101527-0
Porcine epidemic diarrhea virus S1 gene [Identifier] in Isolate by Sequencing
Active
Part Descriptions
LP150045-5 Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600
Source: Regenstrief LOINC
LP263475-8 Porcine epidemic diarrhea virus S1 gene
Veterinary Medicine:
Porcine epidemic diarrhea virus (PEDV) is an enveloped, positive-stranded RNA virus belonging to the Coronaviridae family of viruses. It is an extremely contagious enteric pathogen of pigs and causes porcine epidemic diarrhea (PED). Symptoms of PED include watery diarrhea in pigs that are a few weeks old, dehydration, vomiting, and anorexia. PED has a high morbidity and mortality rate in young piglets. PEDV was first identified in Belgium in 1978, but has caused serious outbreaks since then in Asian pig farming countries including China. Significant outbreaks of PEDV have also occurred in the United States, Canada, Taiwan and Europe. The spike or S protein is one of seven proteins encoded by the 28 kB and resides on the outer surface of the virion. There are two subunits of the S protein which are the N-terminal subunit S1 and the C-terminal subunit S2. These two subunits must be cleaved in order for the virus to attach and enter the host cell. The functional receptor for PEDV has been identified as porcine aminopeptidase N. There are no vaccines currently available on the market. PMID: 27036203
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- Porcine epidemic diarrhea virus S1 gene
- Property
- Prid
- Time
- Pt
- System
- Isolate
- Scale
- Nom
- Method
- Sequencing
Additional Names
- Short Name
- PEDV S1 gene Islt Seq
- Display Name
- PEDV S1 gene Sequencing Nom (Isol)
- Consumer Name Alpha Get Info
- PEDV S1 gene
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.74
- Last Updated
- Version 2.75
- Order vs. Observation
- Both
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| es-ES | Spanish (Spain) | Gen S1 virus diarrea epidémica porcina: |
| it-IT | Italian (Italy) | Virus della diarrea epidemica suina, gene S1: Synonyms: Gene S1 di virus PED Microbiologia Presenza o Identità Punto nel tempo (episodio) Virus PED |
| nl-NL | Dutch (Netherlands) | 'porcine' epizoötisch diarreevirus S1-gen: Synonyms: epizoötisch diarreevirus van varken porcine |
| pl-PL | Polish (Poland) | Wirus epidemicznej biegunki świń gen S1: |
| zh-CN | Chinese (China) | 猪流行性腹泻病毒 S1 基因: Synonyms: PEDV S1 基因 下痢; |
LOINC Terminology Service (API) using HL7® FHIR® Get Info
Requests to this service require a free LOINC username and password. Below is a sample of the possible capabilities. See the LOINC Terminology Service documentation for more information.
- CodeSystem lookup
- https:
//fhir.loinc.org/CodeSystem/$lookup?system=http: //loinc.org&code=101527-0
LOINC Copyright
Copyright © 2024 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright