96897-4
SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection
Active
96797-6 SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection
Term Description
Qualitative detection of nucleic acid from the SARS coronavirus 2 (SARS-CoV-2) in oropharyngeal wash (oral rinse, gargle) samples by nucleic acid amplification (NAA) with probe-based detection methods. Testing is performed for the diagnosis of COVID-19.
Source: Regenstrief LOINC
Part Descriptions
LP417540-4 SARS coronavirus 2
The 2019 Novel Coronavirus (2019-nCoV) is a coronavirus first identified as the cause of a respiratory illness outbreak in Wuhan, China. Initially, the outbreak was linked to a large seafood and animal market and thought to only be spread by animal to person contact. Within a short time, a growing number of patients who had not been exposed to animal markets were diagnosed with the infection, indicating person-to-person transmission. As of January 2020, infections with 2019-nCoV had been reported internationally due to confirmed cases in travelers from Wuhan. Overall, clinical symptoms appear milder than SARS Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome (MERS) Coronavirus (MERS-CoV) infections as do the fatality rate and transmissibility. PMID: 31953166 Reported illnesses range from minor or no respiratory symptoms to severe acute respiratory illness and death.
The full genome of the 2019-nCoV was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus.
Source: LOINC
LP422509-2 Oropharyngeal wash
Oropharyngeal wash, also known as gargle, oral rinse or throat wash, includes a sampling of the entire oral cavity, including the oropharyngeal, nasopharynx, tongue, saliva, larynx and oral mucosa. The gargle sample collection method involves a patient gargling a sterile saline solution and spitting it into a collection tube. The sample may be used for the molecular detection of various respiratory infections, including SARS coronavirus 2 (COVID-19).
Source: LOINC
Reference Information
Type | Source | Reference |
---|---|---|
Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
Fully-Specified Name
- Component
- SARS coronavirus 2 RNA
- Property
- PrThr
- Time
- Pt
- System
- Oropharyngeal wash
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Panel Name
- Short Name
- SARS-CoV-2 RNA OPA wash Ql NAA+probe
- Display Name
- SARS-CoV-2 (COVID-19) RNA NAA+probe Ql (Oropharyngeal wash)
- Consumer Name Alpha Get Info
- SARS-CoV-2 (COVID-19), Oropharyngeal wash
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.70
- Order vs. Observation
- Both
Example Answer List LL2021-5
Answer | Code | Score | Answer ID |
---|---|---|---|
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 |
Member of these Panels
LOINC | Long Common Name |
---|---|
96897-4 | SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection |
Member of these Groups Get Info
LOINC Group | Group Name |
---|---|
LG51017-8 | SARSCoV2 detection |
LG51019-4 | SARSCoV2 molecular detection |
Language Variants Get Info
Tag | Language | Translation |
---|---|---|
de-DE | German (Germany) | SARS-Coronavirus 2 RNA: |
es-MX | Spanish (Mexico) | ARN del coronavirus 2 del SARS: |
es-ES | Spanish (Spain) | Panel del SARS-CoV-2 (COVID-19) RNA: |
fr-FR | French (France) | Coronavirus SARS-CoV-2 ARN: |
it-IT | Italian (Italy) | SARS coronavirus 2 RNA: Synonyms: Coronavirus della SARS Microbiologia Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
nl-NL | Dutch (Netherlands) | SARS-CoV-2 RNA: Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; |
zh-CN | Chinese (China) | SARS 冠状病毒 2 RNA: Synonyms: 2019 新型冠状病毒; |
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.
Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.
96898-2 SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection
Term Description
Quantitative detection (Cq/Ct value) of nucleic acids within the nucleoprotein (N) gene from SARS coronavirus 2 (SARS-CoV-2) in oropharyngeal wash (oral rinse, gargle) samples by nucleic acid amplification (NAA) with probe-based detection methods.
Source: Regenstrief LOINC
Part Descriptions
LP417599-0 SARS coronavirus 2 N gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance]
Source: Regenstrief LOINC
LP422509-2 Oropharyngeal wash
Oropharyngeal wash, also known as gargle, oral rinse or throat wash, includes a sampling of the entire oral cavity, including the oropharyngeal, nasopharynx, tongue, saliva, larynx and oral mucosa. The gargle sample collection method involves a patient gargling a sterile saline solution and spitting it into a collection tube. The sample may be used for the molecular detection of various respiratory infections, including SARS coronavirus 2 (COVID-19).
