92695-6 Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection

Term Description

This panel contains terms to report qualitative results for a variety of bacterial gastrointestinal pathogens.
Source: Regenstrief LOINC

Fully-Specified Name

Component

Gastrointestinal bacterial pathogens panel

Property

-

Time

Pt

System

Stool

Scale

-

Method

Probe.amp.tar

Additional Names

Short Name

GI bact pathogens Pnl Stl NAA+probe

Display Name

Gastrointestinal bacterial pathogens panel NAA+probe (Stl)

Consumer Name Alpha Get Info

Gastrointestinal bacterial pathogens panel, Stool

Basic Attributes

Class

PANEL.MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.70

Change Reason

Release 2.70: DefinitionDescription: Removed vendor-specific information from term description.;

Order vs. Observation

Order

Panel Type

Panel

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bact
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• GI
• GI bact pathogens Pnl
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Pan
• PANEL.MICROBIOLOGY
• Panl
• PCR
• Pnl
• Point in time
• Polymerase chain reaction
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• Random
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

80684-4 Campylobacter coli+jejuni+lari 16S rRNA [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in Campylobacter coli, C. jejuni, and C. lari 16S ribosomal RNA in stool specimens by PCR-based methods. This assay does not differentiate between the three species. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP207320-5   Campylobacter coli+jejuni+lari 16S
Campylobacter (meaning 'twisted bacteria') is a genus of bacteria that are Gram-negative, spiral, and microaerophilic. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive. Campylobacter jejuni is now recognized as one of the main causes of bacterial foodborne disease in many developed countries. At least a dozen species of Campylobacter have been implicated in human disease, with C. jejuni and C. coli the most common. C. fetus causes spontaneous abortions in cattle and sheep, and is an opportunistic pathogen in humans. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component

Campylobacter coli+jejuni+lari 16S rRNA

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

C coli+jej+lar 16S rRNA Stl Ql NAA+probe

Display Name

C. coli+jejuni+lari 16S rRNA NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Campylobacter coli+jejuni+lari 16S, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.63

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• C coli
• C coli+jej+lar 16S
• C coli+jejuni
• C coli+jejuni+lari
• Campy
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• Gen-Probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• ribosomal RNA
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

79382-8 Campylobacter coli+jejuni+lari fusA gene [Presence] in Stool by NAA with probe detection

Term Description

This test targets the fusA gene that is common to three species in the Campylobacter group -- coli, jejuni and lari -- and does not distinguish between the three species. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP200477-0   Campylobacter coli+jejuni+lari fusA gene
Campylobacter (meaning 'twisted bacteria') is a genus of bacteria that are Gram-negative, spiral, and microaerophilic. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive. Campylobacter jejuni is now recognized as one of the main causes of bacterial foodborne disease in many developed countries. At least a dozen species of Campylobacter have been implicated in human disease, with C. jejuni and C. coli the most common. C. fetus causes spontaneous abortions in cattle and sheep, and is an opportunistic pathogen in humans. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component

Campylobacter coli+jejuni+lari fusA gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

C coli+jejuni+lari fusA Stl Ql NAA+probe

Display Name

C. coli+jejuni+lari fusA gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Campylobacter coli+jejuni+lari fusA gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.54

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Observation

Common Test Rank Get Info

3797

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• C coli
• C coli+jejuni
• C coli+jejuni+lari
• C coli+jejuni+lari fusA
• Campy
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

81656-1 Campylobacter coli+jejuni tuf gene [Presence] in Stool by NAA with probe detection

Term Description

This test targets the tuf gene that is common to two species in the Campylobacter group, coli and jejuni, and does not distinguish between them. The tuf gene encodes elongation factor Tu. This term was created for, but is not limited in use to, the submitter's BD MAX Enteric Bacterial test kit, which is a diagnostic test for the direct qualitative detection of enteric bacterial pathogens.
Source: Regenstrief LOINC

