The 2019 Novel Coronavirus (2019-nCoV) is a coronavirus first identified as the cause of a respiratory illness outbreak in Wuhan, China. Initially, the outbreak was linked to a large seafood and animal market and thought to only be spread by animal to person contact. Within a short time, a growing number of patients who had not been exposed to animal markets were diagnosed with the infection, indicating person-to-person transmission. As of January 2020, infections with 2019-nCoV had been reported internationally due to confirmed cases in travelers from Wuhan. Overall, clinical symptoms appear milder than SARS Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome (MERS) Coronavirus (MERS-CoV) infections as do the fatality rate and transmissibility. PMID: 31953166 Reported illnesses range from minor or no respiratory symptoms to severe acute respiratory illness and death.

The full genome of the 2019-nCoV was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Source: LOINC

Reference Information

Type Source Reference
Webcontent Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. Coronavirus (COVID-19) Testing

Fully-Specified Name

Component
SARS coronavirus 2 RNA
Property
PrThr
Time
Pt
System
Respiratory System Specimen
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
SARS-CoV-2 RNA Resp Ql NAA+probe
Display Name
SARS-CoV-2 (COVID-19) RNA NAA+probe Ql (Respiratory system specimen)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19), Respiratory system specimen

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.68
Last Updated
Version 2.75
Change Reason
Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;
Order vs. Observation
Both
Common Test Rank Get Info
65

Example Answer List LL2021-5

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) LA15841-2

Member of these Panels

LOINC Long Common Name
101721-9 Deprecated SARS-CoV-2 (COVID-19) in Respiratory specimen by NAA with probe detection
103202-8 Deprecated SARS-CoV-2 (COVID-19) RNA in Respiratory specimen by NAA with probe detection
95941-1 Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
95380-2 Influenza virus A and B and SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory system specimen by NAA with probe detection
95422-2 Influenza virus A and B and SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection
92143-7 Respiratory pathogens DNA and RNA panel - Respiratory system specimen by NAA with probe detection
94499-1 Respiratory viral pathogens DNA and RNA panel - Respiratory system specimen Qualitative by NAA with probe detection
96094-8 SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory system specimen by NAA with probe detection
94531-1 SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG50983-2 SARS coronavirus 2 RNA|PrThr|Sys:ANYResp
LG51017-8 SARSCoV2 detection
LG51019-4 SARSCoV2 molecular detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) SARS-Coronavirus 2 RNA:Nachweis oder Schwellenwert:Zeitpunkt:Probenmaterial vom Respirationstrakt:Ordinal:Zielfragmentamplifikation mit Sondendetektion
de-AT German (Austria) Synonyms: SCV2-RNA ql. /RT P
es-MX Spanish (Mexico) ARN del coronavirus 2 del SARS:Presencia o umbral:Punto temporal:Espécimen respiratorio:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
es-ES Spanish (Spain) Panel del SARS-CoV-2 (COVID-19) RNA:PrThr:Punto temporal:Muestra del sistema respiratorio:Ord:Sonda con amplificación dirigida
Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio
fr-CA French (Canada) coronavirus 2 du SRAS , ARN:Présence-Seuil:Temps ponctuel:Échantillon du système respiratoire:Ordinal:Sonde avec amplification de la cible
fr-FR French (France) Coronavirus SARS-CoV-2 ARN:Présence/Seuil:Ponctuel:Respiratoire:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) SARS coronavirus 2 RNA:PrThr:Pt:Campione da Sistema Respiratorio:Ord:Sonda.amp.tar
Synonyms: Campione da Apparato Respiratorio Coronavirus della SARS Microbiologia Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) SARS-CoV-2 RNA:aanwezigheid:moment:respiratoir monster:ordinaal:probe-detectie
Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19 systema respiratorium; ademhalingsstelsel
uk-UA Ukrainian (Ukraine) SARS коронавірус 2 РНК:Наявність або Поріг:МоментЧасу:Респіраторний зразок:Порядково:Зонд-детекція. цільова аміпліфікація НК
Synonyms: 2019 Novel Coronavirus; 2019-nCoV; 3 Self-Sustaining Sequence Replication; 3SR SR; Amplif; Amplification; Amplified; Corona virus; COVID19; COVID-19; DNA NUCLEIC ACID PROBE; DNA probe; ID; II; Infectious Disease; InfectiousDisease; LAT; LCR; Ligase chain reaction; Ligation-activated transcription; Microbiology; NAA+probe; NAAT; NASBA; Nucleic acid sequence based analysis; Ordinal; PCR; Point in time; Polymerase chain reaction; PR; Probe amp; Probe with ampification; Probe with target amplification; QBR; QL; Qual; Qualitative; Random; Ribonucleic acid; SARS Coronavirus 1; SARS-CoV; SARS-CoV-1; SARS-CoV-2; Screen; SDA; Severe Acute Respiratory Syndrome; Strand Displacement Amplification; TMA; Transcription mediated amplification; Viral Pneumonias; Wuhan coronavirus
zh-CN Chinese (China) SARS 冠状病毒 2 RNA:存在情况或阈值:时间点:呼吸系统标本:序数型:探针法.基因扩增.靶向
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 供检查用的材料;待检物;待试验物;样品;样本;试料;试样 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 受检物 呼吸道标本(样品、样本);呼吸系统标本(样品、样本) 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 样品 样本 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 试样

