Version 2.80

23667-9 Bacteria identified in Specimen

Part Descriptions

LP14082-9   Bacteria
One of the three domains of life (the others being Eukarya and Archaea), also called Eubacteria. They are unicellular prokaryotic microorganisms which generally possess rigid cell walls and multiply by cell division. They exhibit three principal forms: round or coccal, rodlike or bacillary, and spiral or spirochetal. Bacteria can be classified by their response to oxygen (aerobic, anaerobic, or facultatively anaerobic) and by how they obtain their energy (chemotrophic, i.e. via a chemical reaction or phototrophic, via a light reaction). In addition, chemotrophs obtain their energy from chemicals, lithotrophic from inorganic compounds and organotrophic from organic compounds. Bacteria are also classified by the source carbon that they utilize: heterotrophic, from organic sources or autotrophic, from carbon dioxide. They can also be classified by whether or not they stain (based on the structure of their cell walls) with crystal violet dye: gram-negative or gram-positive. Source: National Library of Medicine, MeSH 2006

Observation Required in Panel

Optional

Fully-Specified Name

Component
Bacteria
Property
Prid
Time
Pt
System
XXX
Scale
Nom
Method

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 1.0n
Last Updated
Version 2.78 (NAM)
Change Reason
Release 2.78: COMPONENT: Removed "Identified" from the component because it is implied by the Property "Prid";
Order vs. Observation
Both
Common Test Rank Get Info
4829

Member of these Panels

LOINC Long Common Name
68982-8 PFGE panel - Isolate

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Bakterien:Nachweis oder Identität:Zeitpunkt:XXX:Nominal:
de-AT German (Austria) Synonyms: Bakterien /SM
el-GR Greek (Greece) Βακτήριο:Prid:Pt:XXX:Nom:
Synonyms: Prid
es-AR Spanish (Argentina) bacterias identificadas:presencia o identidad:punto en el tiempo:XXX:Nominal:
es-MX Spanish (Mexico) Bacterias identificadas:Presencia o identidad:Punto temporal:XXX:Nominal:
es-ES Spanish (Spain) Bacteria:Presencia o identidad:Punto temporal:XXX:Nom:
fr-CA French (Canada) Bactéries:Présence ou identité:Temps ponctuel:XXX:Nominal:
fr-BE French (Belgium) Bactéries:Présence ou identité:Temps ponctuel:XXX:Nominal:
fr-FR French (France) Bactérie:Identification:Ponctuel:Milieux divers:Résultat nominal:
it-IT Italian (Italy) Batteri:Prid:Pt:XXX:Nom:
Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio)
ko-KR Korean (Korea, Republic Of) 세균 동정:존재:검사시점:XXX:명칭결과:
nl-NL Dutch (Netherlands) bacteriën:identificator:moment:XXX:nominaal:
Synonyms: bacterie
pt-BR Portuguese (Brazil) Identificação de bactérias:Ident:Pt:XXX:Nom:
Synonyms: Bact; Identity or presence; Point in time; Random; Misc; Miscellaneous; Unspecified; Other; Nominal; Isolated; Microbiology
ru-RU Russian (Russian Federation) Бактерии:ПрИд:ТчкВрм:XXX:Ном:
Synonyms: Номинальный;Именной Присутствие или Идентификация Точка во времени;Момент
tr-TR Turkish (Turkey) Bakteri:MevcKimlik:Zmlı:XXX:Snf:
zh-CN Chinese (China) 细菌:存在与否或特征标识:时间点:XXX:名义型:
Synonyms: 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 细菌类;菌

68985-1 Bacteria antigenic formula [Identifier] in Isolate

Term Description

In the case of PFGE, this is the identification as known to the submitting laboratory. Used to report serovar of isolate. For Salmonella, this would be the Kaufman White scheme. For Escherichia coli it would be the O & H antigens. For Shigella, it would be O groups.