Part Descriptions

LP208638-9   Campylobacter coli+jejuni tuf gene
Campylobacter bacteria are a major cause of foodborne diarrheal illness in humans and are the most common bacteria that cause gastroenteritis worldwide. In developed and developing countries, they cause more cases of diarrhea than foodborne Salmonella. Campylobacter are mainly spiral-shaped, S-shaped or curved, rod-shaped bacteria. Currently, there are 17 species and 6 subspecies assigned to the genus Campylobacter, of which the most frequently reported in human diseases are C. jejuni (subspecies jejuni) and C. coli. Copyright Copyright © 2001 World Health Organization. Source: World Health Organization (WHO), WHO: Campylobacter

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component

Campylobacter coli+jejuni tuf gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

C coli+jejuni tuf Stl Ql NAA+probe

Display Name

C. coli+jejuni tuf gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Campylobacter coli+jejuni tuf gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.63

Order vs. Observation

Observation

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• C coli
• C coli+jejuni
• C coli+jejuni tuf
• Campy
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

97312-3 Campylobacter coli+jejuni+upsaliensis DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP212408-1   Campylobacter coli+jejuni+upsaliensis
Campylobacter (meaning 'twisted bacteria') is a genus of bacteria that are Gram-negative, spiral, and microaerophilic. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive. Campylobacter jejuni is now recognized as one of the main causes of bacterial foodborne disease in many developed countries. At least a dozen species of Campylobacter have been implicated in human disease, with C. jejuni and C. coli the most common. C. fetus causes spontaneous abortions in cattle and sheep, and is an opportunistic pathogen in humans. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Wikipedia

LP99310-2   Campylobacter
Campylobacter species is a gram-negative comma or S-shaped motile bacteria. Most infections occur from eating raw or undercooked poultry or by touching a contaminated object. Other sources of Campylobacter include water, animals, and unpasteurized milk. Symptoms begin 2-5 days after being exposed and include bloody diarrhea, fever, abdominal cramps, nausea, and vomiting. Some people are asymptomatic. Campylobacter can spread to the bloodstream and cause life-threatening illness in immunocompromised patients. C jejuni is the primary species found in campylobacter infections. Campylobacter is identified in stool, body tissue, and fluid cultures.[https://www.cdc.gov/campylobacter/faq.html] Source: Regenstrief LOINC

Fully-Specified Name

Component

Campylobacter coli+jejuni+upsaliensis DNA

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

C coli+jej+upsa DNA Stl Ql NAA+probe

Display Name

C. coli+jejuni+upsaliensis DNA NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Campylobacter coli+jejuni+upsaliensis, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.70

Last Updated

Version 2.70

Order vs. Observation

Both

Example Answer List LL2451-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• C coli
• C coli+jej+upsa
• C coli+jejuni
• Campy
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80685-1 Clostridioides difficile toxin A+B tcdA+tcdB genes [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Clostridium difficile toxin A (tcdA) and B (tcdB) genes in stool specimens by real-time PCR methods. This assay does not differentiate between C. difficile toxin A and B genes. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP204848-8   Clostridioides difficile toxin A+B tcdA+tcdB genes
Clostridium difficile toxin's A and B are encoded by the tcdA and tcdB genes, respectively. PMID: 20664812 They share similar molecular characteristics with comparable sizes (308 kD for tcdA and 269 for tcdB) and 63% homology in their amino acid sequences. PMID: 9312171 TcdA and tcdB are expressed in response to environmental stresses, such as antibiotics.[ PMID 15831824] Nucleic acid sequences within these genes are targeted to confirm the presence of C. difficile toxins and diagnose the cause of diarrhea, abdominal pain, fever, nausea and other toxin-producing symptoms. Source: Regenstrief LOINC

Fully-Specified Name

Component

Clostridioides difficile toxin A+B tcdA+tcdB genes

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

C dif tox tcdA+tcdB Stl Ql NAA+probe

Display Name

C. difficile toxin A+B tcdA+tcdB genes NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Clostridioides difficile toxin A+B tcdA+tcdB genes, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Change Reason

Removed parentheses around the gene names in the Component based on the current LOINC model; Updated genus name from Clostridium to Clostridioides based on current (2019) accepted nomenclature for this genus [PMID:27370902].

