94391-0
Respiratory viral pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection
Active
90463-1 Adenovirus DNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14061-3 Adenovirus
Adenoviruses, medium-sized (90-100 nm), non-enveloped icosohedral viruses with double-stranded DNA, have over 50 immunologically distinct types that cause infections in humans. Adenoviruses usually cause respiratory illness with symptoms ranging from the common cold to pneumonia, croup, and bronchitis. Adenoviruses can cause other illnesses such as gastroenteritis, conjunctivitis, cystitis, and less commonly, neurological disease. Infants and individuals with weakened immune systems are at high risk for severe complications of adenovirus infection and adenoviruses commonly cause acute respiratory illness in military recruits. Some asymptomatic people infected with adenoviruses have ongoing infections in their tonsils, adenoids, and intestines and can shed the virus for months or years. The virus can persist outside the body for long periods. Adenovirus infections can be detected using antigen detection, polymerase chain reaction assay, virus isolation, and serology. Typing is usually done by hemagglutination-inhibition and/or neutralization with type-specific antisera or by molecular methods. As of October 2014 there is no adenovirus vaccine for the general public, however an oral vaccine against types 4 and 7 was approved by the U.S. Food and Drug Administration in March 2011 for U.S. military personnel. The vaccine is recommended by the U.S. Department of Defense for military recruits entering basic training in order to prevent acute respiratory disease. Most adenovirus infections are mild and typically require only treatment of symptoms.
Source: Centers for Disease Control and Prevention, CDC: Adenovirus
Fully-Specified Name
- Component
- Adenovirus DNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HAdV DNA Lower resp Ql NAA+probe
- Display Name
- Adenovirus DNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Adenovirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.65
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92852-3 | Adenovirus and Bocavirus DNA panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34060-0 | Adenovirus DNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Adenovirus DNA: |
| es-MX | Spanish (Mexico) | ADN de adenovirus: |
| es-ES | Spanish (Spain) | Adenovirus ADN: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Adénovirus ADN: |
| it-IT | Italian (Italy) | Adenovirus DNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Adenovirus DNA: Synonyms: onderste ademhalingsstelsel; |
88558-2 Cytomegalovirus DNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14255-1 Cytomegalovirus
Cytomegalovirus is a member of the family Herpesviridae and also known as Human Herpesvirus-5 (HHV-5). It contains a linear double-stranded DNA encased in an icosahedral capsid that is surrounded by a viral envelope. It replicates slowly and may take weeks for the infection to become visible microscopically. Its life cycle includes a lytic and a latent phase. During the lytic phase the cytoskeleton of the infected cell is disrupted and becomes very large. The enlarged cell eludes detection by natural killer (NK) cells by encoding UL16. UL16 is a protein that binds to the ligand NDG2D which is a surface receptor on NK cells and, when blocked, prevents the CMV infected cell from apoptotic signaling to NK cells to destroy it.[https://pedclerk.bsd.uchicago.edu/page/cytomegalovirus-cmv] In the US one in three children are infected by CMV by the age of five and over half of adults are infected by age 40. Infection with CMV is mostly asymptomatic. Symptoms when present include fever, sore throat, fatigue, swollen glands. CMV can occasionally lead to mononucleosis or hepatitis. Immunocompromised patients experience much more acute symptoms that can affect the eyes, lungs, liver, esophagus, stomach, and intestines. For babies born with CMV, involvement with the brain, spleen, lung, liver can occur. In addition, there may be growth problems and hearing loss which is the most common symptom in congenital CMV infection. CMV is transmitted in urine, saliva, blood, tears, semen and breast milk by direct contact. Normally no treatment is necessary, but for severe cases medication is available.[https://www.cdc.gov/cmv/overview.html]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Cytomegalovirus DNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- CMV DNA Lower resp Ql NAA+probe
- Display Name
- CMV DNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Cytomegalovirus (CMV), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34031-1 | Cytomegalovirus DNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Cytomegalie-Virus DNA: Synonyms: CMV |
| es-MX | Spanish (Mexico) | ADN de citomegalovirus: |
| es-ES | Spanish (Spain) | Citomegalovirus ADN: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Cytomégalovirus ADN: |
| it-IT | Italian (Italy) | Citomegalovirus DNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Cytomegalovirus DNA: Synonyms: onderste ademhalingsstelsel; |
91066-1 Enterovirus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP16864-8 Enterovirus
Enteroviruses are small, non-enveloped, single stranded RNA viruses in the picornavirus family and include coxsackievirus, rhinovirus, echovirus, and poliovirus species. They are the most common viral pathogen worldwide, and clinical manifestations range from mild, cold-like symptoms to severe infections, including encephalitis, aseptic (viral) meningitis, and myocarditis. Enterovirus infection has also been associated with the onset of type I diabetes mellitus. PMID: 23764548
Source: Regenstrief LOINC, PMID: 23764548
Fully-Specified Name
- Component
- Enterovirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- EV RNA Lower resp Ql NAA+probe
- Display Name
- Enterovirus RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Enterovirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.65
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34062-6 | Enterovirus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Enterovirus RNA: |
| es-MX | Spanish (Mexico) | ARN de enterovirus: |
| es-ES | Spanish (Spain) | Enterovirus RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Entérovirus ARN: |
| it-IT | Italian (Italy) | Enterovirus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Enterovirus RNA: Synonyms: onderste ademhalingsstelsel; |
91130-5 Hantavirus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP16669-1 Hantavirus
Hantavirus is a genus of viruses transmitted by rodent urine, saliva or feces. Hantavirus infections may result in Hantavirus Pulmonary Syndrome (HPS) or Hemorrhagic Fever with Renal Syndrome (HFRS). Due to variations in the host rodent species, diverse hantavirus strains can be found throughout the world. In conjunction with history of exposure, serologic assays are used to detect the presence of hantavirus antibodies. The specific assays used varies from lab to lab, but may include enzyme-linked immunosorbent assay (ELISA), Western blot assay, or rapid immunoblot strip assay (RIBA).[CDC: hantavirus]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Hantavirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- Hantavirus RNA Lower resp Ql NAA+probe
- Display Name
- Hantavirus RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Hantavirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.65
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32758-1 | Hantavirus |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Hantavirus RNA: Synonyms: Orthohantavirus |
| es-MX | Spanish (Mexico) | ARN de hantavirus: |
| es-ES | Spanish (Spain) | Hantavirus RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Hantavirus ARN: |
| it-IT | Italian (Italy) | Antavirus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Hantavirus RNA: Synonyms: onderste ademhalingsstelsel; |
89585-4 Herpes simplex virus 1 DNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14821-0 Herpes simplex virus 1
Herpes simplex virus 1 and 2 (HSV-1 and HSV-2) are two species of the herpes virus family, Herpesviridae, which cause infections in humans. Eight members of herpes virus family infect humans and cause a variety of illnesses including cold sores, chickenpox or varicella, shingles or herpes zoster (VZV), cytomegalovirus (CMV). Some herpes viruses have been implicated in certain cancers and in the inflammation of the brain (encephalitis). All viruses in the herpes family produce life-long infections.
They are also called Human Herpes Virus 1 and 2 (HHV-1 and HHV-2) and are neurotropic and neuroinvasive viruses; they enter and hide in the human nervous system, accounting for their durability in the human body. HSV-1 is commonly associated with herpes outbreaks of the face known as cold sores or fever blisters, whereas HSV-2 is more often associated with genital herpes.
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, Herpes simplex virus 1
Fully-Specified Name
- Component
- Herpes simplex virus 1 DNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HSV1 DNA Lower resp Ql NAA+probe
- Display Name
- HSV 1 DNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Herpes simplex virus 1 (HSV 1), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92864-8 | Herpes simplex virus 1 and 2 DNA panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG50105-2 | Herpes simplex virus 1 DNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ADN del virus del herpes simplex 1: |
| es-ES | Spanish (Spain) | Virus Herpes simplex 1 ADN: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Herpes simplex virus 1 ADN: |
| it-IT | Italian (Italy) | Herpes simplex, virus 1 DNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HSV HSV-1 Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | herpes-simplexvirus 1 DNA: Synonyms: onderste ademhalingsstelsel; |
89587-0 Herpes simplex virus 2 DNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14401-1 Herpes simplex virus 2
Herpes simplex virus 1 and 2 (HSV-1 and HSV-2) are two species of the herpes virus family, Herpesviridae, which cause infections in humans. Eight members of herpes virus family infect humans and cause a variety of illnesses including cold sores, chickenpox or varicella, shingles or herpes zoster (VZV), cytomegalovirus (CMV). Some herpes viruses have been implicated in certain cancers and in the inflammation of the brain (encephalitis). All viruses in the herpes family produce life-long infections.