Observation Required in Panel

Optional

Fully-Specified Name

Component
Bacteria antigenic formula
Property
ID
Time
Pt
System
Isolate
Scale
Nom
Method

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.40 (MIN)
Order vs. Observation
Observation

Example Answer List LL1977-9

Answer Code Score Answer ID
C1:gms:1 LA18291-7
E:1,v:1,7 LA18292-5

Member of these Panels

LOINC Long Common Name
68982-8 PFGE panel - Isolate

Language Variants Get Info

Tag Language Translation
el-GR Greek (Greece) Αντιγονικός τύπος βακτηρίων:Αναγνωριστικό:Pt:Απομονωμένο στέλεχος:Nom:
Synonyms: Αναγνωριστικό Αντιγονικός τύπος βακτηρίων Βακτήριο
es-MX Spanish (Mexico) Fórmula antigénica de bacterias:Identificador:Punto temporal:Aislado:Nominal:
es-ES Spanish (Spain) Fórmula antigénica bacteriana:Código identificador:Punto temporal:Aislado:Nom:
fr-FR French (France) Formule antigénique bactérienne:Identifiant:Ponctuel:Isolat:Résultat nominal:
it-IT Italian (Italy) Batteri, formula antigenica:ID:Pt:Isolato:Nom:
Synonyms: Formula antigenica di batteri Identificatore Microbiologia Punto nel tempo (episodio)
nl-NL Dutch (Netherlands) bacterie antigenic formula:identificator:moment:isolaat:nominaal:
Synonyms: bacterie
pl-PL Polish (Poland) Formuła antygenowa bakterii:identyfikator:punkt w czasie:izolat:cecha:
Synonyms: Formuła antygenowa bakterii
ru-RU Russian (Russian Federation) Бактерий антигенная формула:ID:ТчкВрм:Изолят:Ном:
Synonyms: Идентификатор Номинальный;Именной Точка во времени;Момент
tr-TR Turkish (Turkey) Bakteri antijenik formülü:Tnmlyc:Zmlı:İzolat:Snf:
zh-CN Chinese (China) 细菌抗原结构公式:标识符:时间点:分离株:名义型:
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 标识;身份标识符;身份标识 细菌抗原方案;细菌抗原结构公式;细菌抗原公式;细菌抗原结构公式（方案、公式、配方、套装、排列） 细菌类;菌

68988-5 Local PFGE pattern [Identifier] in Isolate

Term Description

PFGE pattern ID created by participating lab to be distinguished from nation PFGE pattern.

Observation Required in Panel

Optional

Fully-Specified Name

Component
Local PFGE pattern
Property
ID
Time
Pt
System
Isolate
Scale
Nom
Method

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.40 (MIN)
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
68982-8 PFGE panel - Isolate

Language Variants Get Info

Tag Language Translation
el-GR Greek (Greece) Τοπικό μοτίβο ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου:Αναγνωριστικό:Pt:Απομονωμένο στέλεχος:Nom:
Synonyms: Αναγνωριστικό Τοπικό μοτίβο ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου
es-MX Spanish (Mexico) Patrón de PFGE local:Identificador:Punto temporal:Aislado:Nominal:
es-ES Spanish (Spain) Patrón de PFGE local:Código identificador:Punto temporal:Aislado:Nom:
fr-FR French (France) Électrophorèse par champs pulsés Profil:Identifiant:Ponctuel:Isolat:Résultat nominal:
it-IT Italian (Italy) PFGE locale, profilo:ID:Pt:Isolato:Nom:
Synonyms: Identificatore Microbiologia Profilo PFGE locale Punto nel tempo (episodio)
ru-RU Russian (Russian Federation) Локальный PFGE паттерн:ID:ТчкВрм:Изолят:Ном:
Synonyms: Идентификатор Номинальный;Именной Точка во времени;Момент
tr-TR Turkish (Turkey) Yerel (Türkiye) PFGE:Tnmlyc:Zmlı:İzolat:Snf:
zh-CN Chinese (China) 本地 PFGE 模式:标识符:时间点:分离株:名义型:
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 标识;身份标识符;身份标识 脉冲场凝胶电泳;Pulsed-Field Gel Electrophoresis;PFGE;脉冲电场凝胶电泳;本地 PFGE 模式（带型、模式特征、特征模式、图谱、式样、组份、组分、成员）

69579-1 Local PFGE event description in Isolate

Term Description

Assigned by local jurisdiction to keep track of samples. May be coded or text.