Order vs. Observation

Both

Common Test Rank Get Info

10075

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• A,B
• Amplif
• Amplification
• Amplified
• Bowel movement
• C dif tox tcdA+tcdB
• C diff
• C diff Tox
• C diff Tox A
• C diff Tox A+B
• C difficile
• Clostridium difficile
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• Gastro
• Gastroenterology
• GI
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80677-8 Escherichia coli enterotoxigenic eltA+estB genes [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Escherichia coli enterotoxigenic (ETEC) heat-labile (LT) and heat-stable (ST) toxin genes, eltA and estB, in stool specimens by real-time PCR methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component

Escherichia coli enterotoxigenic eltA+estB genes

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

ETEC eltA+estB genes Stl Ql NAA+probe

Display Name

E. coli enterotoxigenic eltA+estB genes NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli enterotoxigenic eltA+estB genes, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.63

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• ETEC
• ETEC eltA+estB genes
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80676-0 Escherichia coli O157 rfbE gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of targeted nucleic acid sequences in the Escherichia coli O157 rfbE gene in stool specimens by real-time PCR-based methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP207314-8   Escherichia coli O157 rfbE gene
The rfbE gene in Escherichia coli (E coli) O157 encodes perosamine synthase and is the first O157 Shiga toxin-producing E coli (STEC) rfb locus to be cloned and sequenced. PMID: 8890241 The rfbE gene is used in PCR assays to distinguish serotype O157 from non-O157 STEC in a clinical specimens. PMID: 16480968 Although rfbE is specific for serotype O157, it does not distinguish between O157:H7 and O157:non-H7 strains. E. coli O157:H7 (enterohemorrhagic E. coli or EHEC) is a well-known food-borne pathogen. E. coli O157:non-H7 strains are not classified as EHEC and their clinical significance is less clear. Such non-H7 strains have been isolated from asymptomatic patients, patients with diarrhea, as well as food and environmental sources. PMID: 21876740 Source: Regenstrief LOINC

Fully-Specified Name

Component

Escherichia coli O157 rfbE gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

EC O157 rfbE gene Stl Ql NAA+probe

Display Name

E. coli O157 rfbE gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli O157 rfbE gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Order vs. Observation

Both

Common Test Rank Get Info

12493

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• E coli O157
• EC O157 rfbE gene
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

79386-9 Escherichia coli Stx1 toxin stx1 gene [Presence] in Stool by NAA with probe detection

Term Description

This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP262487-4   Escherichia coli Stx1 toxin stx1 gene
The Stx1 toxin A subunit is encoded by the stx1 gene [www.uniprot.org/uniprot/ ?query=stx1+escherichia+coli&sort=score] and the Stx2 toxin A subunit is encoded by the stx2 gene.[UniProt: K0JD26] Stx1a and Stx2a are produced by some serogroups of Escherichia coli (also known as Vero toxins and previously referred to as Shiga-like toxins) are two cytotoxins that cause hemorrhagic colitis (HC) and hemolytic uremic syndrome (HUS). The two toxins produce similar symptoms, but are immunologically unique. Both toxins are composed of a single copy of subunit A and five copies of subunit B. Stx1a and Stx1b induce host cell apoptosis by removing an adenine residue from the 28S rRNA of the 60S ribosome, with RNA-N-glycosidase activity provided by subunit A. The five B subunits bind to the host cell receptor present on endothelial cells. PMID: 25530917 Shigella toxin-producing Escherichia coli (STEC) has become a serious food-borne pathogen. Outbreaks of STEC have been associated with the consumption of pork products resulting in HC and HUS. STEC in swine has been demonstrated to cause edema disease. Epidemiological studies throughout the world have proven that STEC can be harbored and shed by domestic swine. PMID: 24397985 Source: Regenstrief LOINC