They are also called Human Herpes Virus 1 and 2 (HHV-1 and HHV-2) and are neurotropic and neuroinvasive viruses; they enter and hide in the human nervous system, accounting for their durability in the human body. HSV-1 is commonly associated with herpes outbreaks of the face known as cold sores or fever blisters, whereas HSV-2 is more often associated with genital herpes.
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, Herpes simplex virus 1
Fully-Specified Name
- Component
- Herpes simplex virus 2 DNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HSV2 DNA Lower resp Ql NAA+probe
- Display Name
- HSV 2 DNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Herpes simplex virus 2 (HSV 2), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92864-8 | Herpes simplex virus 1 and 2 DNA panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG50106-0 | Herpes simplex virus 2 DNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ADN del virus del herpes simplex 2: |
| es-ES | Spanish (Spain) | Virus Herpes simplex 2 ADN: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Herpes simplex virus 2 ADN: |
| it-IT | Italian (Italy) | Herpes simplex virus 2 DNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HSV HSV-2 Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | herpes-simplexvirus 2 DNA: Synonyms: onderste ademhalingsstelsel; |
89584-7 Herpes simplex virus DNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14558-8 Herpes simplex virus
The herpes simplex virus (HSV) manifests itself in two common viral infections, each marked by painful, watery blisters in the skin or mucous membranes (such as the mouth or lips) or on the genitals. The disease is contagious, particularly during an outbreak, and is incurable with present technology. An infection on the lips is commonly known as a cold sore or fever blister. These are sometimes confused with canker sores or aphthous ulcers, which have a similar appearance; these appear inside the mouth and are not caused by the herpes simplex virus. When not symptomatic HSV lies dormant in nerve cells, growing along the axons of the skin during an outbreak. When the outbreak has passed, the virus 'dies back' along the nerve until it is only present in the nerve body. The dormancy of the virus within the nerve bodies contributes to the difficulty of treatment.
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, Herpes simplex virus (Wikipedia)
Fully-Specified Name
- Component
- Herpes simplex virus DNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HSV DNA Lower resp Ql NAA+probe
- Display Name
- HSV DNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Herpes simplex virus (HSV), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ADN del virus del herpes simplex: |
| es-ES | Spanish (Spain) | Virus Herpes simplex ADN: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Herpes simplex virus ADN: |
| it-IT | Italian (Italy) | Herpes simplex, virus DNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HSV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | herpes-simplexvirus DNA: Synonyms: onderste ademhalingsstelsel; |
88593-9 Human bocavirus DNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP62090-3 Human bocavirus
Human bocavirus (HBoV) is a parvovirus that was first identified in 2005 and has been found in a variety of specimen types, including respiratory, stool, blood, and urine. It primarily causes respiratory symptoms in young children under the age of two. HBoV, like other paroviruses, is a small, icosahedral, non-enveloped DNA virus. Four subtypes of HBoV have been identified (HBoV 1-4), with subtypes 1-2 being the most common cause of illness. Subtype 1 is most often found in respiratory specimens, and types 2-4 in stool specimens. Transmission and infection typically occur in the winter and spring. PMID: 27818586
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Human bocavirus DNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HBoV DNA Lower resp Ql NAA+probe
- Display Name
- Human bocavirus DNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Human Bocavirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92852-3 | Adenovirus and Bocavirus DNA panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG41759-8 | Human bocavirus DNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ADN del bocavirus humano: |
| es-ES | Spanish (Spain) | Bocavirus humano ADN: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Bocavirus humain ADN: |
| it-IT | Italian (Italy) | Bocavirus umano DNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HBoV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Humaan bocavirus DNA: Synonyms: onderste ademhalingsstelsel; |
88608-5 Human coronavirus 229E RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP35708-4 Human coronavirus 229E
Human coronavirus 229E (HCoV229E) is a single-stranded, positive-sense, RNA virus species in the Alphacoronavirus genus of the subfamily Coronavirinae, in the family Coronaviridae, of the order Nidovirales. HCoV229E is associated with a range of respiratory symptoms, ranging from the common cold to high-morbidity outcomes such as pneumonia and bronchiolitis. It is also among the Coronaviruses most frequently co-detected with other respiratory viruses. PMID: 20554810
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Human coronavirus 229E RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HCoV 229E RNA Lower resp Ql NAA+probe
- Display Name
- HCoV 229E RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Human coronavirus 229E, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32771-4 | Human coronavirus |
| LG34137-6 | Human coronavirus 229E RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ARN del coronavirus humano 229E: |
| es-ES | Spanish (Spain) | Coronavirus Humano 229E RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Coronavirus humain 229E ARN: |
| it-IT | Italian (Italy) | Coronavirus umano 229E RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HCoV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Humaan coronavirus 229E RNA: Synonyms: onderste ademhalingsstelsel; |
92878-8 Human coronavirus 229E+HKU1+NL63+OC43 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP263694-4 Human coronavirus 229E+HKU1+NL63+OC43 RNA
Coronaviruses are positive-sense, single-stranded RNA viruses. The envelope of the virus has glycoprotein spikes that give it a crown-like appearance. There are six strains of coronavirus within two subgroups that infect humans. The strains of human coronaviruses that commonly infect people worldwide include 229E and NL63 in the Alpha subgroup and OC43 and HKU1 in the Beta subgroup. These viruses most often cause common cold symptoms, but can also lead to pneumonia. Severe acute respiratory syndrome coronavirus (SARS-CoV) and the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) are less common but cause more severe illness.[https://www.cdc.gov/coronavirus/types.html][https://academic.oup.com/cid/article/37/7/929/422314]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Human coronavirus 229E+HKU1+NL63+OC43 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- 4 HCoVs RNA Lower resp Ql NAA+probe
- Display Name
- HCoV 229E+HKU1+NL63+OC43 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Human coronavirus 229E+HKU1+NL63+OC43, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL2021-5
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92876-2 | Human coronavirus 229E+HKU1+NL63+OC43 and Parainfluenza virus 1+2+3+4 RNA panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32771-4 | Human coronavirus |
| LG50873-5 | Human coronavirus 229E+HKU1+NL63+OC43 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | Coronavirus humano 229E + HKU1 + NL63 + OC43 ARN: |
| es-ES | Spanish (Spain) | Coronavirus Humano 229E+HKU1+NL63+OC43 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Coronavirus humain 229E+HKU1+NL63+OC43 ARN: |
| it-IT | Italian (Italy) | Coronavirus umano 229E+HKU1+NL63+OC43 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HCoV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
88594-7 Human coronavirus HKU1 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP111518-9 Human coronavirus HKU1
Human coronavirus (HCoV) HKU1 was identified in Hong Kong in 2005. It is associated with upper and lower respiratory tract infections.
