41163-7 Treponema pallidum DNA [Presence] in Specimen by NAA with probe detection

Part Descriptions

LP14042-3   Treponema pallidum
Treponema pallidum is a spirochaete bacterium. Pathogenic treponemes are classified based upon their clinical manifestations in humans: venereal syphilis, yaws, endemic syphilis and pinta. Nonpathogenic treponemes are often part of the normal flora of the genital tract, oral cavity or intestinal tract. Treponemal infections exhibit diverse clinical manifestations which are characterized by distinct clinical stages. Multiplication of the bacterium at the entry point causes the primary stage. Dissemination of treponemes to other tissues produces the second stage. After a latency period (up to 20 to 30 years), the tertiary stage develops. T. palladum subsp pallidum (venereal syphilis) is the most destructive subspecies and produces lesions in many bodily tissues including the central nervous system. Congenital syphilis may result in birth defects or fetal death. Venereal syphilis is sexually acquired except for congenital syphilis, which is transmitted to the fetus during the later stages of pregnancy. The other treponemes are acquired by close nonvenereal contact. Control of both venereal and nonvenereal disease is based upon surveillance and antibiotic treatment of contacts. [NCBI Books:NBK7716] Source: Regenstrief LOINC

Fully-Specified Name

Component

Treponema pallidum DNA

Property

PrThr

Time

Pt

System

XXX

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

T pallidum DNA Spec Ql NAA+probe

Display Name

T. pallidum DNA NAA+probe Ql (Specimen)

Consumer Name Alpha Get Info

Treponema pallidum, Specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.15

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

6029

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• Misc
• Miscellaneous
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• Other
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• Syphilis
• T pallidum
• TMA
• To be specified in another part of the message
• Transcription mediated amplification
• Treponemal
• UniversalLabOrders
• Unspecified

11483-5 Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

Part Descriptions

LP14853-3   Varicella zoster virus
Varicella zoster virus (VZV) is a double-stranded alphaherpesvirus that causes seasonal outbreaks of chickenpox and shingles in non-immunized populations. VZV is highly infectious and is transmitted by contact with the ruptured fluid filled blisters and respiratory secretions of infected individuals. Immunity post infection is usually lifelong though the latent virus inhabits the sensory nerve ganglia where it can reactivate causing shingles when immunity declines with aging.[http://jvi.asm.org/content/88/24/13936.full] In the over fifty strains of VZV that have been sequenced it has been found that a single nucleotide polymorphism occurs about every 100 bases. The patterns of polymorphisms in VZV correlate with different geographical regions of infection and is the basis for the classification of viral clades.[https://grose.lab.uiowa.edu/vzv-genomes-and-evolution] Breuer proposed the nomenclature for the VZV clades as 1-5 with the suspected clades VI and VII to be confirmed later. The geographical regions associated with the seven clades are as follows:
Clades 1 and 3-represent the dominant clades of the circulating VZV in Europe and the Americas
Clades 4 and 5-found in Africa
Clade VI found in France, Italy
Clade VII exclusively isolated in the US
Clade 2-Asia from Korea, Japan, China not found in India, Nepal and Bangladesh where clades 4 and 5 were dominant
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054591/ Source: Regenstrief LOINC

Fully-Specified Name

Component

Varicella zoster virus DNA

Property

PrThr

Time

Pt

System

XXX

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

VZV DNA Spec Ql NAA+probe

Display Name

VZV DNA NAA+probe Ql (Specimen)

Consumer Name Alpha Get Info

Varicella zoster virus (VZV; Chickenpox), Specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 1.0j-a

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

2134

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Chicken pox
• Chicken pox virus
• Chickenpox
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• Herpes zoster
• HHV-3
• Human herpesvirus 3
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• Misc
• Miscellaneous
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• Other
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Shingles
• Spec
• Strand Displacement Amplification
• TMA
• To be specified in another part of the message
• Transcription mediated amplification
• Unspecified
• VZ
• VZV
• Zoster

16131-5 Herpes simplex virus 2 DNA [Presence] in Specimen by NAA with probe detection

Part Descriptions

LP14401-1   Herpes simplex virus 2
Herpes simplex virus 1 and 2 (HSV-1 and HSV-2) are two species of the herpes virus family, Herpesviridae, which cause infections in humans. Eight members of herpes virus family infect humans and cause a variety of illnesses including cold sores, chickenpox or varicella, shingles or herpes zoster (VZV), cytomegalovirus (CMV). Some herpes viruses have been implicated in certain cancers and in the inflammation of the brain (encephalitis). All viruses in the herpes family produce life-long infections.
They are also called Human Herpes Virus 1 and 2 (HHV-1 and HHV-2) and are neurotropic and neuroinvasive viruses; they enter and hide in the human nervous system, accounting for their durability in the human body. HSV-1 is commonly associated with herpes outbreaks of the face known as cold sores or fever blisters, whereas HSV-2 is more often associated with genital herpes. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Herpes simplex virus 1

Fully-Specified Name

Component

Herpes simplex virus 2 DNA

Property

PrThr

Time

Pt

System

XXX

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HSV2 DNA Spec Ql NAA+probe

Display Name

HSV 2 DNA NAA+probe Ql (Specimen)

Consumer Name Alpha Get Info

Herpes simplex virus 2 (HSV 2), Specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 1.0l

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

1750

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• Herp splx
• Herpes simplex virus type 2
• Herpes simplex virus type II
• HSV
• HSV2
• ID
• II
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• Misc
• Miscellaneous
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• Other
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• To be specified in another part of the message
• Transcription mediated amplification
• Unspecified

16130-7 Herpes simplex virus 1 DNA [Presence] in Specimen by NAA with probe detection

Part Descriptions

LP14821-0   Herpes simplex virus 1
Herpes simplex virus 1 and 2 (HSV-1 and HSV-2) are two species of the herpes virus family, Herpesviridae, which cause infections in humans. Eight members of herpes virus family infect humans and cause a variety of illnesses including cold sores, chickenpox or varicella, shingles or herpes zoster (VZV), cytomegalovirus (CMV). Some herpes viruses have been implicated in certain cancers and in the inflammation of the brain (encephalitis). All viruses in the herpes family produce life-long infections.
They are also called Human Herpes Virus 1 and 2 (HHV-1 and HHV-2) and are neurotropic and neuroinvasive viruses; they enter and hide in the human nervous system, accounting for their durability in the human body. HSV-1 is commonly associated with herpes outbreaks of the face known as cold sores or fever blisters, whereas HSV-2 is more often associated with genital herpes. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Herpes simplex virus 1

Fully-Specified Name

Component

Herpes simplex virus 1 DNA

Property

PrThr

Time

Pt

System

XXX

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HSV1 DNA Spec Ql NAA+probe

Display Name

HSV 1 DNA NAA+probe Ql (Specimen)

Consumer Name Alpha Get Info

Herpes simplex virus 1 (HSV 1), Specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 1.0l

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

1699

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• Herp splx
• Herpes simplex virus type 1
• HSV
• HSV1
• i
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• Misc
• Miscellaneous
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• Other
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• To be specified in another part of the message
• Transcription mediated amplification
• Unspecified