Source: LOINC
Reference Information
Type | Source | Reference |
---|---|---|
Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
Fully-Specified Name
- Component
- SARS coronavirus 2 N gene
- Property
- ThreshNum
- Time
- Pt
- System
- Oropharyngeal wash
- Scale
- Qn
- Method
- Probe.amp.tar
Additional Names
- Panel Name
- Short Name
- SARS-CoV-2 N gene Ct OPA wash Qn NAA+prb
- Display Name
- SARS-CoV-2 (COVID-19) N gene NAA+probe (Oropharyngeal wash) [ThreshNum]
- Consumer Name Alpha Get Info
- SARS-CoV-2 (COVID-19) N gene, Oropharyngeal wash
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.70
- Order vs. Observation
- Observation
Member of these Panels
LOINC | Long Common Name |
---|---|
96897-4 | SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection |
Member of these Groups Get Info
LOINC Group | Group Name |
---|---|
LG51017-8 | SARSCoV2 detection |
LG51019-4 | SARSCoV2 molecular detection |
Language Variants Get Info
Tag | Language | Translation |
---|---|---|
de-DE | German (Germany) | SARS-Coronavirus 2 N-Gen: |
es-MX | Spanish (Mexico) | Gen del coronavirus 2 N del SARS: |
es-ES | Spanish (Spain) | Gen N de SARS-CoV-2 (COVID-19): Synonyms: Cuantitativo |
fr-FR | French (France) | Coronavirus SARS-CoV-2 gène N: |
it-IT | Italian (Italy) | SARS coronavirus 2, gene N: Synonyms: Coronavirus della SARS Gene N di SARS-CoV-2 (COVID-19) Limite di soglia Microbiologia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
nl-NL | Dutch (Netherlands) | SARS-CoV-2 N-gen: Synonyms: evere acute respiratory syndrome coronavirus 2; |
zh-CN | Chinese (China) | SARS 冠状病毒 2 N 基因: Synonyms: 2019 新型冠状病毒; |
Example Units
Unit | Source |
---|---|
{Ct_value} | Example UCUM Units |
96899-0 SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection
Term Description
Quantitative detection (Cq/Ct value) of nucleic acids within the Open Reading Frame 1ab (ORF1ab) region of SARS coronavirus 2 (SARS-CoV-2) in oropharyngeal wash (oral rinse, gargle) samples by nucleic acid amplification (NAA) with probe-based detection methods.
Source: Regenstrief LOINC
Part Descriptions
LP422509-2 Oropharyngeal wash
Oropharyngeal wash, also known as gargle, oral rinse or throat wash, includes a sampling of the entire oral cavity, including the oropharyngeal, nasopharynx, tongue, saliva, larynx and oral mucosa. The gargle sample collection method involves a patient gargling a sterile saline solution and spitting it into a collection tube. The sample may be used for the molecular detection of various respiratory infections, including SARS coronavirus 2 (COVID-19).