97104-4 SARS-CoV-2 (COVID-19) ORF1ab region [Units/volume] (viral load) in Upper respiratory specimen by NAA with probe detection

Term Description

Quantitative detection of nucleic acids within the Open Reading Frame 1ab (ORF1ab) region of SARS coronavirus 2 (SARS-CoV-2) in upper respiratory specimens by nucleic acid amplification with probe-based detection.
Source: Regenstrief LOINC

Reference Information

Type Source Reference
Webcontent Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. Coronavirus (COVID-19) Testing

Fully-Specified Name

Component
SARS coronavirus 2 ORF1ab region
Property
ACnc
Time
Pt
System
Respiratory system specimen.upper
Scale
Qn
Method
Probe.amp.tar

Additional Names

Short Name
SARS-CoV-2 ORF1ab U resp NAA+probe-aCnc
Display Name
SARS-CoV-2 (COVID-19) ORF1ab region NAA+probe Qn (Upper resp)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) ORF1ab region, Upper respiratory

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.77
Change Reason
Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
Order vs. Observation
Both

Member of these Panels

LOINC Long Common Name
101721-9 Deprecated SARS-CoV-2 (COVID-19) in Respiratory specimen by NAA with probe detection
103202-8 Deprecated SARS-CoV-2 (COVID-19) RNA in Respiratory specimen by NAA with probe detection
94531-1 SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG51017-8 SARSCoV2 detection
LG51019-4 SARSCoV2 molecular detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) SARS-Coronavirus 2 ORF1ab-Region:Arbiträre Konzentration:Zeitpunkt:Probenmaterial vom oberen Respirationstrakt:Quantitativ:Zielfragmentamplifikation mit Sondendetektion
es-MX Spanish (Mexico) Región ORF1ab del coronavirus 2 del SARS:ACnc:Punto temporal:Respiratorio superior:Cuantitativo:Probe.amp.tar
fr-FR French (France) Coronavirus SARS-CoV-2 région ORF1ab:Arbitraire/Volume:Ponctuel:Voies respiratoires supérieures:Numérique:PCR amplification de cible
nl-NL Dutch (Netherlands) SARS-CoV-2 ORF1ab-regio:eenheid/volume:moment:bovenste luchtwegen:kwantitatief:probe-detectie
Synonyms: bovenste ademhalingsstelsel; systema respiratorium superior probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19 systema respiratorium; ademhalingsstelsel

Example Units

Unit Source
[IU]/mL Example UCUM Units

31208-2 Specimen source identified

Observation Required in Panel

Optional

Type of Entry

Question expects user entry - requires response [Q]

Fully-Specified Name

Component
Specimen source
Property
Prid
Time
Pt
System
XXX
Scale
Nom
Method

Additional Names

Short Name
Specimen source
Display Name
Specimen source Nom (Specimen)
Consumer Name Alpha Get Info
Specimen source, Specimen

Basic Attributes

Class
SPEC
Type
Laboratory
First Released
Version 2.07
Last Updated
Version 2.73
Order vs. Observation
Observation
Common Test Rank Get Info
1

