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Term Description

Qualitative results for the detection of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with non-probe based detection, such as melt curve analysis or MALDI-TOF mass spectrometry. Results may be based on multiple assays to determine the presence of the virus in a specimen. Testing is performed for the diagnosis of Coronavirus Disease 2019 (COVID-19).

Part Description

LP417540-4   SARS coronavirus 2
The 2019 Novel Coronavirus (2019-nCoV) is a coronavirus first identified as the cause of a respiratory illness outbreak in Wuhan, China. Initially, the outbreak was linked to a large seafood and animal market and thought to only be spread by animal to person contact. Within a short time, a growing number of patients who had not been exposed to animal markets were diagnosed with the infection, indicating person-to-person transmission. As of January 2020, infections with 2019-nCoV had been reported internationally due to confirmed cases in travelers from Wuhan. Overall, clinical symptoms appear milder than SARS Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome (MERS) Coronavirus (MERS-CoV) infections as do the fatality rate and transmissibility. PMID: 31953166 Reported illnesses range from minor or no respiratory symptoms to severe acute respiratory illness and death.

The full genome of the 2019-nCoV was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Source: LOINC

LOINC Names Get Info

Fully-Specified Name
SARS coronavirus 2 RNA:PrThr:Pt:Respiratory System Specimen:Ord:Non-probe.amp.tar
Long Common Name
SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with non-probe detection
Short Name
SARS-CoV-2 RNA Resp Ql NAA+n-prb
Display Name
SARS-CoV-2 (COVID-19) RNA NAA+non-probe Ql (Respiratory system specimen)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19), Respiratory system specimen

Part Model Get Info

  • Component
    SARS coronavirus 2 RNA
    LP417541-2
    • Analyte
      SARS coronavirus 2 RNA
      LP417541-2
      • Component Numerator
        SARS coronavirus 2 RNA
        LP417541-2
        • Component Numerator Core
          SARS coronavirus 2
          LP417540-4
        • Component Numerator Core Suffix
          RNA
          LP32423-3
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    Respiratory System Specimen
    LP436142-6
    • System Core
      Respiratory System Specimen
      LP436142-6
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Non-probe.amp.tar
    LP208998-7

Example Answer List: LL5508-8

Source: Centers for Disease Control and Prevention
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8
InconclusiveCopyright http://snomed.info/sct ID:419984006 Inconclusive (qualifier value)LA9663-1
InvalidCopyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value)LA15841-2

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.69
Last Updated
Version 2.82 (MIN)
Change Reason
Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;
Order vs. Observation
Both

Member of these Groups Get Info

LOINC GroupGroup Name
LG50983-2SARS coronavirus 2 RNA|PrThr|Sys:ANYResp
LG51017-8SARSCoV2 detection
LG51019-4SARSCoV2 molecular detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)SARS-CoV-2 (COVID-19) RNA:Přítomnost nebo práh:Časový bod:Vzorek z dýchacích cest:Ordinální:Amplifikace nukleových kyselin s detekcí bez sondy
de-DEGerman (Germany)SARS-Coronavirus 2 RNA:Nachweis oder Schwellenwert:Zeitpunkt:Probenmaterial vom Respirationstrakt:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
el-GRGreek (Greece)Κορωνοϊός SARS 2 RNA:PrThr:Pt:Δείγμα αναπνευστικού συστήματος:Ord:Χωρίς ανιχνευτή.ενίσχυση.στόχου
Synonyms: MICRO Ord PrThr Pt RNA Αναπνευστικό Αναπνευστικό σύστημα Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Δείγμα Δείγμα αναπνευστικού συστήματος Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2 Χωρίς ανιχνευτή.ενίσχυση.στόχου
es-ESSpanish (Spain)Panel del SARS-CoV-2 (COVID-19) RNA:PrThr:Punto temporal:Muestra del sistema respiratorio:Ord:Amplificación del objetivo no basado en sonda
Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio
es-MXSpanish (Mexico)ARN del coronavirus 2 del SARS:Presencia o umbral:Punto temporal:Espécimen respiratorio:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FRFrench (France)Coronavirus SARS-CoV-2 ARN:Présence/Seuil:Ponctuel:Échantillon du système respiratoire:Qualitatif:Non-PCR amplification de cible
fr-CAFrench (Canada)coronavirus 2 du SRAS ARN:Présence-Seuil:Temps ponctuel:Échantillon du système respiratoire:Ordinal:Non-sonde.amplification de cible
it-ITItalian (Italy)SARS coronavirus 2 RNA:PrThr:Pt:Campione da Sistema Respiratorio:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Campione da Apparato Respiratorio Coronavirus della SARS Microbiologia Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
pl-PLPolish (Poland)SARS-CoV-2 RNA:granica wykrywalności:punkt w czasie:próbka z układu oddechowego:uporządkowany:bez sondy.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Koronawirus
zh-CNChinese (China)SARS 冠状病毒 2 RNA:存在情况或阈值:时间点:呼吸系统标本:序数型:非探针法.基因扩增.靶向
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 供检查用的材料;待检物;待试验物;样品;样本;试料;试样 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 受检物 呼吸道标本（样品、样本）;呼吸系统标本（样品、样本） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 样品 样本 核糖核酸;Ribonucleic acid 经过扩增的 脱氧核糖核酸探针 试样

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=95608-6