Observation Required in Panel

Optional

Fully-Specified Name

Component
Local PFGE event description
Property
ID
Time
Pt
System
Isolate
Scale
Nom
Method

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.40 (MIN)
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
68982-8 PFGE panel - Isolate

Language Variants Get Info

Tag Language Translation
el-GR Greek (Greece) Περιγραφή τοπικού συμβάντος ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου:Αναγνωριστικό:Pt:Απομονωμένο στέλεχος:Nom:
Synonyms: Αναγνωριστικό Περιγραφή τοπικού συμβάντος ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου Συμβάν
es-MX Spanish (Mexico) Descripción del evento PFGE local:Identificador:Punto temporal:Aislado:Nominal:
es-ES Spanish (Spain) Descripción de eventos locales PFGE:Código identificador:Punto temporal:Aislado:Nom:
fr-FR French (France) Électrophorèse par champs pulsés (description):Identifiant:Ponctuel:Isolat:Résultat nominal:
it-IT Italian (Italy) PFGE locale, descrizione evento:ID:Pt:Isolato:Nom:
Synonyms: Descrizione evento PFGE locale Identificatore Microbiologia Punto nel tempo (episodio)
ru-RU Russian (Russian Federation) Местного ГЭПП события описания:ID:ТчкВрм:Изолят:Ном:
Synonyms: Идентификатор Местного гель-электрофореза в пульсирующем поле события описания Номинальный;Именной Точка во времени;Момент
zh-CN Chinese (China) 本地 PFGE 事件描述:标识符:时间点:分离株:名义型:
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 本地 PFGE 事件说明;脉冲场凝胶电泳;Pulsed-Field Gel Electrophoresis;PFGE;脉冲电场凝胶电泳 标识;身份标识符;身份标识 说明

69580-9 Local assigning authority [Identifier] in Isolate

Term Description

Use in PFGE report if not included in the local pattern ID or local cluster ID

Observation Required in Panel

Optional

Fully-Specified Name

Component
Local assigning authority
Property
ID
Time
Pt
System
Isolate
Scale
Nom
Method

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.40 (MIN)
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
68982-8 PFGE panel - Isolate

Language Variants Get Info

Tag Language Translation
el-GR Greek (Greece) Τοπική αναθέτουσα αρχή:Αναγνωριστικό:Pt:Απομονωμένο στέλεχος:Nom:
Synonyms: Αναγνωριστικό Τοπική αναθέτουσα αρχή
es-MX Spanish (Mexico) Autoridad de asignación local:Identificador:Punto temporal:Aislado:Nominal:
es-ES Spanish (Spain) Autoridad local asignada:Código identificador:Punto temporal:Aislado:Nom:
fr-FR French (France) Assignation autorité locale:Identifiant:Ponctuel:Isolat:Résultat nominal:
it-IT Italian (Italy) Autorità locale assegnante:ID:Pt:Isolato:Nom:
Synonyms: Identificatore Microbiologia Punto nel tempo (episodio)
ru-RU Russian (Russian Federation) Местный присваивающий орган:ID:ТчкВрм:Изолят:Ном:
Synonyms: Идентификатор Номинальный;Именной Точка во времени;Момент
tr-TR Turkish (Turkey) Yerel atama yapan otorite:Tnmlyc:Zmlı:İzolat:Snf:
zh-CN Chinese (China) 本地分配机构:标识符:时间点:分离株:名义型:
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 本地分配权限;本地分配权威机构;本地分派机构;本地指派机构 标识;身份标识符;身份标识