Member of these Panels

LOINC Long Common Name
88745-5 Coccidioides immitis IgG and IgM panel - Cerebral spinal fluid
101721-9 Deprecated SARS-CoV-2 (COVID-19) in Respiratory specimen by NAA with probe detection
103202-8 Deprecated SARS-CoV-2 (COVID-19) RNA in Respiratory specimen by NAA with probe detection
102116-1 ESR1 gene mutation panel - Tissue by Molecular genetics method
104074-0 Gas and Lactate panel - Arterial blood
104075-7 Gas and Lactate panel - Venous blood
102117-9 Gastrointestinal stromal tumor multigene mutation panel - Tissue by Molecular genetics method
95830-6 Hematopoietic progenitor cell product characterization panel - Blood product unit by Flow cytometry (FC)
38351-3 Herpes virus 6 DNA panel - Specimen by NAA with probe detection
43107-2 Mycoplasma sp and Ureaplasma sp panel - Specimen by Organism specific culture
80399-9 Occupational exposure information panel
95362-0 Pancreatic exocrine function panel - Body fluid
102118-7 Rhabdomyolysis and Metabolic myopathy multigene panel - Blood or Tissue by Molecular genetics method
102119-5 Skeletal muscle channelopathy multigene panel - Blood or Tissue by Molecular genetics method
74446-6 Stone analysis panel

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Probenmaterialquelle:Nachweis oder Identität:Zeitpunkt:XXX:Nominal:
es-AR Spanish (Argentina) fuente de espécimen:presencia o identidad:punto en el tiempo:XXX:Nominal:
es-MX Spanish (Mexico) Fuente de la muestra:Presencia o identidad:Punto temporal:XXX:Nominal:
es-ES Spanish (Spain) Origen de la muestra:Presencia o identidad:Punto temporal:XXX:Nom:
fr-CA French (Canada) Source de l'échantillon:Présence ou identité:Temps ponctuel:XXX:Nominal:
fr-FR French (France) Origine du prélèvement:Identification:Ponctuel:Milieux divers:Résultat nominal:
fr-BE French (Belgium) Source de l'échantillon:Présence ou identité:Temps ponctuel:XXX:Nominal:
it-IT Italian (Italy) Campione, provenienza:Prid:Pt:XXX:Nom:
Synonyms: Caratteristiche campione Presenza o Identità Provenienza del campione Punto nel tempo (episodio)
nl-NL Dutch (Netherlands) monsteroorsprong:identificator:moment:XXX:nominaal:
pl-PL Polish (Poland) Źródło próbki:wykrycie lub identyfikacja:punkt w czasie:XXX:cecha:
pt-BR Portuguese (Brazil) Fonte da amostra:Ident:Pt:XXX:Nom:
Synonyms: Identity or presence; Point in time; Random; Misc; Miscellaneous; Unspecified; Other; Nominal; Srce
ru-RU Russian (Russian Federation) Образца источник:ПрИд:ТчкВрм:XXX:Ном:
Synonyms: Номинальный;Именной Присутствие или Идентификация Точка во времени;Момент
tr-TR Turkish (Turkey) Örnek kaynağı (hasta):MevcKimlik:Zmlı:XXX:Snf:
Synonyms: Spesmen kaynağı
uk-UA Ukrainian (Ukraine) Джерело зразка:Наявність або Ідентифікація:МоментЧасу:ХХХ:Категорійно:
Synonyms: Identity or presence; Misc; Miscellaneous; Nominal; Other; Point in time; Random; Spec; Srce; To be specified in another part of the message; Unspecified
zh-CN Chinese (China) 标本来源:存在与否或特征标识:时间点:XXX:名义型:
Synonyms: 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 受检物 存在;存在与否;特征标识;身份;身份标识 时刻;随机;随意;瞬间 标本(样品、试样、样本)来源 标本;标本信息;标本类 样品 样本 源 试样

72826-1 Race OMB.1997

Term Description

This term is used for reporting race based on the Office of Management and Budget (OMB), Revisions to the Standards for the Classification of Federal Data on Race and Ethnicity (Oct. 30, 1997).
Source: Regenstrief LOINC

Reference Information

Type Source Reference
Webcontent Office of Management and Budget (OMB) Revisions to the Standards for the Classification of Federal Data on Race and Ethnicity, Office of Management and Budget, October 30, 1997. Office of Management and Budget, 1997