Source: Regenstrief LOINC
LP111518-9 Human coronavirus HKU1
HCoV-HKU1 is a common cause of both upper and lower respiratory tract self-limiting infections, most frequently in young children. Without laboratory diagnosis, typically through reverse transcription polymerase chain reaction (RT-PCR) of respiratory tract samples, HCoV-HKU1 respiratory tract infections cannot be distinguished from infections cause by other respiratory viruses. Treatment is of symptoms and in-line with general guidelines for support of viral respiratory infections. PMID: 21994538
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Human coronavirus HKU1 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HCoV HKU1 RNA Lower resp Ql NAA+probe
- Display Name
- HCoV HKU1 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Human coronavirus HKU1, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32771-4 | Human coronavirus |
| LG34135-0 | Human coronavirus HKU1 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ARN del coronavirus humano HKU1: |
| es-ES | Spanish (Spain) | Coronavirus humano HKU1 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Coronavirus humain HKU1 ARN: |
| it-IT | Italian (Italy) | Coronavirus umano HKU1 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HCoV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Humaan coronavirus HKU1 RNA: Synonyms: onderste ademhalingsstelsel; |
88616-8 Human coronavirus NL63 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP35709-2 Human coronavirus NL63
Human coronavirus (HCoV-NL63) was first identified in 2004 in a Dutch seven-month old infant with respiratory illness, but is now present world wide. HCoV-NL63 typically infects children and the immunocommpromised, with mild upper respiratory symptoms (cough, runny nose, fever) or more actue lower respiratory tract involvement such as bronchiolitis and croup. It is cause of up to 10% of all respiratory diseases. Most commonly, reverse transcription polymerase chain reaction (RT-PCR) and other nucleic acid tests of nasopharyngeal samples are used for diagnosing coronavirus infections.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Human coronavirus NL63 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HCoV NL63 RNA Lower resp Ql NAA+probe
- Display Name
- HCoV NL63 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Human coronavirus NL63, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32771-4 | Human coronavirus |
| LG34136-8 | Human coronavirus NL63 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ARN del coronavirus humano NL63: |
| es-ES | Spanish (Spain) | Coronavirus Humano NL63 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Coronavirus humain NL63 ARN: |
| it-IT | Italian (Italy) | Coronavirus umano NL63 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HCoV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Humaan coronavirus NL63 RNA: Synonyms: onderste ademhalingsstelsel; |
88605-1 Human coronavirus OC43 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP35710-0 Human coronavirus OC43
Coronaviruses, named for the crown-like spikes on their surface, are common viruses that cause mild to moderate upper-respiratory tract illnesses of a short duration. There are four main sub-groupings of coronaviruses, known as alpha, beta, gamma, and delta. The six coronaviruses that can infect humans are: alpha coronaviruses 229E and NL63, and beta coronaviruses OC43, HKU1, SARS-CoV (the coronavirus that causes severe acute respiratory syndrome, or SARS), and MERS-CoV (Middle East Respiratory Syndrome, or MERS). Infections are common with human coronaviruses 229E, NL63, OC43, and HKU1. The exceptions are SARS-CoV and MERS-CoV. SARS-CoV (severe acute respiratory syndrome) was first recognized in China in November 2002 causing a worldwide outbreak from 2002 to 2003. Since 2004, there have no reported cases of SARS-CoV infection. MERS-CoV, first reported in Saudi Arabia in 2012, has caused illness in hundreds of people from several countries. All cases to date have been linked to countries in and near the Arabian Peninsula.
Source: Regenstrief LOINC, CDC: Coronavirus
Fully-Specified Name
- Component
- Human coronavirus OC43 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HCoV OC43 RNA Lower resp Ql NAA+probe
- Display Name
- HCoV OC43 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Human coronavirus OC43, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32771-4 | Human coronavirus |
| LG34138-4 | Human coronavirus OC43 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ARN del coronavirus humano OC43: |
| es-ES | Spanish (Spain) | Coronavirus Humano OC43 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Coronavirus humain OC43 ARN: |
| it-IT | Italian (Italy) | Coronavirus umano OC43 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HCoV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Humaan coronavirus OC43 RNA: Synonyms: onderste ademhalingsstelsel; |
88620-0 Human coronavirus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP35707-6 Human coronavirus
Coronaviruses (CoVs) are enveloped, non-segmented positive-sense RNA viruses that cause a range of respiratory infections in humans from mild respiratory symptoms to Severe Acute Respiratory Syndrome (SARS-CoV). Typically the virus is allowed to run its course and explicit identification of the virus is not needed. When identifying the virus is necessary for specific clinical cases or epidemiological studies, reverse transcription polymerase chain reaction (RT-PCR) is used, though serologic assays may be needed in cases where RNA is hard to isolate, no longer present, and for epidemiological studies. Treatment is primarily supportive. PMID: 25720466
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Human coronavirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HCoV RNA Lower resp Ql NAA+probe
- Display Name
- HCoV RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Human coronavirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32771-4 | Human coronavirus |
| LG41760-6 | Human coronavirus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ARN del coronavirus humano: |
| es-ES | Spanish (Spain) | Coronavirus Humano RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Coronavirus humain ARN: |
| it-IT | Italian (Italy) | Coronavirus umano RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore HCoV Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Humaan coronavirus RNA: Synonyms: onderste ademhalingsstelsel; |
89651-4 Human metapneumovirus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP34982-6 Human metapneumovirus
Human metapneumovirus (hMPV) is a Paramyxoviridae family virus that causes upper and lower respiratory tract infections in the very young, elderly and those with compromised immune systems. hMPV can vary in its size, shape and staining properties, and shares similar structure with avian pneumovirus (aMPV) and human respiratory syncytial virus (hRSV). Typically, molecular testing methods, like reverse transcriptase PCR (RT-PCR), are used to detect hMPV. hMPV is thought to be responsible for about 5% to 10% of pediatric hospitalizations of those suffering from acute respiratory tract infection. PMID: 24841931
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Human metapneumovirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- hMPV RNA Lower resp Ql NAA+probe
- Display Name
- hMPV RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Human metapneumovirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.65
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92880-4 | Human metapneumovirus and Respiratory syncytial virus RNA panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34090-7 | Human metapneumovirus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ARN del metaneumovirus humano: |
| es-ES | Spanish (Spain) | Metaneumovirus humano RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Métapneumovirus humain ARN: |
| it-IT | Italian (Italy) | Metapneumovirus umano RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Humaan metapneumovirus RNA: Synonyms: onderste ademhalingsstelsel; |
94395-1 Influenza virus A H1 2009 pandemic RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP94776-9 Influenza virus A H1 2009 pandemic
An influenza virus that had never been identified as a cause of infections in people before the 2009 H1N1 (Swine flu) pandemic. Genetic analyses of this virus showed that it originated from animal influenza viruses and was unrelated to the human seasonal H1N1 viruses that had been in general circulation among people since 1977. Antibodies to the seasonal H1N1 virus did not protect against the pandemic H1N1 virus, however a significant percentage of people age 65 and older had some immunity against the pandemic virus. After early outbreaks in North America in April 2009 the new influenza virus spread rapidly around the world. Unlike typical seasonal flu patterns, the new virus caused high levels of summer infections in the northern hemisphere, and then even higher levels of activity during cooler months. The virus also led to patterns of death and illness not normally seen in influenza infections. Most of the deaths occurred among younger people, including those who were otherwise healthy.
Source: Regenstrief LOINC, WHO: What is the pandemic (H1N1) 2009 virus?