Fully-Specified Name

Component

Escherichia coli Stx1 toxin stx1 gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

EC stx1 gene Stl Ql NAA+probe

Display Name

E. coli stx1 gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli stx1 toxin stx1 gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.54

Last Updated

Version 2.73

Change Reason

Changed Component from "Bacterial shiga-like toxin 1 (stx1) gene" to "Escherichia coli shiga-like toxin 1 (stx1) gene" since stx1 is only produced by E.coli.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.; Updated Component from "Escherichia coli shiga-like toxin 1 (stx1) gene" based on the current E. coli nomenclature and LOINC model.

Order vs. Observation

Observation

Common Test Rank Get Info

4123

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• E.coli Shiga-like toxin gene
• EC stx1 gene
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Shiga Like Toxin I
• Shiga-Like Toxins
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

79387-7 Escherichia coli Stx2 toxin stx2 gene [Presence] in Stool by NAA with probe detection

Term Description

This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Part Descriptions

LP262477-5   Escherichia coli Stx2 toxin stx2 gene
The Stx1 toxin A subunit is encoded by the stx1 gene [www.uniprot.org/uniprot/ ?query=stx1+escherichia+coli&sort=score] and the Stx2 toxin A subunit is encoded by the stx2 gene.[UniProt: K0JD26] Stx1a and Stx2a are produced by some serogroups of Escherichia coli (also known as Vero toxins and previously referred to as Shiga-like toxins) are two cytotoxins that cause hemorrhagic colitis (HC) and hemolytic uremic syndrome (HUS). The two toxins produce similar symptoms, but are immunologically unique. Both toxins are composed of a single copy of subunit A and five copies of subunit B. Stx1a and Stx1b induce host cell apoptosis by removing an adenine residue from the 28S rRNA of the 60S ribosome, with RNA-N-glycosidase activity provided by subunit A. The five B subunits bind to the host cell receptor present on endothelial cells. PMID: 25530917 Shigella toxin-producing Escherichia coli (STEC) has become a serious food-borne pathogen. Outbreaks of STEC have been associated with the consumption of pork products resulting in HC and HUS. STEC in swine has been demonstrated to cause edema disease. Epidemiological studies throughout the world have proven that STEC can be harbored and shed by domestic swine. PMID: 24397985 Source: Regenstrief LOINC

Fully-Specified Name

Component

Escherichia coli Stx2 toxin stx2 gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

EC stx2 gene Stl Ql NAA+probe

Display Name

E. coli stx2 gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli stx2 toxin stx2 gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.54

Last Updated

Version 2.73

Change Reason

Changed Component from "Bacterial shiga-like toxin 2 (stx2) gene" to "Escherichia coli shiga-like toxin 2 (stx2) gene" since stx1 is only produced by E.coli.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.; Updated Component from "Escherichia coli shiga-like toxin 2 (stx2) gene" based on the current E. coli nomenclature and LOINC model.

Order vs. Observation

Observation

Common Test Rank Get Info

4124

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• E.coli Shiga-like toxin gene
• EC stx2 gene
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Shiga Like Toxin II
• Shiga-Like Toxins
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

80679-4 Escherichia coli Stx1 and Stx2 toxin stx1+stx2 genes [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in Escherichia coli shiga-like toxin 1 and 2 (stx1/stx2) genes in stool specimens by PCR-based methods. This assay does not differentiate between the two toxin genes. This term was created for, but not limited in use to, the xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP204844-7   Escherichia coli Stx1+Stx2 toxin stx1+stx2 genes
Shiga toxin producing E. coli (STEC) is also known as enterohemorrhagic E. coli (EHEC) and verotocix E. coli (VTEC). STEC are strains capable of producing Shiga toxin and typically cause blood diarrhea. Hemolytic-uremic syndrome complicates 6-9 percent of STEC infections overall and about 15 percent of STEC infections in children under age 10. STEC strains are typically have one or both stx genes that encode for Shiga Toxins 1 and 2. Source: LOINC partner 1

