106062-3
Enteric pathogen panel - Stool by NAA with probe detection
Active
92723-6 Yersinia enterocolitica DNA [Presence] in Stool by NAA with probe detection
Part Descriptions
LP17258-2 Yersinia enterocolitica
A species of the genus Yersinia, isolated from both man and animal. It is a frequent cause of bacterial gastroenteritis in children.
Source: National Library of Medicine, MeSH 2006
LP17258-2 Yersinia enterocolitica
Yersinia enterocolitica is a species of gram-negative coccobacillus-shaped bacterium, belonging to the family Enterobacteriaceae. Primarily a zoonotic disease (cattle, deer, pigs, and birds), animals which recover frequently become asymptomatic carriers of the disease.
Yersinia enterocolitica is a heterogeneous group of strains, classified into 6 biogroups, and into more than 57 O serogroups. The human pathogenic strains most frequently isolated worldwide belong to serogroups O:3, O:5,27, O:8 and O:9. The major route of Y. enterocolitica infection is through contaminated foods or causing gastrointestinal infections which are usually self-limiting. PMID: 22019131
Source: Regenstrief LOINC, PMID: 22019131
Fully-Specified Name
- Component
- Yersinia enterocolitica DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- Y enterocol DNA Stl Ql NAA+probe
- Display Name
- Y. enterocolitica DNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Yersinia enterocolitica, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.66
- Order vs. Observation
- Observation
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106061-5 | Enteric bacteria panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Yersinia enterocolitica DNA: |
| es-ES | Spanish (Spain) | Yersinia enterocolitica ADN: |
| es-MX | Spanish (Mexico) | ADN de Yersinia enterocolitica: |
| fr-FR | French (France) | Yersinia enterocolitica ADN: |
| fr-BE | French (Belgium) | Yersinia enterocolitica ADN: |
| fr-CA | French (Canada) | Yersinia enterocolitica, ADN: |
| it-IT | Italian (Italy) | Yersinia enterocolitica DNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Yersinia enterocolitica DNA: Synonyms: ontlasting; |
| ru-RU | Russian (Russian Federation) | Yersinia enterocolitica ДНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Yersinia enterocolitica DNA: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 小肠结肠炎耶尔森氏菌 DNA: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
97313-1 Salmonella sp DNA [Presence] in Stool by NAA with probe detection
Part Descriptions
LP16750-9 Salmonella sp
Salmonella are gram-negative, flagellated, facultative intracellular, anaerobic bacilli with O, H and Vi surface antigens. Once ingested, Salmonella survives the gastric acid barrier and penetrates the epithelial cells of the small and large intestines. The invasion of the epithelial cells stimulates the release of cytokines and a subsequent inflammatory response leading to diarrhea and possible ulceration of the mucosa.[NCBI Books: 8435] Antibodies to Salmonella are the body's defense when the bacteria is outside of its host cell which occurs at the initial infection and when the bacillus moves from cell to cell. There is a 10 minute window of opportunity when the Salmonella bacillus leaves the macrophage to invade another. During that time, antibodies and complement work to eradicate the bacilli, but some of the extracellular bacilli will evade attack and enter another host cell. Studies have shown that vaccines play an important role in the fight against typhoid fever. PMID: 25566248 There are two species of Salmonella: S. enterica and S. bongori. These species can be further subclassified into subspecies and serovars.
Veterinary Medicine:
Salmonella infection is most often caused by the serovars Salmonella choleraesuis, and Salmonella typhimurium and less often by Salmonella derby. Infected pigs can be asymptomatic and become carriers of S. choleraesius. Typically, the bacteria survive in the mesenteric lymph nodes that drain into the intestines, and are not shed in the feces unless the pig is under stress. The carrier state lasts for weeks to months and is self-limiting. Severe infection with S. choleraesius can be serious starting out as septicemia and progressing to pneumonia and enteritis. The infection can spread to various tissues including to the central nervous system leading to meningitis and to the joints where it manifests as arthritis. Severe infections with S. choleraesius occurs at any age, but most often in pigs 12-14 weeks of age.[http://www.thepigsite.com/pighealth/article/357/salmonellosis/]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Salmonella sp DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- Salmonella DNA Stl Ql NAA+probe
- Display Name
- Salmonella sp DNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Salmonella sp, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.70
- Order vs. Observation
- Both
Example Answer List LL2451-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Undetermined | LA14100-4 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106061-5 | Enteric bacteria panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Salmonella sp DNA: |
| es-ES | Spanish (Spain) | Salmonella sp ADN: |
| es-MX | Spanish (Mexico) | ADN de Salmonella sp: |
| fr-BE | French (Belgium) | Salmonella sp ADN: |
| fr-CA | French (Canada) | Salmonella sp, ADN: |
| fr-FR | French (France) | Salmonella ADN: |
| it-IT | Italian (Italy) | Salmonella sp DNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Salmonella sp. DNA: Synonyms: ontlasting; |
| ru-RU | Russian (Russian Federation) | Salmonella sp ДНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Salmonella sp DNA: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 沙门菌属单个未知种 DNA: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
71429-5 Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection
Part Descriptions
LP149284-4 Campylobacter sp DNA.diarrheagenic
This code is created for a PCR designed to detect campylobacter species associated with diarrhea in humans versus other Campylobacter species. The probes for this original test amplify a portion of the 16s rRNA gene (16s DNA) and theoretically detects all of the following: C. coli, C. helveticus, C. hyointestinal, C. jejuni, C. lari, C. upsaliensis, C. avium, C. Canadensis, C. cuniculorum, C. insulaenigrae, C. lanienae, C. peloridis, C. subantarcticus, and C. volucris. The PCR does not detect C. concisus, C. curvus, C. gracilis, C. hominis, C. rectus, C. showae, C. fetus, C. mucosalis, C. sputorum, and C. ureolyticus.
