Version 2.77

92690-7 Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component
Adenovirus 40+41 DNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
AdV 40+41 DNA Stl Ql NAA+probe
Display Name
Adenovirus 40+41 DNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Adenovirus 40+41, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Adenovirus 40+41 DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Adenovirus 40+41 ADN:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Adenovirus 40 + 41 ADN:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-BE French (Belgium) Adénovirus 40+41 ADN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-FR French (France) Adénovirus 40+41 ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-CA French (Canada) Adénovirus 40+41 , ADN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Adenovirus 40+41 DNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Ritirato Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Adenovirus 40+41 DNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
tr-TR Turkish (Turkey) Adenovirus 40+41 DNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 腺病毒 40+41 型 DNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: AdV;AV;腙样病毒;腺样病毒 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸(Deoxyribonucleic acid,DNA) 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 腺病毒(AdV、AV、腙样病毒、腺样病毒) 40+41 型;HAdV 40+41;HAdV40+41;肠道腺病毒;腺病毒 40+41

80674-5 Adenovirus 40+41 fiber protein gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of targeted nucleic acids in Adenovirus serotypes 40 and 41 fiber protein gene in stool specimens by real-time PCR-based methods. This assay does not differentiate between the two serotypes. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Part Descriptions

LP207297-5   Adenovirus 40+41 fiber protein gene
The Adenovirus (AdV) fiber protein gene, whose product facilitates cellular attachment and hemagglutination, can be used to differentiate AdV species A through F in PCR-based assays. PMCID: PMC87550 A conserved region of the fiber protein gene in the enteric AdV species F (serotypes 40/41) can be used to detect and identify the virus in various clinical and environmental specimens. PMCID: PMC1151802 Source: Regenstrief LOINC

Fully-Specified Name

Component
Adenovirus 40+41 fiber protein gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
AdV 40+41 fib prot Stl Ql NAA+probe
Display Name
Adenovirus 40+41 fiber protein gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Adenovirus 40+41 Fiber protein gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.77
Change Reason
Removed species letter and parentheses in Component based on current LOINC model for naming Adenovirus serotypes.
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Adenovirus 40+41 Fiberprotein-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-MX Spanish (Mexico) Gen de proteína de fibra de adenovirus 40 + 41:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
es-ES Spanish (Spain) Gen de la proteína de la fibra del Adenovirus F(40+41):PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
fr-FR French (France) Adénovirus 40+41 protéine fibreuse gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Adenovirus 40+41 fibra gene proteina:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Ritirato Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Adenovirus 40+41 fiber proteïne gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 腺病毒 40+41 型纤突蛋白基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: AdV;AV;腙样病毒;腺样病毒 PR;Prot;成分 - 化学 - 蛋白质类;蛋白;朊;蛋白质类;蛋白质类物质 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 腺病毒(AdV、AV、腙样病毒、腺样病毒) 40+41 型;HAdV 40+41;HAdV40+41;肠道腺病毒;腺病毒 40+41 腺病毒(AdV、AV、腙样病毒、腺样病毒) 40+41 型纤突蛋白(纤维蛋白、纤突)基因;腺病毒 F(40+41) 纤突蛋白基因 遗传基因;遗传因子;吉恩;生物基因

92691-5 Astrovirus RNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP14806-1   Astrovirus
A genus of small, circular RNA viruses in the family ASTROVIRIDAE. They cause gastroenteritis and are found in the stools of several vertebrates including humans. Transmission is by the fecal-oral route. There are at least eight human serotypes and the type species is Human astrovirus 1. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component
Astrovirus RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
HAstV RNA Stl Ql NAA+probe
Display Name
Astrovirus RNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Astrovirus, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Astrovirus RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
Synonyms: Astroviridae
es-ES Spanish (Spain) Astrovirus RNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ARN de astrovirus:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-BE French (Belgium) Astrovirus ARN:PrThr:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
fr-FR French (France) Astrovirus ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
fr-CA French (Canada) Astrovirus , ARN:Présence-Seuil:Temps ponctuel:Selles:Ordinal:Sonde avec amplification de la cible
it-IT Italian (Italy) Astrovirus RNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Astrovirus RNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
ru-RU Russian (Russian Federation) Астровирус РНК:PrThr:ТчкВрм:Фекалии:Пор:Проба.усил.миш
Synonyms: ДНК проба;ДНК зонд Порядковый Проба с мишени усилением Точка во времени;Момент
tr-TR Turkish (Turkey) Astrovirus RNA:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 星状病毒 RNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 星形病毒 RNA 星形病毒;AstV 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针