Fully-Specified Name

Component

Escherichia coli Stx1+Stx2 toxin stx1+stx2 genes

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

EC stx1+stx2 genes Stl Ql NAA+probe

Display Name

E. coli stx1+stx2 genes NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli stx1+Stx2 toxin stx1+stx2 genes, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.64

Change Reason

Updated Component from "Escherichia coli shiga-like toxin 1+2 (stx1+stx2) genes" based on the current E. coli nomenclature and LOINC model.

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• EC stx1 + stx2 genes
• EC stx1+stx2 genes
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Shiga-Like Toxins
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

81285-9 Escherichia coli Stx1 and Stx2 toxin stx1 and stx2 genes [Identifier] in Stool by NAA with probe detection

Part Descriptions

LP208368-3   Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes
Shiga-like toxin is generated by some strains of Escherichia coli, known as Stx-producing E. coli (STEC). Shiga-like toxins are named for their similarity to the AB5-type shiga toxin produced by the bacteria Shigella dysenteriae. There are two primary types, known as Stx1 (also Stx1a or SLT1) and Stx2 (also Stx2a or SLT2). Variants of Stx1 and Stx2 have been identified but they are rarely found in clinical specimens and few are clinically significant. PMID: 25530917 Shiga-like toxins are associated with hemolytic-uremic syndrome (HUS) in which patients present with thrombocytopenia, hemolytic anemia, and kidney failure. PMID: 6131302 Source: Regenstrief LOINC

LP208368-3   Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes
Shiga toxin producing E. coli (STEC) is also known as enterohemorrhagic E. coli (EHEC) and verotocix E. coli (VTEC). STEC are strains capable of producing Shiga toxin and typically cause blood diarrhea. Hemolytic-uremic syndrome complicates 6-9 percent of STEC infections overall and about 15 percent of STEC infections in children under age 10. STEC strains are typically have one or both stx genes that encode for Shiga Toxins 1 and 2. Source: LOINC partner 1

Fully-Specified Name

Component

Escherichia coli Stx1 & Stx2 toxin stx1 & stx2 genes

Property

Prid

Time

Pt

System

Stool

Scale

Nom

Method

Probe.amp.tar

Additional Names

Short Name

EC stx1 + stx2 genes Stl NAA+probe

Display Name

E. coli stx1 and stx2 genes NAA+probe Nom (Stl)

Consumer Name Alpha Get Info

Escherichia coli stx1 & stx2 toxin stx1 & stx2 genes, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Change Reason

Updated Component from "Escherichia coli shiga-like toxin 1 & 2 (stx1 & stx2) genes" based on the current E. coli nomenclature and LOINC model.

Order vs. Observation

Both

Common Test Rank Get Info

10727

Example Answer List LL1498-6

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• EC stx1 + stx2 genes
• EC stx1+stx2 genes
• Faecal
• Faeces
• Fecal
• Feces
• Gastro
• Gastroenterology
• GI
• ID
• Identity or presence
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nominal
• Nucleic acid sequence based analysis
• o002
• PCR
• Point in time
• Polymerase chain reaction
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• Random
• SDA
• Shiga-Like Toxins
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

97317-2 Escherichia coli enteroaggregative DNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component

Escherichia coli enteroaggregative DNA

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

EAEC DNA Stl Ql NAA+probe

Display Name

E. coli enteroaggregative DNA NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli enteroaggregative, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.70

Last Updated

Version 2.70

Order vs. Observation

Both

Example Answer List LL2451-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• EAEC
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

97318-0 Escherichia coli enteropathogenic DNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component