Source: Regenstrief LOINC
LP99310-2 Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Campylobacter sp DNA.diarrheagenic
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- Campy sp DNA.diarrhea Stl Ql NAA+probe
- Display Name
- Campylobacter sp DNA.diarrheagenic NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Campylobacter Species DNA.diarrheagenic, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.40
- Last Updated
- Version 2.73
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 3646
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106061-5 | Enteric bacteria panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Campylobacter sp DNA.durchfallerregend: |
| es-ES | Spanish (Spain) | ADN Campylobacter sp. productor de diarreas: |
| es-MX | Spanish (Mexico) | ADN de Campylobacter sp.: |
| fr-FR | French (France) | Campylobacter ADN entéropathogène: |
| it-IT | Italian (Italy) | Campylobacter sp, DNA.diarreagenico: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Campylobacter sp. DNA.diarreageen: Synonyms: ontlasting; |
| pt-BR | Portuguese (Brazil) | Campylobacter sp DNA.diarreiogênico: |
| ru-RU | Russian (Russian Federation) | Campylobacter sp ДНК.диареегенный: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Campylobacter sp DNA.diarrheajenik: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 弯曲菌属.DNA.致泻性: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
70242-3 Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection
Part Descriptions
LP145956-1 Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
The invasion plasmid antigen H (ipaH) gene is a multicopy gene exclusively found in all Shigella and enteroinvasive E. coli (EIEC). Shigella and EIEC both evolved from nonpathogenic Escherichia coli, and sequencing of multiple housekeeping genes indicates that EIEC is genetically related to Shigella. Shigella causes bacillary dysentery with symptoms including abdominal cramps, nausea, fever and a bloody and mucus diarrhea. By testing for the absence of lysine decarboxylase (LDC) activity and presence of the IpaH gene, Shigella and EIEC can be differentiated from non-enteroinvasive E. coli. PMID: 21901636
Source: Regenstrief LOINC, PMID: 21901636
Fully-Specified Name
- Component
- Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- Shigella sp+EIEC ipaH Stl Ql NAA+probe
- Display Name
- Shigella species+EIEC invasion plasmid antigen H ipaH gene NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Shigella Species+EIEC Invasion Plasmid Antigen H IpaH gene, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.40
- Last Updated
- Version 2.73
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 3524
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106061-5 | Enteric bacteria panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-AT | German (Austria) | Synonyms: Shigella spp./EIEC ql. /ST PCR |
| de-DE | German (Germany) | Shigella species+EIEC-invasion plasmid antigen H (ipaH)-Gen: |
| es-ES | Spanish (Spain) | Gen antígeno H plasmídico invasor bacterial (ipaH): |
| es-MX | Spanish (Mexico) | Especies de Shigella + gen del antígeno H (ipaH) del plásmido invasor EIEC: |
| fr-CA | French (Canada) | Shigella+Escherichia coli entéroinvasif ipaH gène: |
| fr-FR | French (France) | Shigella+Escherichia coli entéroinvasif ipaH gène: |
| it-IT | Italian (Italy) | Specie shigella e Escherichia Coli enteroinvasive antigene H plasmidico di invasione batterica (ipaH), gene: Synonyms: Gene di antigene H plasmidico di invasione batteri Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Shigella sp. + bacterieel invasieplasmide antigeen H (ipaH) gen: Synonyms: ontlasting; |
| pt-BR | Portuguese (Brazil) | Plasmídeo invasão bacteriana antígeno H (ipaH) gene: |
| ru-RU | Russian (Russian Federation) | Бактериальной инвазии плазмидный антиген H (ipaH) ген: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Bakteriyel invazyon plasmid antigen H (ipaH) geni: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 志贺菌+肠侵袭性大肠埃希菌侵袭质粒抗原 H (ipaH) 基因: Synonyms: Ag H 型 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
81285-9 Escherichia coli Stx1 and Stx2 toxin stx1 and stx2 genes [Identifier] in Stool by NAA with probe detection
Part Descriptions
LP208368-3 Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes
Shiga-like toxin is generated by some strains of Escherichia coli, known as Stx-producing E. coli (STEC). Shiga-like toxins are named for their similarity to the AB5-type shiga toxin produced by the bacteria Shigella dysenteriae. There are two primary types, known as Stx1 (also Stx1a or SLT1) and Stx2 (also Stx2a or SLT2). Variants of Stx1 and Stx2 have been identified but they are rarely found in clinical specimens and few are clinically significant. PMID: 25530917 Shiga-like toxins are associated with hemolytic-uremic syndrome (HUS) in which patients present with thrombocytopenia, hemolytic anemia, and kidney failure. PMID: 6131302
Source: Regenstrief LOINC
LP208368-3 Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes
Shiga toxin producing E. coli (STEC) is also known as enterohemorrhagic E. coli (EHEC) and verotocix E. coli (VTEC). STEC are strains capable of producing Shiga toxin and typically cause blood diarrhea. Hemolytic-uremic syndrome complicates 6-9 percent of STEC infections overall and about 15 percent of STEC infections in children under age 10. STEC strains are typically have one or both stx genes that encode for Shiga Toxins 1 and 2.