68983-6 National (USA) PFGE pattern [Identifier] in Isolate

Term Description

Each unique pattern in the database is represented by a 10-character code as follows: XXXYYY.0000 The first three characters in the code represent the bacterial pathogen, the next three characters denote the enzyme used for DNA restriction, and the last four characters represent thepattern designation. For example, in the pattern designation EXHA26.0026, EXH represents E. coli O157:H7, A26 represents restriction endonuclease AvrII, and 0026 is the pattern number. Because the pattern numbers are assigned sequentially to unique patterns, no evolutionary, phylogenetic,or clonal relationships should be implied from the order of pattern numbers. link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631779/pdf/11384513.pdf

Observation Required in Panel

Optional

Fully-Specified Name

Component
National (USA) PFGE pattern
Property
ID
Time
Pt
System
Isolate
Scale
Nom
Method

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.40 (MIN)
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
68982-8 PFGE panel - Isolate

Language Variants Get Info

Tag Language Translation
el-GR Greek (Greece) Εθνικό μοτίβο ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου (ΗΠΑ):Αναγνωριστικό:Pt:Απομονωμένο στέλεχος:Nom:
Synonyms: Αναγνωριστικό Εθνικό μοτίβο ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου (ΗΠΑ)
es-MX Spanish (Mexico) Patrón PFGE nacional (EE. UU.):Identificador:Punto temporal:Aislado:Nominal:
es-ES Spanish (Spain) Patrón PFGE nacional (USA):Código identificador:Punto temporal:Aislado:Nom:
it-IT Italian (Italy) Profilo nazionale (USA) PFGE:ID:Pt:Isolato:Nom:
Synonyms: Identificatore Microbiologia Profilo nazionale (USA) PFGE Punto nel tempo (episodio)
nl-NL Dutch (Netherlands) National (USA) PFGE patroon:identificator:moment:isolaat:nominaal:
ru-RU Russian (Russian Federation) Национальный (USA) PFGE паттерн:ID:ТчкВрм:Изолят:Ном:
Synonyms: Идентификатор Номинальный;Именной Точка во времени;Момент
tr-TR Turkish (Turkey) National (USA) PFGE pattern:Tnmlyc:Zmlı:İzolat:Snf:
zh-CN Chinese (China) 全国（美国） PFGE 模式:标识符:时间点:分离株:名义型:
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 标识;身份标识符;身份标识 脉冲场凝胶电泳;Pulsed-Field Gel Electrophoresis;PFGE;脉冲电场凝胶电泳;全国（美国） PFGE 模式（带型、模式特征、特征模式、图谱、式样、组份、组分、成员）;全美 PFGE 模式;USA

69581-7 National (USA) PFGE cluster code or CDC cluster [Identifier] in Isolate

Term Description

Each Cluster is given a "Cluster Code", YYMMSSTT-nC The first two characters in the code represent the Year(2), the next two the Month(2), the next two the State(2), the next three the SerotypCode(3), followed by a "-", the the Cluster# , followed by a "c" for example: 0710MIJPX-1c .

Observation Required in Panel

Optional

Fully-Specified Name

Component
National (USA) PFGE cluster code or CDC cluster
Property
ID
Time
Pt
System
Isolate
Scale
Nom
Method

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.40 (MIN)
Order vs. Observation
Order