92692-3 Norovirus genogroup I+II RNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP204849-6   Norovirus genogroup I+II
Norovirus (NV) is a non-enveloped, single-stranded RNA virus that belongs to the Caliciviridae family. It was previously known as the 'Norwalk-like virus'. Of the six known genogroups of NV, only three are known to infect humans and include GI, GII, and GIV. Within these three genogroups 25 genotypes have been discovered, which is why people can be infected multiple times throughout their lives. Infection with NV causes inflammation of the stomach and intestines which leads to non-bloody diarrhea, vomiting, nausea, stomach pain, fever, headache, and body aches. Symptoms persist for 1-3 days, but NV can be found in stool samples of infected people for up to two weeks after symptoms subside. The virus is highly contagious and is transmitted by the fecal-oral route, by contact with infected people, and by contact with contaminated surfaces or substances. NV is the primary cause of food-related illness in the United States. The most common genotype of NV that is responsible for outbreaks since 2002 is GII.4. NV spreads quickly in closed spaces such as daycare centers, nursing homes, schools, and cruise ships. Diagnostic tests for NV include those that detect the viral RNA or a viral antigen in stool.[https://www.cdc.gov/norovirus/preventing-infection.html] Source: Regenstrief LOINC

Fully-Specified Name

Component
Norovirus genogroup I+II RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Norovirus GI+II RNA Stl Ql NAA+probe
Display Name
Norovirus genogroup I+II RNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Norovirus Genogroup I+II, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Norovirus Genotypgruppe I+II RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Genogrupos I+II de Norovirus RNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ARN del genogrupo I + II de norovirus:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Norovirus I+II ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Norovirus genogroup I+II RNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Norovirus genogroep I+II RNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 诺如病毒基因群 I+II RNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: I 型 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 诺如病毒(诺瓦克病毒、诺罗病毒)基因群 I 与 II;诺如病毒基因群 I 型与 II 型 诺如病毒(诺瓦克病毒、诺罗病毒)基因群 I;诺如病毒;诺罗病毒;诺瓦克病毒;诺如病毒 I 型;诺如病毒 1 型;诺如病毒 I 基因群 诺如病毒(诺瓦克病毒、诺罗病毒)基因群 I+II 诺瓦克病毒;诺罗病毒

79388-5 Norovirus genogroup I+II orf1-orf2 junction region [Presence] in Stool by NAA with probe detection

Term Description

This assay determines the presence of Norovirus genogroup I or II based on detection of the ORF1-ORF2 junction region. The assay does not distinguish between genogroup I and II. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Norovirus genogroup I+II orf1-orf2 junction region
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Norov GI+II orf1-orf2 jnc Stl Ql NAA+pr
Display Name
Norovirus genogroup I+II orf1-orf2 junction region NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Norovirus Genogroup I+II Orf1-orf2 Junction Region, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation
Common Test Rank Get Info
4118

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Norovirus Genotypgruppe I+II orf1-orf2 junction-Region:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-MX Spanish (Mexico) Norovirus genogrupo I + II región de unión orf1-orf2:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
es-ES Spanish (Spain) Norovirus genogroupos I+ II area de union orf1-orf2:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
fr-FR French (France) Norvovirus génogroupe I+II orf1-orf2 région de jonction:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) NorovirusI+II regione di giunzione orf1-orf2:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Norovirus genogroep I+II orf1-orf2 junctiegebied:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
tr-TR Turkish (Turkey) Norovirus genogrup I+II orf1-orf2 birleşme bölgesi:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 诺如病毒基因群 I+II orf1-orf2 连接区:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: I 型 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 区;地区;局部 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 诺如病毒(诺瓦克病毒、诺罗病毒)基因群 I 与 II;诺如病毒基因群 I 型与 II 型 诺如病毒(诺瓦克病毒、诺罗病毒)基因群 I;诺如病毒;诺罗病毒;诺瓦克病毒;诺如病毒 I 型;诺如病毒 1 型;诺如病毒 I 基因群 诺如病毒(诺瓦克病毒、诺罗病毒)基因群 I+II 诺如病毒(诺瓦克病毒、诺罗病毒)基因群 I+II orf1-orf2 连接(交界、接合、会合点、接合、结合)区(区域) 诺瓦克病毒;诺罗病毒