Fully-Specified Name
- Component
- Influenza virus A H1 2009 pandemic RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- FLUAV H1 09 pan RNA Lo Rsp Ql NAA+probe
- Display Name
- FLUAV H1 2009 pand RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Influenza A H1 2009 Pand, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.68
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32757-3 | Influenza virus |
| LG34094-9 | Influenza virus A H1 2009 pandemic RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Influenza-Virus A H1 (Pandemie 2009) RNA: |
| es-ES | Spanish (Spain) | Hemaglutinina H1 del virus Influenza A de origen porcino RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| es-MX | Spanish (Mexico) | ARN pandémico del virus de la influenza A H1 2009: |
| fr-FR | French (France) | Influenza virus A H1N1(2009) ARN: |
| it-IT | Italian (Italy) | Influenza A H1 2009 pandemica, virus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus dell''influenza Virus dell''influenza A Virus dell''influenza A H1 Virus dell''influenza A H1 2009 pandemica |
| nl-NL | Dutch (Netherlands) | Influenzavirus A H1 2009 pandemisch RNA: Synonyms: onderste ademhalingsstelsel; |
94396-9 Influenza virus A H1 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP35168-1 Influenza virus A H1
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Influenza virus A H1 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- FLUAV H1 RNA Lower resp Ql NAA+probe
- Display Name
- FLUAV H1 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Influenza A H1, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.68
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32757-3 | Influenza virus |
| LG34092-3 | Influenza virus A H1 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Influenza-Virus A H1 RNA: |
| es-ES | Spanish (Spain) | Hemaglutinina H1 del virus Influenza A RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| es-MX | Spanish (Mexico) | ARN del virus de la influenza A H1: |
| fr-FR | French (France) | Influenza virus A H1 ARN: |
| it-IT | Italian (Italy) | Influenza A H1, virus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus dell''influenza Virus dell''influenza A Virus dell''influenza A H1 |
| nl-NL | Dutch (Netherlands) | Influenzavirus A H1 RNA: Synonyms: onderste ademhalingsstelsel; |
94394-4 Influenza virus A H3 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP35176-4 Influenza virus A H3
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Influenza virus A H3 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- FLUAV H3 RNA Lower resp Ql NAA+probe
- Display Name
- FLUAV H3 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Influenza A H3, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.68
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32757-3 | Influenza virus |
| LG34093-1 | Influenza virus A H3 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Influenza-Virus A H3 RNA: |
| es-ES | Spanish (Spain) | Hemaglutinina H3 del virus Influenza A RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| es-MX | Spanish (Mexico) | ARN del virus de la influenza A H3: |
| fr-FR | French (France) | Influenza virus A H3 ARN: |
| it-IT | Italian (Italy) | Influenza A H3, virus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus dell''influenza Virus dell''influenza A Virus dell''influenza A H3 |
| nl-NL | Dutch (Netherlands) | Influenzavirus A H3 RNA: Synonyms: onderste ademhalingsstelsel; |
92977-8 Influenza virus A RNA [Presence] in Lower respiratory specimen by NAA with non-probe detection
Part Descriptions
LP14239-5 Influenza virus A
Influenza viruses, from the family Orthomyxoviridae, are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C are medically relevant to humans. Aquatic birds harboring avian IAV are the likely natural reservoir for all known IAV subtypes and are probably the original source of all human pandemic IAV strains. IAV maintained in wild birds have been associated with stable host switch events to novel hosts, including most often to domestic poultry but also to horses, swine, toothed whales and humans. The influenza virus life cycle begins with the binding of viral HA to host cell receptors. Endocytosis and HA-mediated fusion of the viral and cellular membranes occurs. Viral ribonucleoprotein complexes are released into the cytoplasm, travel to the nucleus, then are replicated and transcribed by the viral polymerase complex. The new viruses are formed and bud when the newly formed ribonucleicprotein complexes and structural proteins reach the plasma membrane. Further research is needed to better understand how IAVs switch hosts and the viral genetic changes that underlie human adaptation. IAV causes respiratory infections in humans ranging from asymptomatic to fatal. Pandemics are attributed to "novel" viruses which possess a viral hemagglutinin (HA) to which humans do not have immunity. PMID: 20542248 ] PMID: 25812763
Influenza viruses A and B are single-stranded RNA enveloped viruses belonging to the Orthomyxoviridae family. The symptoms of infection of Influenza A and B include fever, cough, sore throat, rhinorrhea, nasal congestion, headache, myalgia and malaise. Some patients may experience gastrointestinal symptoms including watery diarrhea, vomiting and abdominal pain. The influenza viruses spread rapidly in enclosed spaces with a documented rate of infection of 70% following a common source of exposure. Infection occurs in the respiratory epithelium in both the upper and lower respiratory tract, and the virus can be found in many specimen types, including nasal aspirates, nasal or nasopharyngeal swabs, throat swabs, sputum and tracheal aspirates. When infection rates reach epidemic proportions, hospitalization of children and elderly patients rises as does the mortality rates of elderly patients.(Manual of Clinical Microbiology, 11th edition, James H. Jorgensen; Karen C. Carroll; Guido Funke; Michael A Pfaller; Marie Louise Landry; Sandra S. Richter; David W. Warnock)
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Influenza virus A RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Non-probe.amp.tar
Additional Names
- Short Name
- FLUAV RNA Lower resp Ql NAA+non-probe
- Display Name
- FLUAV RNA NAA+non-probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Influenza A (Flu A), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92958-8 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with non-probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32757-3 | Influenza virus |
| LG34064-2 | Influenza virus A RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Influenza-Virus A RNA: |
| es-MX | Spanish (Mexico) | ARN del virus de la influenza A: |
| es-ES | Spanish (Spain) | Virus Influenza A RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Influenza virus A ARN: |
| it-IT | Italian (Italy) | Influenza A, virus RNA: Synonyms: Amplificazione target non basata su sonda Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus dell''influenza Virus dell''influenza A |
88599-6 Influenza virus A RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14239-5 Influenza virus A
Influenza viruses, from the family Orthomyxoviridae, are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C are medically relevant to humans. Aquatic birds harboring avian IAV are the likely natural reservoir for all known IAV subtypes and are probably the original source of all human pandemic IAV strains. IAV maintained in wild birds have been associated with stable host switch events to novel hosts, including most often to domestic poultry but also to horses, swine, toothed whales and humans. The influenza virus life cycle begins with the binding of viral HA to host cell receptors. Endocytosis and HA-mediated fusion of the viral and cellular membranes occurs. Viral ribonucleoprotein complexes are released into the cytoplasm, travel to the nucleus, then are replicated and transcribed by the viral polymerase complex. The new viruses are formed and bud when the newly formed ribonucleicprotein complexes and structural proteins reach the plasma membrane. Further research is needed to better understand how IAVs switch hosts and the viral genetic changes that underlie human adaptation. IAV causes respiratory infections in humans ranging from asymptomatic to fatal. Pandemics are attributed to "novel" viruses which possess a viral hemagglutinin (HA) to which humans do not have immunity. PMID: 20542248 ] PMID: 25812763
Influenza viruses A and B are single-stranded RNA enveloped viruses belonging to the Orthomyxoviridae family. The symptoms of infection of Influenza A and B include fever, cough, sore throat, rhinorrhea, nasal congestion, headache, myalgia and malaise. Some patients may experience gastrointestinal symptoms including watery diarrhea, vomiting and abdominal pain. The influenza viruses spread rapidly in enclosed spaces with a documented rate of infection of 70% following a common source of exposure. Infection occurs in the respiratory epithelium in both the upper and lower respiratory tract, and the virus can be found in many specimen types, including nasal aspirates, nasal or nasopharyngeal swabs, throat swabs, sputum and tracheal aspirates. When infection rates reach epidemic proportions, hospitalization of children and elderly patients rises as does the mortality rates of elderly patients.(Manual of Clinical Microbiology, 11th edition, James H. Jorgensen; Karen C. Carroll; Guido Funke; Michael A Pfaller; Marie Louise Landry; Sandra S. Richter; David W. Warnock)
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Influenza virus A RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- FLUAV RNA Lower resp Ql NAA+probe
- Display Name
- FLUAV RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Influenza A (Flu A), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88601-0 | Influenza virus types A and B panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32757-3 | Influenza virus |
| LG34064-2 | Influenza virus A RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Influenza-Virus A RNA: |
| es-MX | Spanish (Mexico) | ARN del virus de la influenza A: |
| es-ES | Spanish (Spain) | Virus Influenza A RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Influenza virus A ARN: |
| it-IT | Italian (Italy) | Influenza A, virus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus dell''influenza Virus dell''influenza A |
| nl-NL | Dutch (Netherlands) | Influenzavirus A RNA: Synonyms: onderste ademhalingsstelsel; |
88592-1 Influenza virus B RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14240-3 Influenza virus B
Influenza virus from the family Orthomyxoviridae are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C viruses are medically relevant to humans. Influenza A and B viruses have a similar structure whereby these viruses each contain eight discrete single-stranded RNA gene segments, each encoding at least one protein. While having a close phylogenetic relationship, influenza virus types A and B manifest very differently. While IAV infects birds, humans and other mammals, influenza B only infects humans and seals. Although both viruses cause human respiratory infection seasonally in temperate climate regions and more continually in the tropics, influenza B is normally less prevalent and causes less severe disease than IAV viruses. Research is ongoing to determine the evolutionary and epidemiological factors that shape the genetic diversity of influenza B virus. PMID: 25812763 [CDC:flu/about/viruses/types]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Influenza virus B RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- FLUBV RNA Lower resp Ql NAA+probe
- Display Name
- FLUBV RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Influenza B (Flu B), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 88601-0 | Influenza virus types A and B panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32757-3 | Influenza virus |
| LG34065-9 | Influenza virus B RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Influenza-Virus B RNA: |
| es-MX | Spanish (Mexico) | ARN del virus de la influenza B: |
| es-ES | Spanish (Spain) | Virus Influenza B RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Influenza virus B ARN: |
| it-IT | Italian (Italy) | Influenza B, virus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus dell''influenza Virus dell''influenza B |
| nl-NL | Dutch (Netherlands) | Influenzavirus B RNA: Synonyms: onderste ademhalingsstelsel; |
91132-1 Measles virus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP16722-8 Measles virus
Measles, also known as rubeola, is a disease caused by a virus, specifically a paramyxovirus of the genus Morbillivirus. Reports of measles go back to at least 600 BCE, although, the first scientific description of the disease and its distinction from smallpox is attributed to the Persian physician Ibn Razi (Rhazes) 860-932 who published a book entitled Smallpox and Measles (in Arabic: Kitab fi al-jadari wa-al-hasbah). In 1954, the virus was isolated, and vaccines became available in 1963. Measles is spread through contact with fluids from an infected person's nose and mouth, either directly or through aerosol and is highly contagious. Ninety percent of people without immunity living in close quarters with an infected person will catch the disease. The incubation period usually lasts between 10-12 days and during that time there are no symptoms.