Source: LOINC partner 1
Fully-Specified Name
- Component
- Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes
- Property
- Prid
- Time
- Pt
- System
- Stool
- Scale
- Nom
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EC stx1 + stx2 genes Stl NAA+probe
- Display Name
- E. coli stx1 and stx2 genes NAA+probe Nom (Stl)
- Consumer Name Alpha Get Info
- Escherichia coli stx1 & stx2 toxin stx1 & stx2 genes, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.56
- Last Updated
- Version 2.73
- Change Reason
- Updated Component from "Escherichia coli shiga-like toxin 1 & 2 (stx1 & stx2) genes" based on the current E. coli nomenclature and LOINC model.
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 10727
Example Answer List LL1498-6
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Shiga toxin 1 | LA16137-4 | ||
| Shiga toxin 2 | LA16138-2 | ||
| Shiga toxin 1+2 | LA16139-0 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106061-5 | Enteric bacteria panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-AT | German (Austria) | Synonyms: EHEC Toxine /ST PCR |
| de-DE | German (Germany) | Escherichia coli Stx1 & Stx2-Toxine stx1 & stx2-Gene: |
| es-ES | Spanish (Spain) | Genes (stx1+stx2) de la toxina de Escherichia coli shiga 1+2: |
| es-MX | Spanish (Mexico) | Escherichia coli Stx1 y Stx2 toxina genes stx1 y stx2: |
| fr-FR | French (France) | Escherichia coli toxines stx1 et stx2 gènes: |
| it-IT | Italian (Italy) | Escherichia coli tossine shiga-like 1 & 2 (stx1 & stx2), geni: Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Escherichia coli shiga-achtig toxine1 & 2 (stx1 & stx2) genen: Synonyms: Escherichia coli shiga-like ontlasting; |
| zh-CN | Chinese (China) | 大肠埃希菌志贺样毒素 1 与 2 stx1 与 stx2 基因: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
97319-8 Escherichia coli enterotoxigenic DNA [Presence] in Stool by NAA with probe detection
Fully-Specified Name
- Component
- Escherichia coli enterotoxigenic DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- ETEC DNA Stl Ql NAA+probe
- Display Name
- E. coli enterotoxigenic DNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Escherichia coli enterotoxigenic, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.70
- Order vs. Observation
- Both
Example Answer List LL2451-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Undetermined | LA14100-4 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106061-5 | Enteric bacteria panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Escherichia coli enterotoxigen DNA: |
| es-ES | Spanish (Spain) | Escherichia coli enterotoxigénica (ETEC) ADN: |
| es-MX | Spanish (Mexico) | ADN enterotoxigénico de Escherichia coli: |
| fr-FR | French (France) | Escherichia coli entérotoxinogène ADN: |
| it-IT | Italian (Italy) | Escherichia coli enterotossigeni DNA: Synonyms: ETEC Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | enterotoxigene Escherichia coli DNA: Synonyms: E.coli; |
| zh-CN | Chinese (China) | 产肠毒素性大肠埃希菌 DNA: Synonyms: E coli; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
92686-5 Vibrio cholerae+parahaemolyticus+vulnificus DNA [Presence] in Stool by NAA with probe detection
Part Descriptions
LP212411-5 Vibrio cholerae+parahaemolyticus+vulnificus
Vibrio is a genus of Gram-negative bacteria associated with gastroenteritis. Pathogenic Vibrio species include V. cholerae (causes cholera), V. parahaemolyticus, and V. vulnificus. Pathogenic species can cause foodborne illness, usually associated with eating undercooked seafood. PMID: 16151093
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Vibrio cholerae+parahaemolyticus+vulnificus DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- V chol+para+vul DNA Stl Ql NAA+probe
- Display Name
- V. cholerae+parahaemolyticus+vulnificus DNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Vibrio cholerae+parahaemolyticus+vulnificus, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.66
- Order vs. Observation
- Both
Example Answer List LL2038-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) | LA11884-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106061-5 | Enteric bacteria panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Vibrio cholerae+parahaemolyticus+vulnificus ADN: |
| es-MX | Spanish (Mexico) | Vibrio cholerae + parahaemolyticus + ADN vulnificus: |
| fr-FR | French (France) | Vibrio cholerae+parahaemolyticus+vulnificus ADN: |
| it-IT | Italian (Italy) | Vibrio cholerae+parahaemolyticus+vulnificus DNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Vibrio cholerae + parahaemolyticus + vulnificus DNA: Synonyms: ontlasting; |
| zh-CN | Chinese (China) | 霍乱弧菌+副溶血弧菌+创伤弧菌 DNA: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
70296-9 Plesiomonas shigelloides DNA [Presence] in Stool by NAA with probe detection
Term Description
This term was created for a RT-PCR test that identifies the 23S ribosomal subunit of Plesiomonas shigelloides DNA using fluorescent probes. Results (positive/negative) are based on the cross threshold (Ct) value of the amplified DNA.