Source: LOINC
Reference Information
Type | Source | Reference |
---|---|---|
Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
Fully-Specified Name
- Component
- SARS coronavirus 2 ORF1ab region
- Property
- ThreshNum
- Time
- Pt
- System
- Oropharyngeal wash
- Scale
- Qn
- Method
- Probe.amp.tar
Additional Names
- Panel Name
- Short Name
- SARS-CoV-2 ORF1ab Ct OPA wash Qn NAA+prb
- Display Name
- SARS-CoV-2 (COVID-19) ORF1ab region NAA+probe (Oropharyngeal wash) [ThreshNum]
- Consumer Name Alpha Get Info
- SARS-CoV-2 (COVID-19) ORF1ab region, Oropharyngeal wash
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.70
- Order vs. Observation
- Observation
Member of these Panels
LOINC | Long Common Name |
---|---|
96897-4 | SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection |
Member of these Groups Get Info
LOINC Group | Group Name |
---|---|
LG51017-8 | SARSCoV2 detection |
LG51019-4 | SARSCoV2 molecular detection |
Language Variants Get Info
Tag | Language | Translation |
---|---|---|
de-DE | German (Germany) | SARS-Coronavirus 2 ORF1ab-Region: |
es-MX | Spanish (Mexico) | Región ORF1ab del coronavirus 2 del SARS: |
es-ES | Spanish (Spain) | Región ORF1ab del SARS-CoV-2 (COVID-19): Synonyms: Cuantitativo |
fr-FR | French (France) | Coronavirus SARS-CoV-2 région ORF1ab: |
it-IT | Italian (Italy) | SARS coronavirus 2, regione ORF1ab: Synonyms: Coronavirus della SARS Limite di soglia Microbiologia Punto nel tempo (episodio) Regione ORF1ab di SARS-CoV-2 (COVID-19) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
nl-NL | Dutch (Netherlands) | SARS-CoV-2 ORF1ab-regio: Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; |
zh-CN | Chinese (China) | SARS 冠状病毒 2 ORF1ab 区域: Synonyms: 2019 新型冠状病毒; |
Example Units
Unit | Source |
---|---|
{Ct_value} | Example UCUM Units |
96900-6 SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection
Term Description
Quantitative detection (Cq/Ct value) of nucleic acids within the spike (S) gene of SARS coronavirus 2 (SARS-CoV-2) in oropharyngeal wash (oral rinse, gargle) samples by nucleic acid amplification (NAA) with probe-based detection methods.
Source: Regenstrief LOINC
Part Descriptions
LP418046-1 SARS coronavirus 2 S gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance]
Source: Regenstrief LOINC
LP422509-2 Oropharyngeal wash
Oropharyngeal wash, also known as gargle, oral rinse or throat wash, includes a sampling of the entire oral cavity, including the oropharyngeal, nasopharynx, tongue, saliva, larynx and oral mucosa. The gargle sample collection method involves a patient gargling a sterile saline solution and spitting it into a collection tube. The sample may be used for the molecular detection of various respiratory infections, including SARS coronavirus 2 (COVID-19).
Source: LOINC
Reference Information
Type | Source | Reference |
---|---|---|
Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
Fully-Specified Name
- Component
- SARS coronavirus 2 S gene
- Property
- ThreshNum
- Time
- Pt
- System
- Oropharyngeal wash
- Scale
- Qn
- Method
- Probe.amp.tar
Additional Names
- Panel Name
- Short Name
- SARS-CoV-2 S gene Ct OPA wash Qn NAA+prb
- Display Name
- SARS-CoV-2 (COVID-19) S gene NAA+probe (Oropharyngeal wash) [ThreshNum]
- Consumer Name Alpha Get Info
- SARS-CoV-2 (COVID-19) S gene, Oropharyngeal wash
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.70
- Last Updated
- Version 2.70
- Order vs. Observation
- Observation
Member of these Panels
LOINC | Long Common Name |
---|---|
96897-4 | SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection |
Member of these Groups Get Info
LOINC Group | Group Name |
---|---|
LG51017-8 | SARSCoV2 detection |
LG51019-4 | SARSCoV2 molecular detection |
Language Variants Get Info
Tag | Language | Translation |
---|---|---|
de-DE | German (Germany) | SARS-Coronavirus 2 S-Gen: |
es-ES | Spanish (Spain) | Gen S de SARS-CoV-2 (COVID-19): Synonyms: Cuantitativo |
es-MX | Spanish (Mexico) | Gen del coronavirus 2 S del SARS: |
fr-FR | French (France) | Coronavirus SARS-CoV-2 gène S: |
it-IT | Italian (Italy) | SARS-CoV-2 (COVID-19), gene S: Synonyms: Coronavirus della SARS Gene S di SARS-CoV-2 (COVID-19) Limite di soglia Microbiologia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA |
nl-NL | Dutch (Netherlands) | SARS-CoV-2 S-gen: Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; |
zh-CN | Chinese (China) | SARS 冠状病毒 2 S 基因: Synonyms: 2019 新型冠状病毒; |
Example Units
Unit | Source |
---|---|
{Ct_value} | Example UCUM Units |