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, Measles virus (Wikipedia)
Fully-Specified Name
- Component
- Measles virus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- MeV RNA Lower resp Ql NAA+probe
- Display Name
- MeV RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Measles virus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.65
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32756-5 | Measles virus |
| LG50131-8 | Measles virus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Masern-Virus RNA: Synonyms: Measles morbillivirus |
| es-MX | Spanish (Mexico) | ARN del virus del sarampión: |
| es-ES | Spanish (Spain) | Virus del Sarampión RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Rougeole virus ARN: |
| it-IT | Italian (Italy) | Morbillo, virus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus di morbillo |
| nl-NL | Dutch (Netherlands) | Mazelenvirus RNA: Synonyms: onderste ademhalingsstelsel; |
91830-0 Middle East respiratory syndrome coronavirus (MERS-CoV) RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP173753-7 Middle East respiratory syndrome coronavirus
Middle East Respiratory Syndrome (MERS) is an illness caused by the virus Middle East Respiratory Syndrome Coronovirus (MERS-CoV). The illness was first reported in Saudi Arabia in 2012, but was later found to have originated in Jordan in 2012. MERS has been found in camels leading to speculation that they may be the initial reservoir for the virus. The largest outbreak of MERS that has occurred outside of the Arabian Peninsula was in the Republic of Korea in 2015 and was linked to an individual who had been traveling in the Arabian Peninsula. The virus is probably spread through respiratory secretions from infected individuals though the exact mode of transmission is under investigation. Infection with MERS begins with an incubation period of 5-6 days followed by a severe acute illness that involves fever, shortness of breath and for patients with comorbidities or reduced immunity can lead to pneumonia and kidney failure. The mortality rate of MERS is 3-4 out of 10 people who are infected, though most of the people who die have underlying conditions. In addition, some people experience only cold-like symptoms and others have no symptoms at all. In the United States, most state laboratories are approved to test for MERS-CoV using the real-time reverse transcription-PCR assay developed by the CDC. The assay can be run on respiratory, serum and stool specimens.[CDC: coronavirus/mers]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Middle east respiratory syndrome coronavirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- MERS-CoV RNA Lower resp Ql NAA+probe
- Display Name
- MERS-CoV RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Middle East respiratory syndrome coronavirus (MERS-CoV), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG50060-9 | Middle East respiratory syndrome coronavirus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Middle East respiratory syndrome coronavirus (MERS CoV) RNA: |
| es-MX | Spanish (Mexico) | Síndrome respiratorio de Oriente Medio coronavirus ARN: |
| es-ES | Spanish (Spain) | Coronavirus del sindrome respiratorio de Oriente medio RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Coronavirus MERS ARN: |
| it-IT | Italian (Italy) | Sindrome respiratoria mediorientale da Coronavirus (MERS) RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Middle East Respiratory Syndrome-coronavirus RNA: Synonyms: MERS-coronavirus MERS-coronavirus; |
88563-2 Parainfluenza virus 1 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14241-1 Parainfluenza virus 1
HPIV-1 causes biennial outbreaks of croup in the fall (presently in the United States during odd numbered years). HPIVs are negative-sense, single-stranded RNA viruses that possess fusion and hemagglutinin-neuraminidase glycoprotein "spikes" on their surface. HPIVs are spread from respiratory secretions through close contact with infected persons or contact with contaminated surfaces or objects. HPIVs are ubiquitous and infect most people during childhood.
Source: Regenstrief Institute
Fully-Specified Name
- Component
- Parainfluenza virus 1 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HPIV1 RNA Lower resp Ql NAA+probe
- Display Name
- Parainfluenza virus 1 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Parainfluenza virus 1, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34067-5 | Parainfluenza virus 1 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Parainfluenza-Virus 1 RNA: Synonyms: Human respirovirus 1 |
| es-MX | Spanish (Mexico) | ARN del virus de la parainfluenza 1: |
| es-ES | Spanish (Spain) | Virus parainfluenza tipo 1 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Parainfluenza virus 1 ARN: |
| it-IT | Italian (Italy) | Parainfluenza virus 1 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus parainfluenzale Virus parainfluenzale di tipo 1 |
| nl-NL | Dutch (Netherlands) | Para-influenzavirus 1 RNA: Synonyms: onderste ademhalingsstelsel; |
92883-8 Parainfluenza virus 1+2+3+4 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP145690-6 Parainfluenza virus 1+2+3+4
Human parainfluenza viruses (HPIVs) have been recognized as a cause of respiratory tract infections for many decades. They belong to the Paramyxoviridae family, subfamily Paramyxovirinae, and are classified into 4 serotypes. Serotype 4 can be further subdivided into 2 antigenic subtypes, HPIV-4A and HPIV-4B.
Source: Centers for Disease Control and Prevention, CDC
LP145690-6 Parainfluenza virus 1+2+3+4
Parainfluenza virus is from the family Paramyxoviridae and the genera Paramyxovirus which includes the parainfluenza viruses and the mumps virus. Paramyxoviruses are particles up to 300 nm in diameter. They are spiral, tube-like symmetrical nucleocapsids which contain a monopartite, single-stranded, negative-sense RNA genome and an RNA-directed RNA polymerase. There is a matrix protein at the base of a double-layered lipid envelope which contains spikes with two glycoproteins, a viral attachment protein and a fusion protein. The viral protein spikes in parainfluenza viruses have hemagglutinating and neuraminidase activities. As all paramyxoviruses are labile, they are quickly inactivated (e.g., by heat, detergents, ultraviolet light). Primary infections occur in young children and cause mild or severe upper and lower respiratory tract infections. Reinfection is common and results in milder manifestation. Transmission is by direct contact or by droplets. Parainfluenza virus diseases are usually endemic although they can be epidemic. [NCBI Books:NBK8461]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Parainfluenza virus 1+2+3+4 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HPIV 1+2+3+4 RNA Lower resp Ql NAA+probe
- Display Name
- Parainfluenza virus 1+2+3+4 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Parainfluenza virus 1+2+3+4, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL2021-5
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92876-2 | Human coronavirus 229E+HKU1+NL63+OC43 and Parainfluenza virus 1+2+3+4 RNA panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG50887-5 | Parainfluenza virus 1+2+3+4 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Parainfluenza-Virus 1+2+3+4 RNA: |
| es-MX | Spanish (Mexico) | Virus de la parainfluenza 1 + 2 + 3 + 4 ARN: |
| es-ES | Spanish (Spain) | Parainfluenza virus 1+2+3+4 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Parainfluenza virus 1+2+3+4 ARN: |
| it-IT | Italian (Italy) | Parainfluenza virus 1+2+3+4 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus parainfluenzale Virus parainfluenzale di tipo 1 Virus parainfluenzale di tipo 1+2+3 Virus parainfluenzale di tipo 1+2+3+4 |
| nl-NL | Dutch (Netherlands) | Para-influenzavirus 1+2+3+4 RNA: Synonyms: onderste ademhalingsstelsel; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
88559-0 Parainfluenza virus 2 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14242-9 Parainfluenza virus 2
Human parainfluenza viruses (HPIVs) are a group of four distinct serotypes of single-stranded RNA viruses belonging to the paramyxovirus family. They are the second most common cause of lower respiratory tract infection in younger children. Repeated infection throughout the life of the host is not uncommon. Symptoms of later breakouts include upper respiratory tract illness as in a cold and sore throat. The incubation period of all four serotypes is 1 to 7 days. Parainfluenza viruses can be detected via cell culture, immunofluorescent microscopy, and PCR. Though no vaccines currently exist, research into vaccines for HPIV-1, -2, and -3 is underway. Parainfluenza viruses last only a few hours in the environment and are inactivated by soap and water.
Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details.
Source: Wikipedia, Parainfluenza virus 2 (Wikipedia)
Fully-Specified Name
- Component
- Parainfluenza virus 2 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HPIV2 RNA Lower resp Ql NAA+probe
- Display Name
- Parainfluenza virus 2 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Parainfluenza virus 2, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34068-3 | Parainfluenza virus 2 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Parainfluenza-Virus 2 RNA: Synonyms: Human rubulavirus 2 |
| es-MX | Spanish (Mexico) | ARN del virus de la parainfluenza 2: |
| es-ES | Spanish (Spain) | Virus parainfluenza tipo 2 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Parainfluenza virus 2 ARN: |
| it-IT | Italian (Italy) | Parainfluenza virus 2 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus parainfluenzale Virus parainfluenzale di tipo 2 |
| nl-NL | Dutch (Netherlands) | Para-influenzavirus 2 RNA: Synonyms: onderste ademhalingsstelsel; |
88560-8 Parainfluenza virus 3 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14243-7 Parainfluenza virus 3
HPIV-3 peak activity occurs during the spring and early summer months each year, but the virus can be isolated througout the year. HPIVs are negative-sense, single-stranded RNA viruses that possess fusion and hemagglutinin-neuraminidase glycoprotein "spikes" on their surface. HPIVs are spread from respiratory secretions through close contact with infected persons or contact with contaminated surfaces or objects. HPIVs are ubiquitous and infect most people during childhood.
Source: Regenstrief Institute
Fully-Specified Name
- Component
- Parainfluenza virus 3 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HPIV3 RNA Lower resp Ql NAA+probe
- Display Name
- Parainfluenza virus 3 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Parainfluenza virus 3, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34069-1 | Parainfluenza virus 3 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Parainfluenza-Virus 3 RNA: Synonyms: Human respirovirus 3 |
| es-MX | Spanish (Mexico) | ARN del virus de la parainfluenza 3: |
| es-ES | Spanish (Spain) | Virus parainfluenza tipo 3 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Parainfluenza virus 3 ARN: |
| it-IT | Italian (Italy) | Parainfluenza virus 3 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus parainfluenzale Virus parainfluenzale di tipo 3 |
| nl-NL | Dutch (Netherlands) | Para-influenzavirus 3 RNA: Synonyms: onderste ademhalingsstelsel; |
88561-6 Parainfluenza virus 4 RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP35704-3 Parainfluenza virus 4
Human parainfluenza viruses (HPIVs) are common causes of respiratory tract disease in infants and young children. Each of the four HPIVs has different clinical and epidemiologic features. HPIV-4 is detected infrequently, and is less likely to cause severe disease; but it may be more common than once thought.
Source: Centers for Disease Control and Prevention, CDC
LP35704-3 Parainfluenza virus 4
Human parainfluenza viruses (HPIVs) have been recognized as a cause of respiratory tract infections for many decades. They belong to the Paramyxoviridae family, subfamily Paramyxovirinae, and are classified into 4 serotypes. Serotype 4 can be further subdivided into 2 antigenic subtypes, HPIV-4A and HPIV-4B.
Source: Centers for Disease Control and Prevention, CDC
Fully-Specified Name
- Component
- Parainfluenza virus 4 RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HPIV4 RNA Lower resp Ql NAA+probe
- Display Name
- Parainfluenza virus 4 RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Parainfluenza virus 4, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34070-9 | Parainfluenza virus 4 RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Parainfluenza-Virus 4 RNA: Synonyms: Human rubulavirus 4 |
| es-MX | Spanish (Mexico) | ARN del virus 4 de la parainfluenza: |
| es-ES | Spanish (Spain) | Virus Parainfluenza 4 RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Parainfluenza virus 4 ARN: |
| it-IT | Italian (Italy) | Parainfluenza virus 4 RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus parainfluenzale Virus parainfluenzale di tipo 4 |
| nl-NL | Dutch (Netherlands) | Para-influenzavirus 4 RNA: Synonyms: onderste ademhalingsstelsel; |
88562-4 Parainfluenza virus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP18337-3 Parainfluenza virus
Parainfluenza virus is from the family Paramyxoviridae and the genera Paramyxovirus which includes the parainfluenza viruses and the mumps virus. Paramyxoviruses are particles up to 300 nm in diameter. They are spiral, tube-like symmetrical nucleocapsids which contain a monopartite, single-stranded, negative-sense RNA genome and an RNA-directed RNA polymerase. There is a matrix protein at the base of a double-layered lipid envelope which contains spikes with two glycoproteins, a viral attachment protein and a fusion protein. The viral protein spikes in parainfluenza viruses have hemagglutinating and neuraminidase activities. As all paramyxoviruses are labile, they are quickly inactivated (e.g., by heat, detergents, ultraviolet light). Primary infections occur in young children and cause mild or severe upper and lower respiratory tract infections. Reinfection is common and results in milder manifestation. Transmission is by direct contact or by droplets. Parainfluenza virus diseases are usually endemic although they can be epidemic. [NCBI Books:NBK8461]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Parainfluenza virus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- HPIV RNA Lower resp Ql NAA+probe
- Display Name
- Parainfluenza virus RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Parainfluenza virus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG50850-3 | Parainfluenza virus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Parainfluenza-Virus RNA: |
| es-MX | Spanish (Mexico) | ARN del virus de la parainfluenza: |
| es-ES | Spanish (Spain) | Virus Parainfluenzae RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Parainfluenza virus ARN: |
| it-IT | Italian (Italy) | Parainfluenza virus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus parainfluenzale |
| nl-NL | Dutch (Netherlands) | Para-influenzavirus RNA: Synonyms: onderste ademhalingsstelsel; |
91825-0 Parechovirus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP101466-3 Parechovirus
Parechovirus is a viral genus in the family Picornaviridae and contains two species, Human parechovirus (HPeV) and Ljungan virus (LV). HPeVs cause various diseases, including aseptic meningitis, gastroenteritis, encephalitis, acute respiratory illness, and neonatal sepsis-like disease. LVs may be involved with diseases such as type 1 diabetes mellitus, myocarditis, and Guillain-Barre syndrome. Methods such as real-time reverse transcription-PCR (RT-PCR) are performed to detect members of the genus Parechovirus. Some RT-PCR assay can detect both HPeVs and LVs targeting the conserved regions in the 5' nontranslated region (5'NTR) of the parechovirus genome. Other assays target only known HPeVs or only LVs.
