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Term Description

Qualitative detection of targeted nucleic acid sequences in the Escherichia coli O157 rfbE gene in stool specimens by real-time PCR-based methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).

Part Description

LP207314-8   Escherichia coli O157 rfbE gene
The rfbE gene in Escherichia coli (E coli) O157 encodes perosamine synthase and is the first O157 Shiga toxin-producing E coli (STEC) rfb locus to be cloned and sequenced. PMID: 8890241 The rfbE gene is used in PCR assays to distinguish serotype O157 from non-O157 STEC in a clinical specimens. PMID: 16480968 Although rfbE is specific for serotype O157, it does not distinguish between O157:H7 and O157:non-H7 strains. E. coli O157:H7 (enterohemorrhagic E. coli or EHEC) is a well-known food-borne pathogen. E. coli O157:non-H7 strains are not classified as EHEC and their clinical significance is less clear. Such non-H7 strains have been isolated from asymptomatic patients, patients with diarrhea, as well as food and environmental sources. PMID: 21876740 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Escherichia coli O157 rfbE gene:PrThr:Pt:Stool:Ord:Probe.amp.tar
Long Common Name
Escherichia coli O157 rfbE gene [Presence] in Stool by NAA with probe detection
Short Name
EC O157 rfbE gene Stl Ql NAA+probe
Display Name
E. coli O157 rfbE gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Escherichia coli O157 rfbE gene, Stool

Part Model Get Info

  • Component
    Escherichia coli O157 rfbE gene
    LP207314-8
    • Analyte
      Escherichia coli O157 rfbE gene
      LP207314-8
      • Component Numerator
        Escherichia coli O157 rfbE gene
        LP207314-8
        • Component Numerator Core
          Escherichia coli O157 rfbE gene
          LP207314-8
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    Stool
    LP7604-4
    • System Core
      Stool
      LP7604-4
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Probe.amp.tar
    LP6464-4

Example Answer List: LL360-9

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
PositiveCopyright http://snomed.info/sct ID:10828004 Positive (qualifier value)LA6576-8
NegativeCopyright http://snomed.info/sct ID:260385009 Negative (qualifier value)LA6577-6

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.73 (MIN)
Order vs. Observation
Both
Common Test Rank Get Info
12493

Member of these Panels

LOINCLong Common Name
79381-0Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Escherichia coli O157 gen rfbE:Přítomnost nebo práh:Časový bod:Stolice:Ordinální:Amplifikace nukleových kyselin s detekcí sondou
de-DEGerman (Germany)Escherichia coli O157 rfbE-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
el-GRGreek (Greece)Γονίδιο O157 rfbE του Escherichia coli (Κολοβακτηρίδιο):PrThr:Pt:Κόπρανα:Ord:Ανιχνευτής.ενίσχυση.στόχου
Synonyms: Escherichia coli (Κολοβακτηρίδιο) Escherichia coli O157 (Κολοβακτηρίδιο) MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο O157 rfbE του Escherichia coli (Κολοβακτηρίδιο) Κόπρανα
es-ESSpanish (Spain)Gen rfbE Escherichia coli O157:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MXSpanish (Mexico)Gen rfbE de Escherichia coli O157:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FRFrench (France)Escherichia coli O157 gène rfbE:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-ITItalian (Italy)Escherichia coli geni O157 rfbE:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NLDutch (Netherlands)Escherichia coli O157 rfbE-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: escherichia coli O157 rfbE gen ontlasting; feces probe.amp.tar
pl-PLPolish (Poland)Escherichia coli O157 rfbE gen:granica wykrywalności:punkt w czasie:kał:uporządkowany:sonda.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Escherichia coli serotyp O157;E.coli serotyp O157 Gen rfbE Escherichia coli O157;Gen rfbE serotypu O157 Escherichia coli
zh-CNChinese (China)大肠埃希菌 O157 rfbE 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: E coli;大肠埃希氏杆菌;大肠埃希氏菌;大肠杆菌 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） O157 大肠埃希菌（E coli、大肠埃希氏杆菌、大肠埃希氏菌、大肠杆菌） O157 rfbE 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=80676-0