Escherichia coli enteropathogenic DNA

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

EPEC DNA Stl Ql NAA+probe

Display Name

E. coli enteropathogenic DNA NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli enteropathogenic, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.70

Last Updated

Version 2.70

Order vs. Observation

Both

Example Answer List LL2451-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• EPEC
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

97319-8 Escherichia coli enterotoxigenic DNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component

Escherichia coli enterotoxigenic DNA

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

ETEC DNA Stl Ql NAA+probe

Display Name

E. coli enterotoxigenic DNA NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli enterotoxigenic, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.70

Last Updated

Version 2.70

Order vs. Observation

Both

Example Answer List LL2451-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• ETEC
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

97320-6 Escherichia coli O157 DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP36684-6   Escherichia coli O157
Escherichia coli O157 is an enterohemorrhagic strain of the bacterium Escherichia coli and an emerging cause of foodborne illness. An estimated 73,000 cases of infection and 61 deaths occur each year in the United States alone, although it is rarer in less industrialized countries. Infection often leads to bloody diarrhea, and occasionally to kidney failure. Most illness has been associated with eating undercooked, contaminated ground beef, although it is also transmitted by person-to-person contact, produce, drinking unpasteurized milk or swimming in or drinking contaminated water. The 2006 United States E. coli outbreak was linked to a large quantity of spinach contaminated with this strain. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Escherichia coli O157 (Wikipedia)

LP36684-6   Escherichia coli O157
A verocytotoxin-producing serogroup belonging to the O subfamily of Escherichia coli which has been shown to cause severe food-borne disease. Recently, a strain from this serogroup, serotype H7 which produces Shiga-like toxins, has been linked to human disease outbreaks resulting from contamination of foods from bovine origin. This serogroup causes hemorrhagic and HEMOLYTIC-UREMIC SYNDROME and predominantly hemorrhagic diarrhea and GASTROENTERITIS in children. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component

Escherichia coli O157 DNA

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

E coli O157 DNA Stl Ql NAA+probe

Display Name

E. coli O157 DNA NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Escherichia coli O157, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.70

Last Updated

Version 2.70

Order vs. Observation

Both

Example Answer List LL2451-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• E coli
• E coli O157
• E coli O157 DNA
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• o002
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

70296-9 Plesiomonas shigelloides DNA [Presence] in Stool by NAA with probe detection

Term Description

This term was created for a RT-PCR test that identifies the 23S ribosomal subunit of Plesiomonas shigelloides DNA using fluorescent probes. Results (positive/negative) are based on the cross threshold (Ct) value of the amplified DNA.
Source: Regenstrief LOINC

Part Descriptions

LP146108-8   Plesiomonas shigelloides
Plesiomonas shigelloides is a Gram-negative, rod-shaped bacterium which has been isolated from freshwater, freshwater fish, shellfish, and from many types of animals. Human exposure to P. shigelloides is likely through contaminated water which has been used for drinking, recreation, or to rinse foods that are eaten without cooking. Not all cases of ingested P. shigelloides result in illness, and the dose needed for clinical symptoms is presumed to be at least a million organisms. Symptomatic disease is usually self-limiting, and is characterized by fever, chills, abdominal pain, nausea, watery diarrhea, and vomiting. Symptoms typically begin 20-24 hours after consumption of contaminated food or water and can last from one day to one week. (http://www.fda.gov/Food/FoodborneIllnessContaminants/CausesOfIllnessBadBugBook/ucm070530.htm) Source: Regenstrief LOINC, FDA: Plesiomonas shigelloides gastroenteritis

Fully-Specified Name

Component

Plesiomonas shigelloides DNA

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

P shigelloides DNA Stl Ql NAA+probe

Display Name

P. shigelloides DNA NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Plesiomonas shigelloides, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.40

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

3661

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• P shigelloides
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