Member of these Panels

LOINC Long Common Name
68982-8 PFGE panel - Isolate

Language Variants Get Info

Tag Language Translation
el-GR Greek (Greece) Εθνικός κώδικας συμπλέγματος ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου (ΗΠΑ) ή σύμπλεγμα CDC:Αναγνωριστικό:Pt:Απομονωμένο στέλεχος:Nom:
Synonyms: Αναγνωριστικό Εθνικός κώδικας συμπλέγματος ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου (ΗΠΑ) ή σύμπλεγμα CDC
es-MX Spanish (Mexico) Código de clúster PFGE nacional (EE. UU.) O clúster CDC:Identificador:Punto temporal:Aislado:Nominal:
es-ES Spanish (Spain) Grupo CDC o grupo de código PFGE nacional (USA):Código identificador:Punto temporal:Aislado:Nom:
it-IT Italian (Italy) Profilo nazionale (USA) PFGE, codice cluster o cluster CDC:ID:Pt:Isolato:Nom:
Synonyms: Identificatore Microbiologia Punto nel tempo (episodio)
nl-NL Dutch (Netherlands) National (USA) PFGE cluster code or CDC cluster:identificator:moment:isolaat:nominaal:
ru-RU Russian (Russian Federation) Национальный (USA) ГЭПП кластера код or ЦКЗ кластер:ID:ТчкВрм:Изолят:Ном:
Synonyms: Идентификатор Номинальный;Именной Точка во времени;Момент
tr-TR Turkish (Turkey) National (USA) PFGE cluster code or CDC cluster:Tnmlyc:Zmlı:İzolat:Snf:
zh-CN Chinese (China) 全国（美国） PFGE 簇代码或 CDC 簇:标识符:时间点:分离株:名义型:
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 标识;身份标识符;身份标识 脉冲场凝胶电泳;Pulsed-Field Gel Electrophoresis;PFGE;脉冲电场凝胶电泳;全美 PFGE 簇代码或 CDC 簇;USA

69582-5 PFGE restriction enzyme [Identifier] in Isolate

Term Description

Name of restriction enzyme used for PFGE. The example answer list is only a partial list. We hope to get the complete list of the restiction enzymes that are ues for this purpose.

Observation Required in Panel

Optional

Fully-Specified Name

Component
PFGE restriction enzyme
Property
ID
Time
Pt
System
Isolate
Scale
Nom
Method

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.40
Last Updated
Version 2.40 (MIN)
Order vs. Observation
Observation

Example Answer List LL1980-3

Answer Code Score Answer ID
Xbal LA18294-1
Bilnl LA18295-8
Spel LA18296-6
Sfil LA18297-4
Pacl LA18298-2
Notl LA18299-0

Member of these Panels

LOINC Long Common Name
68982-8 PFGE panel - Isolate

Language Variants Get Info

Tag Language Translation
el-GR Greek (Greece) Περιοριστικό ένζυμο ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου:Αναγνωριστικό:Pt:Απομονωμένο στέλεχος:Nom:
Synonyms: Αναγνωριστικό Περιοριστικό ένζυμο ηλεκτροφορητικού διαχωρισμού παλμικού πεδίου
es-MX Spanish (Mexico) Enzima de restricción PFGE:Identificador:Punto temporal:Aislado:Nominal:
es-ES Spanish (Spain) Enzima de restricción PFGE:Código identificador:Punto temporal:Aislado:Nom:
fr-FR French (France) Enzyme de restriction séparation électrophorétique en champs pulsés:Identifiant:Ponctuel:Isolat:Résultat nominal:
it-IT Italian (Italy) PFGE, enzima di restrizione:ID:Pt:Isolato:Nom:
Synonyms: Identificatore Microbiologia Punto nel tempo (episodio)
nl-NL Dutch (Netherlands) PFGE restrictie enzym:identificator:moment:isolaat:nominaal:
ru-RU Russian (Russian Federation) ГЭПП рестрикционный энзим:ID:ТчкВрм:Изолят:Ном:
Synonyms: Гель-электрофореза в пульсирующем поле рестрикционный энзим Идентификатор Номинальный;Именной Точка во времени;Момент
tr-TR Turkish (Turkey) PFGE restriktriksiyon enzimi:Tnmlyc:Zmlı:İzolat:Snf:
zh-CN Chinese (China) 脉冲场凝胶电泳限制性内切酶:标识符:时间点:分离株:名义型:
Synonyms: PFGE 法;PFGE 电泳法;脉冲场凝胶电泳法;脉冲场凝胶电泳;Pulsed-Field Gel Electrophoresis;PFGE;脉冲电场凝胶电泳;脉冲电场凝胶电泳法;脉冲场凝胶电泳限制酶 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 化学酶 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 标识;身份标识符;身份标识 酵素 酶制剂 酶类