Source: Regenstrief LOINC
Part Descriptions
LP146108-8 Plesiomonas shigelloides
Plesiomonas shigelloides is a Gram-negative, rod-shaped bacterium which has been isolated from freshwater, freshwater fish, shellfish, and from many types of animals. Human exposure to P. shigelloides is likely through contaminated water which has been used for drinking, recreation, or to rinse foods that are eaten without cooking. Not all cases of ingested P. shigelloides result in illness, and the dose needed for clinical symptoms is presumed to be at least a million organisms. Symptomatic disease is usually self-limiting, and is characterized by fever, chills, abdominal pain, nausea, watery diarrhea, and vomiting. Symptoms typically begin 20-24 hours after consumption of contaminated food or water and can last from one day to one week. (http://www.fda.gov/Food/FoodborneIllnessContaminants/CausesOfIllnessBadBugBook/ucm070530.htm)
Source: Regenstrief LOINC, FDA: Plesiomonas shigelloides gastroenteritis
Fully-Specified Name
- Component
- Plesiomonas shigelloides DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- P shigelloides DNA Stl Ql NAA+probe
- Display Name
- P. shigelloides DNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Plesiomonas shigelloides, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.40
- Last Updated
- Version 2.73
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 3661
Example Answer List LL360-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106061-5 | Enteric bacteria panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Plesiomonas shigelloides DNA: |
| es-ES | Spanish (Spain) | Plesiomonas shigelloides ADN: |
| es-MX | Spanish (Mexico) | ADN de Plesiomonas shigelloides: |
| fr-FR | French (France) | Plesiomonas shigelloides ADN: |
| it-IT | Italian (Italy) | Plesiomonas shigelloides DNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Plesiomonas shigelloides DNA: Synonyms: ontlasting; |
| pt-BR | Portuguese (Brazil) | Plesiomonas shigelloides DNA: |
| ru-RU | Russian (Russian Federation) | Plesiomonas shigelloides ДНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Plesiomonas shigelloides DNA: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 类志贺毗邻单胞菌 DNA: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
88509-5 Helicobacter pylori 23S rRNA clarithromycin resistance mutation [Identifier] by Molecular method
Term Description
Detection of variants in the 23S rRNA gene of H. pylori responsible for Clarithromycin resistance. Two or more mutations (e.g. A2143G and T2182C) may be detected. Testing may be performed on a variety of specimens, including gastric tissue and stool, to assist in treatment planning for H. pylori infections. This term was created for, but not limited in use to, a PCR-based Caliper LabChip with sequencing technology.
Source: Regenstrief LOINC
Part Descriptions
LP265289-1 Helicobacter pylori 23S rRNA clarithromycin resistance mutation
Helicobacter pylori (H.pylori) are gram-negative bacterium usually found in the stomach. To treat for H.pylori infections, antibiotics such as clarithromycin/metronidazole or clarithromycin/amoxicillin are given. H.pylori is known to be resistant to clarithromycin due to decreased binding of the antibiotic to the bacterial ribosome. The insufficient binding is caused by point mutations within the 23S rRNA peptidyl transferase -encoding region. Three major variants (A2143G, A2142G and A2142C) in two adjacent position on the 23S rRNA gene are most commonly associated with clarithromycin resistance. The A2143G variant is most frequently reported, whereas variants A2142G and A2142C are less common. Various molecular assays have been developed to detect CLR resistance in H. pylori isolates in both gastric biopsy and stool specimens. PMID: 27436390
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Helicobacter pylori 23S rRNA clarithromycin resistance mutation
- Property
- Prid
- Time
- Pt
- System
- Isolate/Specimen
- Scale
- Nom
- Method
- Molgen
Additional Names
- Short Name
- H pylori 23S clarithro res mut Islt/Spm
- Display Name
- H. pylori 23S rRNA clarithromycin resistance mutation Molgen Nom (Islt/Spec)
- Consumer Name Alpha Get Info
- Helicobacter pylori 23S rRNA clarithromycin resistance mutation
Basic Attributes
- Class
- ABXBACT
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.65
- Change Reason
- Updated System from "Isolate" and Method from "Probe.amp.tar" according to the new, more sustainable model for LOINC molecular resistance terms [Approved by LOINC Laboratory Committee in June 2018].