97313-1 Salmonella sp DNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP16750-9   Salmonella sp
Salmonella are gram-negative, flagellated, facultative intracellular, anaerobic bacilli with O, H and Vi surface antigens. Once ingested, Salmonella survives the gastric acid barrier and penetrates the epithelial cells of the small and large intestines. The invasion of the epithelial cells stimulates the release of cytokines and a subsequent inflammatory response leading to diarrhea and possible ulceration of the mucosa.[NCBI Books: 8435] Antibodies to Salmonella are the body's defense when the bacteria is outside of its host cell which occurs at the initial infection and when the bacillus moves from cell to cell. There is a 10 minute window of opportunity when the Salmonella bacillus leaves the macrophage to invade another. During that time, antibodies and complement work to eradicate the bacilli, but some of the extracellular bacilli will evade attack and enter another host cell. Studies have shown that vaccines play an important role in the fight against typhoid fever. PMID: 25566248 There are two species of Salmonella: S. enterica and S. bongori. These species can be further subclassified into subspecies and serovars.

Veterinary Medicine:
Salmonella infection is most often caused by the serovars Salmonella choleraesuis, and Salmonella typhimurium and less often by Salmonella derby. Infected pigs can be asymptomatic and become carriers of S. choleraesius. Typically, the bacteria survive in the mesenteric lymph nodes that drain into the intestines, and are not shed in the feces unless the pig is under stress. The carrier state lasts for weeks to months and is self-limiting. Severe infection with S. choleraesius can be serious starting out as septicemia and progressing to pneumonia and enteritis. The infection can spread to various tissues including to the central nervous system leading to meningitis and to the joints where it manifests as arthritis. Severe infections with S. choleraesius occurs at any age, but most often in pigs 12-14 weeks of age.[http://www.thepigsite.com/pighealth/article/357/salmonellosis/] Source: Regenstrief LOINC

Fully-Specified Name

Component

Salmonella sp DNA

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

Salmonella DNA Stl Ql NAA+probe

Display Name

Salmonella sp DNA NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Salmonella sp, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.70

Last Updated

Version 2.70

Order vs. Observation

Both

Example Answer List LL2451-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Sal
• Salmonel
• Screen
• SDA
• species
• spp
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80678-6 Salmonella sp invA+fliC genes [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in Salmonella invA+fliC genes in stool specimens by real-time PCR methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component

Salmonella sp invA+fliC genes

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

Salmonella sp invA+fliC Stl Ql NAA+probe

Display Name

Salmonella sp invA+fliC genes NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Salmonella species invA+fliC genes, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.63

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Sal
• Salmonel
• Screen
• SDA
• species
• spp
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

79383-6 Salmonella sp rpoD gene [Presence] in Stool by NAA with probe detection

Term Description

This test detects the rpoD gene found in species of Salmonella. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Fully-Specified Name

Component

Salmonella sp rpoD gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

Salmonella sp rpoD Stl Ql NAA+probe

Display Name

Salmonella sp rpoD gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Salmonella species rpoD gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.54

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Observation

Common Test Rank Get Info

4117

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Sal
• Salmonel
• Screen
• SDA
• species
• spp
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

81657-9 Salmonella sp spaO gene [Presence] in Stool by NAA with probe detection

Term Description

This test targets the Salmonella sp SpaO gene. The SpaO gene is involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella sp into mammalian cells.[http://www.uniprot.org/uniprot/P40699] This term was created for, but is not limited in use to, the submitter's BD MAX Enteric Bacterial test kit, that is a diagnostic test for the direct qualitative detection of enteric bacterial pathogens.
Source: Regenstrief LOINC

Part Descriptions

LP208637-1   Salmonella sp spaO gene
Salmonella is a rod-shaped, motile bacterium, nonmotile (exceptions S. gallinarum and S. pullorum), nonsporeforming and Gram-negative. There is a widespread occurrence in animals, especially in poultry and swine. Environmental sources of the organism include water, soil, insects, factory surfaces, kitchen surfaces, animal feces, raw meats, raw poultry, and raw seafoods, to name only a few. S. typhi and the paratyphoid bacteria are normally caused septicemic and produce typhoid or typhoid-like fever in humans. Other forms of salmonellosis generally produce milder symptoms. Source: U.S. Food and Drug Administration, Bad Bug Book BBB - Salmonella spp