92693-1 Rotavirus A RNA [Presence] in Stool by NAA with probe detection

Part Descriptions

LP204843-9   Rotavirus A
Rotaviruses are non-enveloped, multilayered, icosahedral viruses composed of an outer layer, an inner layer, and a core. After the immature, double-layered virus is assembled in the host cell cytoplasm, they bud across the endoplasmic reticulum (ER) and acquire a temporary membrane that has on its surface the ER resident viral glycoproteins NSP4, VP4 and VP7. The virus loses its temporary membrane and the NSP4 glycoprotein as it moves toward the center of the ER cisternae. The VP4 and VP7 proteins are pushed to the outermost membrane layer and become the mature triple-layered rotavirus. The outer capsid glycoprotein VP7 is believed to be important for the attachment to and entry in the host cell. After it enters the host cell, the VP7 glycoprotein is lost. [UniProt: Q89865] When the host cell lyses, the mature virus are released. There are eight groups of rotavirus, A through H. Groups A, B, C, and H are associated with an acute gastroenteritis and are found in humans and animals. Groups D, E, F, and G are found only in animals. Rotavirus A (RVA) are the cause an acute gastroenteritis in children and animals. RVA is the most common infectious organism to cause severe gastroenteritis in children less than 3 years of age. It is estimated that 95% of children worldwide between the ages of 3 and 5 will become infected with RVA. Approximately 8000 children under 5 years of age in Latin America and the Caribbean die of acute enteritis caused by RVA. PMID: 2556635[http://www.sciencedirect.com/science/article/pii/S004268220700400X?via%3Dihub] PMID: 27462899 Source: Regenstrief LOINC

Fully-Specified Name

Component
Rotavirus A RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
RVA RNA Stl Ql NAA+probe
Display Name
Rotavirus A RNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Rotavirus A, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Rotavirus A RNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-ES Spanish (Spain) Rotavirus A RNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) ARN del rotavirus A:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Rotavirus A ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Rotavirus A RNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Rotavirus A RNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 轮状病毒 A 组 RNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: A 型 ROTAV;RV 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 轮状病毒(ROTAV、RV) A 组;A 组轮状病毒

79389-3 Rotavirus A nsp5 gene [Presence] in Stool by NAA with probe detection

Term Description

This assay detects the nsp5 gene that is specific for Rotavirus A, the most common type of Rotavirus that affects humans. This term was created for, but is not limited in use to, Nanosphere's Verigene Enteric Pathogens Nucleic Acid Test, which is intended for the detection and identification of common pathogenic enteric bacteria, viruses, and genetic virulence markers in stool specimens from individuals with signs and symptoms of gastrointestinal infection. The Verigene Rotavirus test is not expected to detect Rotavirus genogroups B, D, and NADRV, or genogroup C strains with the exception of porcine strains within genogroup C.
Source: Regenstrief LOINC

Fully-Specified Name

Component
Rotavirus A nsp5 gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
RVA nsp5 Stl Ql NAA+probe
Display Name
Rotavirus A nsp5 gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Rotavirus A Nsp5 gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.73
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.; Updated "RV A" to "RVA" in the Shortname for consistency across terms.
Order vs. Observation
Observation
Common Test Rank Get Info
4145

Example Answer List LL744-4

Answer Code Score Answer ID
Detected LA11882-0
Not detected LA11883-8

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Rotavirus A nsp5-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-MX Spanish (Mexico) Gen nsp5 del rotavirus A:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
es-ES Spanish (Spain) gen nsp5 de Rotavirus A:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
fr-FR French (France) Rotavirus A nsp5 gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Rotavirus A, gene nsp5:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Gene nsp5 rotavirus A Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Rotavirus A nsp5-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar Rotavirus A nsp5 gen
tr-TR Turkish (Turkey) Rotavirus A nsp5 geni:MevcEşik:Zmlı:Dışkı:Srl:Prob.amf.hdf
Synonyms: Gaita; feçes Mevcut
zh-CN Chinese (China) 轮状病毒 A 组 nsp5 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: A 型 ROTAV;RV 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 轮状病毒(ROTAV、RV) A 组 nsp5 基因;A 组轮状病毒 nsp5 基因 轮状病毒(ROTAV、RV) A 组;A 组轮状病毒 遗传基因;遗传因子;吉恩;生物基因