Source: Regenstrief LOINC, PMID: 18524969
LP101466-3 Parechovirus
The Parechovirus belongs to the family Picornaviridae and is a small, nonenveloped RNA virus with icosahedral capsids. There are two species of Parechovirus including Parechovirus A (HPeV), previously named Human parechovirus, and Parechovirus B, previously named Ljungan virus. HPeV is made up of nineteen types designated as HPeV-1 to HPeV-19. Human infection by HPeV occurs worldwide and is often asymptomatic. Transmission of HPeV is by the fecal-oral route, respiratory secretions and fomites. When symptoms occur, they usually consist of mild gastroenteritis and respiratory symptoms. More serious disease has been attributed to HPeV-3, which can cause neonatal sepsis and aseptic meningitis in children. In 9 out of 10 neonates infected with HPeV-3, there is white matter damage which can lead to cerebral palsy, epilepsy and learning disabilities. There is no FDA approved anti-viral treatment for HPeV available, though there are some therapies in development that target viral capsid proteins, proteases and polymerase. [http://www.picornaviridae.com/parechovirus/parechovirus.htm][https://wwwnc.cdc.gov/eid/article/20/1/pdfs/13-0569.pdf
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Parechovirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- PeV RNA Lower resp Ql NAA+probe
- Display Name
- Parechovirus RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Parechovirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG50860-2 | Parechovirus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ARN de parechovirus: |
| es-ES | Spanish (Spain) | Parechovirus RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Paréchovirus ARN: |
| it-IT | Italian (Italy) | Parechovirus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | Parechovirus RNA: Synonyms: onderste ademhalingsstelsel; |
88595-4 Respiratory syncytial virus A RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP39552-2 Respiratory syncytial virus A RNA
Human respiratory syncytial virus (RSV), a negative-sense, single-stranded RNA virus of the family Paramyxoviridae, causes upper respiratory tract infections and bronchiolitis, an infection of the small airways that can cause wheezing and respiratory distress. Infants, especially those that were born prematurely, are particularly susceptible, and RSV bronchiolitis is a common cause of hospitalization for infants during the winter months. Certain groups of high-risk infants may be given palivizumab, a recombinant monoclonal antibody to RSV, as prophylaxis against RSV infection.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Respiratory syncytial virus A RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- RSV A RNA Lower resp Ql NAA+probe
- Display Name
- RSV A RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Respiratory syncytial virus (RSV) A, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34088-1 | Respiratory syncytial virus A RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Respiratorisches Synzytial-Virus A RNA: |
| es-MX | Spanish (Mexico) | Virus respiratorio sincitial A ARN: |
| es-ES | Spanish (Spain) | Virus respiratorio sincitial A RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Virus respiratoire syncytial A ARN: |
| it-IT | Italian (Italy) | Virus respiratorio sinciziale A RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA VRS |
| nl-NL | Dutch (Netherlands) | respiratoir syncytieel virus A RNA: Synonyms: onderste ademhalingsstelsel; |
88597-0 Respiratory syncytial virus B RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP39553-0 Respiratory syncytial virus B RNA
Human respiratory syncytial virus (RSV), a negative-sense, single-stranded RNA virus of the family Paramyxoviridae, causes upper respiratory tract infections and bronchiolitis, an infection of the small airways that can cause wheezing and respiratory distress. Infants, especially those that were born prematurely, are particularly susceptible, and RSV bronchiolitis is a common cause of hospitalization for infants during the winter months. Certain groups of high-risk infants may be given palivizumab, a recombinant monoclonal antibody to RSV, as prophylaxis against RSV infection.
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Respiratory syncytial virus B RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- RSV B RNA Lower resp Ql NAA+probe
- Display Name
- RSV B RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Respiratory syncytial virus (RSV) B, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34089-9 | Respiratory syncytial virus B RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Respiratorisches Synzytial-Virus B RNA: |
| es-MX | Spanish (Mexico) | ARN del virus B sincitial respiratorio: |
| es-ES | Spanish (Spain) | Virus respiratorio sincitial B RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Virus respiratoire syncytial B ARN: |
| it-IT | Italian (Italy) | Virus respiratorio sinciziale B RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA VRS |
| nl-NL | Dutch (Netherlands) | respiratoir syncytieel virus B RNA: Synonyms: onderste ademhalingsstelsel; |
91133-9 Respiratory syncytial virus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14244-5 Respiratory syncytial virus
Human respiratory syncytial virus (RSV), a negative-sense, single-stranded RNA virus of the family Paramyxoviridae, causes upper respiratory tract infections and bronchiolitis, an infection of the small airways that can cause wheezing and respiratory distress. Infants, especially those that were born prematurely, are particularly susceptible, and RSV bronchiolitis is a common cause of hospitalization for infants during the winter months. Certain groups of high-risk infants may be given palivizumab, a recombinant monoclonal antibody to RSV, as prophylaxis against RSV infection.
Source: Regenstrief LOINC
LP39551-4 Respiratory syncytial virus RNA
The respiratory syncytial virus (RSV) is a member of the Paramyxoviridae family and is an enveloped pleomorphic virus. RSV is spread through contact with respiratory droplets, contact with the patient and contact with contaminated surfaces. The rate of transmission is affected by outside temperature, humidity and precipitation. RSV infection spreads faster when the temperature is low and the humidity is high in temperate zones and when rainfall levels are high in tropical climates. RSV causes severe lower respiratory infections in infants and young children. Infants born prematurely are particularly susceptible. Symptoms of RSV infection include cough, low-grade fever and rhinorrhea. High risk adult populations including patients in residential facilities, those with heart and lung diseases and immunocompromised patients are susceptible to severe RSV infection and significant morbidity.(Manual of Clinical Microbiology, 11th edition, James H. Jorgensen; Karen C. Carroll; Guido Funke; Michael A Pfaller; Marie Louise Landry; Sandra S. Richter; David W. Warnock)
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Respiratory syncytial virus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- RSV RNA Lower resp Ql NAA+probe
- Display Name
- RSV RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Respiratory syncytial virus (RSV), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.65
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 92880-4 | Human metapneumovirus and Respiratory syncytial virus RNA panel - Lower respiratory specimen by NAA with probe detection |
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34071-7 | Respiratory syncytial virus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Respiratorisches Synzytial-Virus RNA: |
| es-MX | Spanish (Mexico) | ARN del virus respiratorio sincitial: |
| es-ES | Spanish (Spain) | Virus respiratorio sincitial RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Virus respiratoire syncytial ARN: |
| it-IT | Italian (Italy) | Virus respiratorio sinciziale RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA VRS |
| nl-NL | Dutch (Netherlands) | respiratoir syncytieel virus RNA: Synonyms: onderste ademhalingsstelsel; |
91131-3 Rhinovirus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP17714-4 Rhinovirus
Human rhinoviruses (HRVs) can be categorized into three genetically distinct HRV groups, designated groups A, B, and C, within the genus Enterovirus and the family Picornaviridae. HRVs are positive-sense, single-stranded-RNA (ssRNA) viruses of approximately 7,200 bp. HRVs, which are the cause of more than one-half of cold like illnesses, are commonly associated with upper respiratory tract infection, otitis media, and sinusitis. PCR testing for respiratory virus detection has led to the recognition of HRV as a lower respiratory tract pathogen as well, especially in patients with asthma, infants, elderly patients, and immunocompromised individuals. At this time there are no approved antiviral therapies, and treatment is primarily supportive.
Source: Regenstrief LOINC, PMCID: PMC3553670
Fully-Specified Name
- Component
- Rhinovirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- Rhinovirus RNA Lower resp Ql NAA+probe
- Display Name
- Rhinovirus RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Rhinovirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.65
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG50139-1 | Rhinovirus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | ARN de rinovirus: |
| es-ES | Spanish (Spain) | Rinovirus RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Rhinovirus ARN: |
| it-IT | Italian (Italy) | Rhinovirus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | rinovirus RNA: Synonyms: onderste ademhalingsstelsel; |
92885-3 Rhinovirus+Enterovirus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP35705-0 Rhinovirus+Enterovirus
Human rhinoviruses (HRVs) can be categorized into three genetically distinct HRV groups, designated groups A, B, and C, within the genus Enterovirus and the family Picornaviridae. HRVs are positive-sense, single-stranded-RNA (ssRNA) viruses of approximately 7,200 bp. HRVs, which are the cause of more than one-half of cold like illnesses, are commonly associated with upper respiratory tract infection, otitis media, and sinusitis. PCR testing for respiratory virus detection has led to the recognition of HRV as a lower respiratory tract pathogen as well, especially in patients with asthma, infants, elderly patients, and immunocompromised individuals. At this time there are no approved antiviral therapies, and treatment is primarily supportive.