- Order vs. Observation
- Both
Example Answer List LL4769-7
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| A2142G | LA28472-1 | ||
| A2142C | LA28471-3 | ||
| A2143G | LA28470-5 | ||
| G2142A | LA28473-9 | ||
| T2182C | LA28575-1 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Mutación 23S RNA de resistencia a claritromicina en Helicobacter pylori: |
| es-MX | Spanish (Mexico) | Mutación de resistencia a claritromicina de ARNr 23S de Helicobacter pylori: |
| fr-FR | French (France) | Helicobacter pylori ARNr 23S mutation de résistance à la clarithromycine: |
| it-IT | Italian (Italy) | Helicobacter pylori, mutazione 23S rRNA resistenza alla claritromicina: Synonyms: Genetica molecolare Isolato o Campione Presenza o Identità Punto nel tempo (episodio) Suscettibilità agli antibiotici |
| zh-CN | Chinese (China) | 幽门螺杆菌 23S rRNA 克拉霉素耐药性突变: Synonyms: 供检查用的材料; |
92689-9 Entamoeba histolytica DNA [Presence] in Stool by NAA with probe detection
Part Descriptions
LP16698-0 Entamoeba histolytica
Entamoeba histolytica is an anaerobic parasitic eukaryote protozoan, part of the genus Entamoeba. It infects predominantly humans and other primates. Diverse mammals such as dogs and cats can become infected but usually do not shed cysts (the environmental survival form of the organism) with their feces, thus do not contribute significantly to transmission. The active (trophozoite) stage exists only in the host and in fresh feces; cysts survive outside the host in water and soils and on foods, especially under moist conditions on the latter. When swallowed they cause infections by excysting (to the trophozoite stage) in the digestive tract.
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, Entamoeba histolytica (Wikipedia)
LP16698-0 Entamoeba histolytica
A species of parasitic protozoa causing ENTAMOEBIASIS and amebic dysentery (DYSENTERY, AMEBIC). Characteristics include a single nucleus containing a small central karyosome and peripheral chromatin that is finely and regularly beaded.
Source: National Library of Medicine, MeSH 2006
LP21259-4 Entamoeba
A genus of ameboid protozoa characterized by the presence of beaded chromatin on the inner surface of the nuclear membrane. Its organisms are parasitic in invertebrates and vertebrates, including humans.
Source: National Library of Medicine, MeSH 2006
Fully-Specified Name
- Component
- Entamoeba histolytica DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- E histolyt DNA Stl Ql NAA+probe
- Display Name
- E. histolytica DNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Entamoeba histolytica, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.66
- Order vs. Observation
- Both
Example Answer List LL2038-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) | LA11884-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106059-9 | Enteric parasite panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Entamoeba histolytica DNA: |
| es-ES | Spanish (Spain) | Entamoeba histolytica ADN: |
| es-MX | Spanish (Mexico) | ADN de Entamoeba histolytica: |
| fr-FR | French (France) | Entamoeba histolytica ADN: |
| fr-BE | French (Belgium) | Entamoeba histolytica ADN: |
| fr-CA | French (Canada) | Entamoeba histolytica, ADN: |
| it-IT | Italian (Italy) | Entamoeba histolytica DNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Entamoeba histolytica DNA: Synonyms: ontlasting; |
| ru-RU | Russian (Russian Federation) | Entamoeba histolytica ДНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Entamoeba histolytica DNA: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 溶组织内阿米巴 DNA: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
92688-1 Cryptosporidium parvum+hominis DNA [Presence] in Stool by NAA with probe detection
Fully-Specified Name
- Component
- Cryptosporidium parvum+hominis DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- C parvum+hominis DNA Stl Ql NAA+probe
- Display Name
- C. parvum+hominis DNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Cryptosporidium parvum+hominis, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.66
- Order vs. Observation
- Both
Example Answer List LL2038-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) | LA11884-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106059-9 | Enteric parasite panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Cryptosporidium parvum+hominis DNA: |
| es-ES | Spanish (Spain) | Cryptosporidium parvum+hominis ADN: |
| es-MX | Spanish (Mexico) | ADN de Cryptosporidium parvum + hominis: |
| fr-FR | French (France) | Cryptosporidium parvum+hominis ADN: |
| it-IT | Italian (Italy) | Cryptosporidium parvum+hominis DNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Cryptosporidium parvum + hominis DNA: Synonyms: ontlasting; |
| zh-CN | Chinese (China) | 小球隐孢子虫+人类隐孢子虫 DNA: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