80675-2 Rotavirus A VP6 gene [Presence] in Stool by NAA with probe detection

Term Description

Qualitative detection of targeted nucleic acid sequences in the Rotavirus serogroup A VP6 gene in stool specimens by real-time PCR-based methods. This term was created for, but not limited in use to, the submitter's test kit, xTAG® Gastrointestinal Pathogen Panel (GPP).
Source: Regenstrief LOINC

Fully-Specified Name

Component
Rotavirus A VP6 gene
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
RVA VP6 Stl Ql NAA+probe
Display Name
Rotavirus A VP6 gene NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Rotavirus A VP6 gene, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.64
Change Reason
Abbreviated "Rotavirus A" to "RVA" in the Shortname for consistency across terms.
Order vs. Observation
Both

Example Answer List LL360-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Rotavirus A VP6-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Sondendetektion
es-MX Spanish (Mexico) Gen del rotavirus A VP6:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
es-ES Spanish (Spain) Gen VP6 del Rotavirus A:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
fr-FR French (France) Rotavirus A VP6 gène:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Rotavirus A, gene VP6:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Gene VP6 rotavirus A Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Rotavirus A VP6-gen:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar Rotavirus A VP6 gen
zh-CN Chinese (China) 轮状病毒 A 组 VP6 基因:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: A 型 ROTAV;RV 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脱氧核糖核酸探针 轮状病毒(ROTAV、RV) A 组 VP6 基因;A 组轮状病毒 VP6 基因 轮状病毒(ROTAV、RV) A 组;A 组轮状病毒 遗传基因;遗传因子;吉恩;生物基因

92694-9 Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection

Fully-Specified Name

Component
Sapovirus genogroups I+II+IV+V RNA
Property
PrThr
Time
Pt
System
Stool
Scale
Ord
Method
Probe.amp.tar

Additional Names

Short Name
Sapo I+II+IV+V RNA Stl Ql NAA+probe
Display Name
Sapovirus genogroups I+II+IV+V RNA NAA+probe Ql (Stl)
Consumer Name Alpha Get Info
Sapovirus Genogroups I+II+IV+V, Stool

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.66
Order vs. Observation
Both

Example Answer List LL2038-9

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Indeterminate Copyright http://snomed.info/sct ID:82334004 Indeterminate (qualifier value) LA11884-6

Member of these Panels

LOINC Long Common Name
79381-0 Gastrointestinal pathogens panel - Stool by NAA with probe detection

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Genogrupos I+II+IV+V de Sapovirus RNA:PrThr:Punto temporal:Heces:Ord:Sonda con amplificación dirigida
es-MX Spanish (Mexico) Genogrupos de sapovirus I + II + IV + V ARN:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección de sonda
fr-FR French (France) Sapovirus I+II+IV+V ARN:Présence/Seuil:Ponctuel:Selle:Qualitatif:PCR amplification de cible
it-IT Italian (Italy) Sapovirus genogruppi I+II+IV+V RNA:PrThr:Pt:Feci:Ord:Sonda.amp.tar
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) Sapovirus genogroepen I+II+IV+V RNA:aanwezigheid:moment:feces:ordinaal:probe-detectie
Synonyms: ontlasting; feces probe.amp.tar
zh-CN Chinese (China) 札如病毒基因群 I+II+IV+V RNA:存在情况或阈值:时间点:大便:序数型:探针法.基因扩增.靶向
Synonyms: I 型 Sapovirus;SV;人类杯状病毒;Human Calicivirus;HuCV;札幌样病毒;Sapporo-like Virus;SLV V 型 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 时刻;随机;随意;瞬间 札如病毒(SV、札幌样病毒、SLV、人类杯状病毒、HuCV)基因群 I+II+IV 札如病毒(SV、札幌样病毒、SLV、人类杯状病毒、HuCV)基因群 I+II+IV+V 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针