Source: Regenstrief LOINC, PMCID: PMC3553670
LP35705-0 Rhinovirus+Enterovirus
Enteroviruses are small, non-enveloped, single stranded RNA viruses in the picornavirus family and include coxsackievirus, rhinovirus, echovirus, and poliovirus species. They are the most common viral pathogen worldwide, and clinical manifestations range from mild, cold-like symptoms to severe infections, including encephalitis, aseptic (viral) meningitis, and myocarditis. Enterovirus infection has also been associated with the onset of type I diabetes mellitus. PMID: 23764548
Source: Regenstrief LOINC, PMID: 23764548
Fully-Specified Name
- Component
- Rhinovirus+Enterovirus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- RV+EV RNA Lower resp Ql NAA+probe
- Display Name
- Rhinovirus+Enterovirus RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Rhinovirus+Enterovirus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL2021-5
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG34139-2 | Rhinovirus+Enterovirus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-MX | Spanish (Mexico) | Rinovirus + ARN de enterovirus: |
| es-ES | Spanish (Spain) | Rinovirus+Enterovirus RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Rhinovirus+Entérovirus ARN: |
| it-IT | Italian (Italy) | Rhinovirus+Enterovirus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | rinovirus + enterovirus RNA: Synonyms: onderste ademhalingsstelsel; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
91823-5 Rubella virus RNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14416-9 Rubella virus
Rubella (also known as epidemic roseola, German measles, liberty measles or three-day measles) is a disease caused by the Rubella virus. It is often a mild illness, with symptoms of sore throat, low-grade fever, and a rash on the body. The virus usually enters the body through the nose or throat. Like most viruses living along the respiratory tract, it is transmitted from person to person by tiny droplets that are inhaled. Rubella can pose a serious risk if transmitted from a mother to her developing baby if a woman is infected while she is pregnant, especially during the first trimester. The baby is at risk for having congenital rubella syndrome (CRS). The most common symptoms of CRS include heart defects, deafness, cataracts, intellectual disabilities, and liver or spleen damage.[CDC: Rubella]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Rubella virus RNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- RUBV RNA Lower resp Ql NAA+probe
- Display Name
- Rubella virus RNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Rubella virus, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.66
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32766-4 | Rubella virus |
| LG50863-6 | Rubella virus RNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Röteln-Virus RNA: |
| es-MX | Spanish (Mexico) | ARN del virus de la rubéola: |
| es-ES | Spanish (Spain) | Virus de la Rubeola RNA: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Rubéole virus ARN: |
| it-IT | Italian (Italy) | Rosolia virus RNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus della rosolia |
| nl-NL | Dutch (Netherlands) | Rubellavirus RNA: Synonyms: onderste ademhalingsstelsel; |
96120-1 SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP417598-2 SARS coronavirus 2 RdRp gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance]
Source: Regenstrief LOINC
Reference Information
| Type | Source | Reference |
|---|---|---|
| Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
Fully-Specified Name
- Component
- SARS coronavirus 2 RdRp gene
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- SARS-CoV-2 RdRp Lower resp Ql NAA+probe
- Display Name
- SARS-CoV-2 (COVID-19) RdRp gene NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- SARS-CoV-2 (COVID-19) RdRp gene, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.69
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL2021-5
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG51047-5 | SARS coronavirus 2 RdRp gene| |
| LG51017-8 | SARSCoV2 detection |
| LG51019-4 | SARSCoV2 molecular detection |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-AT | German (Austria) | Synonyms: SARS-CoV-2 RdRP-Gen ql. /BAL PCR |
| de-DE | German (Germany) | SARS-Coronavirus 2 RdRp-Gen: |
| es-ES | Spanish (Spain) | Gen RdRp de SARS-CoV-2 (COVID-19): Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| es-MX | Spanish (Mexico) | Gen RdRp del coronavirus 2 del SARS: |
| fr-FR | French (France) | Coronavirus SARS-CoV-2 gène RdRp: |
| it-IT | Italian (Italy) | SARS coronavirus 2, gene RdRp: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Coronavirus della SARS Gene RdRp di SARS-CoV-2 (COVID-19) Microbiologia Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | SARS-CoV-2 RdRp-gen: Synonyms: onderste ademhalingsstelsel; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
96121-9 SARS-related coronavirus E gene [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP417600-6 SARS-related coronavirus E gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance]
Source: Regenstrief LOINC
Reference Information
| Type | Source | Reference |
|---|---|---|
| Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
| Mapping Guidance | LOINC | Take caution when mapping LOINC codes to molecular tests for SARS coronaviruses that target nucleic acids within the E gene. Such assays detect either SARS-related coronavirus or SARS-CoV-2, depending on the targeted region within the E gene. Assays that are non-specific to only SARS-CoV-2 may say they are "positive" for SARS-CoV-2, but only because it is the primary circulating virus during the pandemic. These assays actually detect any SARS-related coronaviruses since they target a region in the E gene that contains sequence homology to other known coronaviruses. Other assays target a region in the E gene that is specific for SARS-CoV-2. The LIVD file contains current LOINC code mappings to many IVD tests [https://www.cdc.gov/csels/dls/sars-cov-2-livd-codes.html]. You may also contact the manufacturer directly to verify LOINC code mappings. |
Fully-Specified Name
- Component
- SARS-related coronavirus E gene
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- SARS-rel CoV E gene Low resp Ql NAA+prb
- Display Name
- SARS-related coronavirus E gene NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- SARS-related coronavirus E gene, Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.69
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL2021-5
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG50982-4 | SARS-related coronavirus |
| LG51048-3 | SARS-related coronavirus E gene| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-AT | German (Austria) | Synonyms: SARS-CoV-2 E-Gen ql. /BAL PCR |
| de-DE | German (Germany) | SARS-bezogenes Coronavirus E-Gen: |
| es-ES | Spanish (Spain) | Gen del coronavirus E relacionado con el SARS: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| es-MX | Spanish (Mexico) | Gen del coronavirus E relacionado con el SARS: |
| fr-FR | French (France) | Coronavirus SARS apparentés gène E: |
| it-IT | Italian (Italy) | Coronavirus correlato a SARS, gene E: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Gene E di coronavirus correlato a SARS Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
| nl-NL | Dutch (Netherlands) | SARS-gerelateerd coronavirus E-gen: Synonyms: onderste ademhalingsstelsel; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
88565-7 Varicella zoster virus DNA [Presence] in Lower respiratory specimen by NAA with probe detection
Part Descriptions
LP14853-3 Varicella zoster virus
Varicella zoster virus (VZV) is a double-stranded alphaherpesvirus that causes seasonal outbreaks of chickenpox and shingles in non-immunized populations. VZV is highly infectious and is transmitted by contact with the ruptured fluid filled blisters and respiratory secretions of infected individuals. Immunity post infection is usually lifelong though the latent virus inhabits the sensory nerve ganglia where it can reactivate causing shingles when immunity declines with aging.[http://jvi.asm.org/content/88/24/13936.full] In the over fifty strains of VZV that have been sequenced it has been found that a single nucleotide polymorphism occurs about every 100 bases. The patterns of polymorphisms in VZV correlate with different geographical regions of infection and is the basis for the classification of viral clades.[https://grose.lab.uiowa.edu/vzv-genomes-and-evolution] Breuer proposed the nomenclature for the VZV clades as 1-5 with the suspected clades VI and VII to be confirmed later. The geographical regions associated with the seven clades are as follows:
Clades 1 and 3-represent the dominant clades of the circulating VZV in Europe and the Americas
Clades 4 and 5-found in Africa
Clade VI found in France, Italy
Clade VII exclusively isolated in the US
Clade 2-Asia from Korea, Japan, China not found in India, Nepal and Bangladesh where clades 4 and 5 were dominant
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054591/
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Varicella zoster virus DNA
- Property
- PrThr
- Time
- Pt
- System
- Respiratory system specimen.lower
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- VZV DNA Lower resp Ql NAA+probe
- Display Name
- VZV DNA NAA+probe Ql (Lower resp)
- Consumer Name Alpha Get Info
- Varicella zoster virus (VZV; Chickenpox), Lower respiratory
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.64
- Last Updated
- Version 2.77
- Change Reason
- Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
- Order vs. Observation
- Both
Example Answer List LL744-4
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Detected | LA11882-0 | ||
| Not detected | LA11883-8 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 94393-6 | Respiratory pathogens DNA and RNA panel - Lower respiratory specimen by NAA with probe detection |
Member of these Groups Get Info
| LOINC Group | Group Name |
|---|---|
| LG32750-8 | Varicella zoster virus |
| LG50851-1 | Varicella zoster virus DNA| |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| de-DE | German (Germany) | Varicella-Zoster-Virus DNA: Synonyms: Human alphaherpesvirus 3; |
| es-MX | Spanish (Mexico) | ADN del virus de la varicela zóster: |
| es-ES | Spanish (Spain) | Virus Varicella zoster ADN: Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio |
| fr-FR | French (France) | Varicelle zona virus ADN: |
| it-IT | Italian (Italy) | Varicella zoster, virus DNA: Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio inferiore Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus della varicella zoster |
| nl-NL | Dutch (Netherlands) | varicella-zostervirus DNA: Synonyms: onderste ademhalingsstelsel; |