92687-3 Giardia lamblia DNA [Presence] in Stool by NAA with probe detection
Part Descriptions
LP14122-3 Giardia lamblia
Giardia lamblia, or Giardia intestinalis, is a pear-shaped flagellated parasitic protozoa that attaches to the intestinal epithelium and feeds on mucous secretions. The organism is often non-pathogenic and found in completely asymptomatic individuals. Individuals with giardiasis, a colonization of the G. lamblia in the small intestines, can develop diarrhea and abdominal pain, occasionally vomiting and fever.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Giardia lamblia DNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- G lamblia DNA Stl Ql NAA+probe
- Display Name
- G. lamblia DNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Giardia lamblia, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.66
- Order vs. Observation
- Both
Example Answer List LL2038-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) | LA11884-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106059-9 | Enteric parasite panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG41616-0 | Giardia lamblia |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Giardia lamblia DNA: |
| el-GR | Greek (Greece) | Λάμβλια DNA: Synonyms: Giardia lamblia |
| es-ES | Spanish (Spain) | Giardia lamblia ADN: |
| es-MX | Spanish (Mexico) | ADN de Giardia lamblia: |
| fr-FR | French (France) | Giardia lamblia ADN: |
| fr-BE | French (Belgium) | Giardia lamblia ADN: |
| fr-CA | French (Canada) | Giardia lamblia, ADN: |
| it-IT | Italian (Italy) | Giardia lamblia DNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Giardia lamblia DNA: Synonyms: ontlasting; |
| ru-RU | Russian (Russian Federation) | Giardia lamblia ДНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Giardia lamblia DNA: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 蓝氏贾第鞭毛虫 DNA: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
74822-8 Clostridioides difficile toxin B tcdB gene [Presence] in Stool by NAA with probe detection
Term Description
Real-time polymerase chain reaction (PCR) assay for the rapid detection of the toxin B gene (tcdB) of Clostridium difficile. Fecal C. difficile toxin testing can aid the diagnosis of C. difficile-associated diarrhea in hospitalized patients.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Clostridioides difficile toxin B tcdB gene
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- C diff Tox B tcdB Stl Ql NAA+probe
- Display Name
- C. difficile toxin B tcdB gene NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Clostridioides difficile toxin B tcdB gene, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.48
- Last Updated
- Version 2.73
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.; Added "tcdB gene" to the Component since this assay detects nucleic acids within the tcdB gene of C. difficile; Updated genus name from Clostridium to Clostridioides based on current (2019) accepted nomenclature for this genus [PMID:27370902].
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 4577
Example Answer List LL2872-1
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Not detected | LA11883-8 | ||
| Present Copyright http://snomed.info/sct ID:52101004 Present (qualifier value) | LA9633-4 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 95183-0 | Clostridioides difficile toxin and BI-NAP1-027 strain DNA panel - Stool by NAA with probe detection |
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-AT | German (Austria) | Synonyms: Clostridium difficile Toxin-B-Gen /ST ql. PCR |
| es-ES | Spanish (Spain) | Gen de la toxina B Clostridium difficile (tcdB): |
| es-MX | Spanish (Mexico) | Gen tcdB de la toxina B de Clostridioides difficile: |
| fr-CA | French (Canada) | Gène B toxine clostridioides difficile tcdB: |
| fr-FR | French (France) | Clostridioides difficile toxine B tcdB gène: |
| it-IT | Italian (Italy) | Clostridium difficile tossina B, gene tcdB: Synonyms: Gene tcdB della tossina B di Clostridium difficile Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Tossina B di Clostridium difficile Tossina di Clostridium difficile |
| nl-NL | Dutch (Netherlands) | Clostridioides difficile toxine B tcdB-gen: Synonyms: Clostridium difficile Clostridium difficile toxine Clostridium difficile toxine B ontlasting; |
| pt-BR | Portuguese (Brazil) | Clostridium difficile toxina B: |
| zh-CN | Chinese (China) | 艰难梭菌毒素 B tcdB 基因: Synonyms: B 型 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
92691-5 Astrovirus RNA [Presence] in Stool by NAA with probe detection
Part Descriptions
LP14806-1 Astrovirus
A genus of small, circular RNA viruses in the family ASTROVIRIDAE. They cause gastroenteritis and are found in the stools of several vertebrates including humans. Transmission is by the fecal-oral route. There are at least eight human serotypes and the type species is Human astrovirus 1.