Fully-Specified Name

Component
Race
Property
Type
Time
Pt
System
^Patient
Scale
Nom
Method
OMB.1997

Additional Names

Short Name
Race OMB.1997

Basic Attributes

Class
CLIN
Type
Clinical
First Released
Version 2.42
Last Updated
Version 2.44
Order vs. Observation
Both

HL7® Attributes

HL7® Field ID
PID-10

Normative Answer List LL2359-9

Answer Code Score Answer ID
American Indian or Alaska Native LA6155-1
Asian LA6156-9
Black or African American LA10610-6
Native Hawaiian or Other Pacific Islander LA10611-4
White LA4457-3

Member of these Panels

LOINC Long Common Name
76464-7 American Physical Therapy Association registry panel
101721-9 Deprecated SARS-CoV-2 (COVID-19) in Respiratory specimen by NAA with probe detection
103202-8 Deprecated SARS-CoV-2 (COVID-19) RNA in Respiratory specimen by NAA with probe detection
75854-0 PCORnet common data model set - version 1.0 [PCORnet]
85057-8 PCORnet Common Data Model set - version 3.0 [PCORnet]

Language Variants Get Info

Tag Language Translation
es-MX Spanish (Mexico) Raza:Tipo:Punto temporal:^ Paciente:Nominal:OMB.1997
it-IT Italian (Italy) Razza:Tipo:Pt:^Paziente:Nom:OMB.1997
Synonyms: Clinico paziente Punto nel tempo (episodio)
zh-CN Chinese (China) 种族:类型:时间点:^患者:名义型:OMB.1997
Synonyms: Office of Management and Budget;OMB;行政管理和预算局 人种;族;民族;种 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 医疗服务对象;客户;病人;病患;病号;超系统 - 病人 型 时刻;随机;随意;瞬间

69490-1 Ethnicity OMB.1997

Term Description

This term is used for reporting the ethnicity based on classifications provided by the Office of Management and Budget (OMB), Revisions to the Standards for the Classification of Federal Data on Race and Ethnicity (Oct. 30, 1997).
Source: Regenstrief LOINC

Fully-Specified Name

Component
Ethnicity
Property
Type
Time
Pt
System
^Patient
Scale
Nom
Method
OMB.1997

Additional Names

Short Name
Ethnicity OMB.1997

Basic Attributes

Class
CLIN
Type
Clinical
First Released
Version 2.38
Last Updated
Version 2.73
Change Reason
Added method of 'OMB.1997' since the answer list is the same as OMB's ethnicity answer list (1997). OMB provides standards that promote uniformity and comparability for data on race and ethnicity throughout the U.S. Federal Government. These standards are widely adopted, including in the EHR Meaningful Use program within the U.S.
Common Test Rank Get Info
5376

HL7® Attributes

HL7® Field ID
PID-22

Normative Answer List LL2361-5

Answer Code Score Answer ID
Hispanic or Latino LA6214-6
Not Hispanic or Latino LA19555-4

Member of these Panels

LOINC Long Common Name
76464-7 American Physical Therapy Association registry panel
101721-9 Deprecated SARS-CoV-2 (COVID-19) in Respiratory specimen by NAA with probe detection
103202-8 Deprecated SARS-CoV-2 (COVID-19) RNA in Respiratory specimen by NAA with probe detection
86636-8 Family planning report - FPAR 2.0 set
80399-9 Occupational exposure information panel
79191-3 Patient demographics panel
75854-0 PCORnet common data model set - version 1.0 [PCORnet]
85057-8 PCORnet Common Data Model set - version 3.0 [PCORnet]

Language Variants Get Info

Tag Language Translation
es-MX Spanish (Mexico) Etnicidad:Tipo:Punto temporal:^ Paciente:Nominal:OMB.1997
it-IT Italian (Italy) Etnia:Tipo:Pt:^Paziente:Nom:OMB.1997
Synonyms: Clinico paziente Punto nel tempo (episodio)
zh-CN Chinese (China) 种族划分:类型:时间点:^患者:名义型:OMB.1997
Synonyms: Office of Management and Budget;OMB;行政管理和预算局 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 医疗服务对象;客户;病人;病患;病号;超系统 - 病人 型 时刻;随机;随意;瞬间 种族关系;种族性;种族