Fully-Specified Name

Component

Salmonella sp spaO gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

Salmonella sp spaO Stl Ql NAA+probe

Display Name

Salmonella sp spaO gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Salmonella species spaO gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.63

Order vs. Observation

Observation

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Sal
• Salmonel
• Screen
• SDA
• species
• spp
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

70242-3 Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection

Part Descriptions

LP145956-1   Shigella species+EIEC invasion plasmid antigen H (ipaH) gene
The invasion plasmid antigen H (ipaH) gene is a multicopy gene exclusively found in all Shigella and enteroinvasive E. coli (EIEC). Shigella and EIEC both evolved from nonpathogenic Escherichia coli, and sequencing of multiple housekeeping genes indicates that EIEC is genetically related to Shigella. Shigella causes bacillary dysentery with symptoms including abdominal cramps, nausea, fever and a bloody and mucus diarrhea. By testing for the absence of lysine decarboxylase (LDC) activity and presence of the IpaH gene, Shigella and EIEC can be differentiated from non-enteroinvasive E. coli. PMID: 21901636 Source: Regenstrief LOINC, PMID: 21901636

Fully-Specified Name

Component

Shigella species+EIEC invasion plasmid antigen H (ipaH) gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

Shigella sp+EIEC ipaH Stl Ql NAA+probe

Display Name

Shigella species+EIEC invasion plasmid antigen H ipaH gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Shigella Species+EIEC Invasion Plasmid Antigen H IpaH gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.40

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

3524

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Ag
• Amplif
• Amplification
• Amplified
• Bowel movement
• DNA NUCLEIC ACID PROBE
• DNA probe
• EIEC
• enteroinvasive E coli
• enteroinvasive Escherichia coli
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Shigella
• Shigella sp+EIEC ipaH
• Shigellosis
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80680-2 Vibrio cholerae toxin ctxA gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of nucleic acid sequences in the Vibrio cholerae toxin subunit A (ctxA) gene in stool specimens by PCR-based methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component

Vibrio cholerae toxin ctxA gene

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

Vibrio chol toxin ctxA Stl Ql NAA+probe

Display Name

V. cholerae toxin ctxA gene NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Vibrio cholerae toxin ctxA gene, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.64

Change Reason

Updated Component from "Vibrio cholerae toxin subunit A (ctxA)" based on the current LOINC model.

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Bowel movement
• CT
• CTx
• DNA NUCLEIC ACID PROBE
• DNA probe
• Faecal
• Faeces
• Fecal
• Feces
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Stl
• Stool = Fecal
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• V cholera
• V cholerae
• V cholerae Tox
• Vibrio chol toxin ctxA

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

79384-4 Vibrio cholerae+parahaemolyticus rfbL+trkH+tnaA genes [Presence] in Stool by NAA with probe detection

Term Description

This assay includes three separate nucleic acid targets for Vibrio cholerae and parahaemolyticus: the rfbL gene, the trkH gene, and tnaA gene. If any one of the markers are found the result is considered to be positive for Vibrio. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Fully-Specified Name

Component

Vibrio cholerae+parahaemolyticus rfbL+trkH+tnaA genes

Property

PrThr

Time

Pt

System

Stool

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

V chol+para rfbL+trkH+tnaA Stl Ql NAA+pr

Display Name

V. cholerae+parahaemolyticus rfbL+trkH+tnaA genes NAA+probe Ql (Stl)

Consumer Name Alpha Get Info

Vibrio cholerae+parahaemolyticus rfbL+trkH+tnaA genes, Stool

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.54

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Observation

Common Test Rank Get Info

4121

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info