Source: National Library of Medicine, MeSH 2006
Fully-Specified Name
- Component
- Astrovirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HAstV RNA Stl Ql NAA+probe
- Display Name
- Astrovirus RNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Astrovirus, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.66
- Order vs. Observation
- Both
Example Answer List LL2038-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) | LA11884-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Astrovirus RNA: Synonyms: Astroviridae |
| es-ES | Spanish (Spain) | Astrovirus RNA: |
| es-MX | Spanish (Mexico) | ARN de astrovirus: |
| fr-FR | French (France) | Astrovirus ARN: |
| fr-BE | French (Belgium) | Astrovirus ARN: |
| fr-CA | French (Canada) | Astrovirus ARN: |
| it-IT | Italian (Italy) | Astrovirus RNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Astrovirus RNA: Synonyms: ontlasting; |
| ru-RU | Russian (Russian Federation) | Астровирус РНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Astrovirus RNA: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 星状病毒 RNA: Synonyms: 依次型; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
92694-9 Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection
Fully-Specified Name
- Component
- Sapovirus genogroups I+II+IV+V RNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- Sapo I+II+IV+V RNA Stl Ql NAA+probe
- Display Name
- Sapovirus genogroups I+II+IV+V RNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Sapovirus Genogroups I+II+IV+V, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.66
- Order vs. Observation
- Both
Example Answer List LL2038-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) | LA11884-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Genogrupos I+II+IV+V de Sapovirus RNA: |
| es-MX | Spanish (Mexico) | Genogrupos de sapovirus I + II + IV + V ARN: |
| fr-FR | French (France) | Sapovirus I+II+IV+V ARN: |
| it-IT | Italian (Italy) | Sapovirus genogruppi I+II+IV+V RNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Sapovirus genogroepen I+II+IV+V RNA: Synonyms: ontlasting; |
| zh-CN | Chinese (China) | 札如病毒基因群 I+II+IV+V RNA: Synonyms: I 型 Sapovirus; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
39528-5 Adenovirus DNA [Presence] in Specimen by NAA with probe detection
Part Descriptions
LP14061-3 Adenovirus
Adenoviruses, medium-sized (90-100 nm), non-enveloped icosohedral viruses with double-stranded DNA, have over 50 immunologically distinct types that cause infections in humans. Adenoviruses usually cause respiratory illness with symptoms ranging from the common cold to pneumonia, croup, and bronchitis. Adenoviruses can cause other illnesses such as gastroenteritis, conjunctivitis, cystitis, and less commonly, neurological disease. Infants and individuals with weakened immune systems are at high risk for severe complications of adenovirus infection and adenoviruses commonly cause acute respiratory illness in military recruits. Some asymptomatic people infected with adenoviruses have ongoing infections in their tonsils, adenoids, and intestines and can shed the virus for months or years. The virus can persist outside the body for long periods. Adenovirus infections can be detected using antigen detection, polymerase chain reaction assay, virus isolation, and serology. Typing is usually done by hemagglutination-inhibition and/or neutralization with type-specific antisera or by molecular methods. As of October 2014 there is no adenovirus vaccine for the general public, however an oral vaccine against types 4 and 7 was approved by the U.S. Food and Drug Administration in March 2011 for U.S. military personnel. The vaccine is recommended by the U.S. Department of Defense for military recruits entering basic training in order to prevent acute respiratory disease. Most adenovirus infections are mild and typically require only treatment of symptoms.
Source: Centers for Disease Control and Prevention, CDC: Adenovirus
Observation Required in Panel
Required
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Adenovirus DNA
- Property
- PrThr
- Time
- Pt
- System
- XXX
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HAdV DNA Spec Ql NAA+probe
- Display Name
- Adenovirus DNA NAA+probe Ql (Specimen)
- Consumer Name Alpha Get Info
- Adenovirus, Specimen
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.15
- Last Updated
- Version 2.73
- Change Reason
- The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
- Order vs. Observation
- Both
- Common Test Rank Get Info
- 778
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 50219-5 | Respiratory pathogens DNA and RNA 12a panel - Specimen by NAA with probe detection |
| 60566-7 | Respiratory pathogens DNA and RNA 12b panel - Specimen by NAA with probe detection |
| 94499-1 | Respiratory viral pathogens DNA and RNA panel - Respiratory system specimen Qualitative by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-AT | German (Austria) | Synonyms: Adenovirus-DNA /SM PCR |
| de-DE | German (Germany) | Adenovirus DNA: |
| es-ES | Spanish (Spain) | Adenovirus ADN: |
| es-MX | Spanish (Mexico) | ADN de adenovirus: |
| fr-CA | French (Canada) | Adénovirus, ADN: |
| fr-FR | French (France) | Adénovirus ADN: |
| fr-BE | French (Belgium) | Adénovirus ADN: |
| it-IT | Italian (Italy) | Adenovirus DNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| ko-KR | Korean (Korea, Republic Of) | 아데노바이러스 디옥시리보핵산: |
| nl-NL | Dutch (Netherlands) | Adenovirus DNA: Synonyms: probe.amp.tar |
| pt-BR | Portuguese (Brazil) | Adenovírus DNA: Synonyms: Deoxyribonucleic acid; |
| ru-RU | Russian (Russian Federation) | Аденовирус ДНК: Synonyms: ДНК проба; |
| tr-TR | Turkish (Turkey) | Adenovirus DNA: Synonyms: Mevcut |
| uk-UA | Ukrainian (Ukraine) | Аденовірус ДНК: Synonyms: 3 Self-Sustaining Sequence Replication; |
| zh-CN | Chinese (China) | 腺病毒 DNA: Synonyms: AdV; |
92693-1 Rotavirus A RNA [Presence] in Stool by NAA with probe detection
Part Descriptions
LP204843-9 Rotavirus A
Rotaviruses are non-enveloped, multilayered, icosahedral viruses composed of an outer layer, an inner layer, and a core. After the immature, double-layered virus is assembled in the host cell cytoplasm, they bud across the endoplasmic reticulum (ER) and acquire a temporary membrane that has on its surface the ER resident viral glycoproteins NSP4, VP4 and VP7. The virus loses its temporary membrane and the NSP4 glycoprotein as it moves toward the center of the ER cisternae. The VP4 and VP7 proteins are pushed to the outermost membrane layer and become the mature triple-layered rotavirus. The outer capsid glycoprotein VP7 is believed to be important for the attachment to and entry in the host cell. After it enters the host cell, the VP7 glycoprotein is lost. [UniProt: Q89865] When the host cell lyses, the mature virus are released. There are eight groups of rotavirus, A through H. Groups A, B, C, and H are associated with an acute gastroenteritis and are found in humans and animals. Groups D, E, F, and G are found only in animals. Rotavirus A (RVA) are the cause an acute gastroenteritis in children and animals. RVA is the most common infectious organism to cause severe gastroenteritis in children less than 3 years of age. It is estimated that 95% of children worldwide between the ages of 3 and 5 will become infected with RVA. Approximately 8000 children under 5 years of age in Latin America and the Caribbean die of acute enteritis caused by RVA. PMID: 2556635[http://www.sciencedirect.com/science/article/pii/S004268220700400X?via%3Dihub] PMID: 27462899
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Rotavirus A RNA
- Property
- PrThr
- Time
- Pt
- System
- Stool
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- RVA RNA Stl Ql NAA+probe
- Display Name
- Rotavirus A RNA NAA+probe Ql (Stl)
- Consumer Name Alpha Get Info
- Rotavirus A, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.66
- Order vs. Observation
- Both
Example Answer List LL2038-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) | LA11884-6 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
| 79381-0 | Gastrointestinal pathogens panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Rotavirus A RNA: |
| es-ES | Spanish (Spain) | Rotavirus A RNA: |
| es-MX | Spanish (Mexico) | ARN del rotavirus A: |
| fr-FR | French (France) | Rotavirus A ARN: |
| it-IT | Italian (Italy) | Rotavirus A RNA: Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Rotavirus A RNA: Synonyms: ontlasting; |
| zh-CN | Chinese (China) | 轮状病毒 A 组 RNA: Synonyms: A 型 ROTAV; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
76628-7 Norovirus genogroup I and II RNA [Identifier] in Stool by NAA with probe detection
Part Descriptions
LP189394-2 Norovirus genogroup I & II
Norovirus (NV) is a non-enveloped, single-stranded RNA virus that belongs to the Caliciviridae family. It was previously known as the 'Norwalk-like virus'. Of the six known genogroups of NV, only three are known to infect humans and include GI, GII, and GIV. Within these three genogroups 25 genotypes have been discovered, which is why people can be infected multiple times throughout their lives. Infection with NV causes inflammation of the stomach and intestines which leads to non-bloody diarrhea, vomiting, nausea, stomach pain, fever, headache, and body aches. Symptoms persist for 1-3 days, but NV can be found in stool samples of infected people for up to two weeks after symptoms subside. The virus is highly contagious and is transmitted by the fecal-oral route, by contact with infected people, and by contact with contaminated surfaces or substances. NV is the primary cause of food-related illness in the United States. The most common genotype of NV that is responsible for outbreaks since 2002 is GII.4. NV spreads quickly in closed spaces such as daycare centers, nursing homes, schools, and cruise ships. Diagnostic tests for NV include those that detect the viral RNA or a viral antigen in stool.[https://www.cdc.gov/norovirus/preventing-infection.html]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Norovirus genogroup I & II RNA
- Property
- Prid
- Time
- Pt
- System
- Stool
- Scale
- Nom
- Method
- Probe.amp.tar
Additional Names
- Short Name
- Norovirus GI + GII RNA Stl NAA+probe
- Display Name
- Norovirus genogroup I and II RNA NAA+probe Nom (Stl)
- Consumer Name Alpha Get Info
- Norovirus Genogroup I and II, Stool
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.52
- Last Updated
- Version 2.63
- Order vs. Observation
- Both
Example Answer List LL3248-3
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Target genes not detected | LA22675-5 | ||
| Norovirus genogroup I detected | LA22646-6 | ||
| Norovirus genogroup II detected | LA22647-4 | ||
| Norovirus genogroups I and II detected | LA22674-8 | ||
| Inconclusive Copyright http://snomed.info/sct ID:419984006 Inconclusive (qualifier value) | LA9663-1 | ||
| Specimen unsatisfactory for evaluation Copyright http://snomed.info/sct ID:125154007 Specimen unsatisfactory for evaluation (finding) | LA13548-5 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 106062-3 | Enteric pathogen panel - Stool by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Norovirus Genotypgruppe I & II RNA: |
| es-ES | Spanish (Spain) | Norovirus genogrupo I & II RNA: |
| es-MX | Spanish (Mexico) | ARN del genogrupo I y II de norovirus: |
| fr-FR | French (France) | Norovirus génogroupe I et II ARN: |
| it-IT | Italian (Italy) | Norovirus 1 & 2 RNA: Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Norovirus genogroep I & II RNA: Synonyms: ontlasting; |
| tr-TR | Turkish (Turkey) | Norovirus genogrup I ve II RNA: Synonyms: Gaita; |
| zh-CN | Chinese (China) | 诺如病毒基因群 I 与 II RNA: Synonyms: I 型 便; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.