Version 2.78

Term Description

Percent genomic homology between a new isolated PRRS virus strain and a PPRS vaccine strain is based on the number of matching amino acids per total amino acids sequenced in the open reading frame 5 (ORF5) gene. The more homologous the ORF5 gene sequences, the more closely the variants are related.
Source: Regenstrief LOINC

Part Description

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

Fully-Specified Name

Component
Porcine reproductive and respiratory syndrome virus ORF5 gene sequence homology to RespPRRS
Property
NFr
Time
Pt
System
Isolate
Scale
Qn
Method
Sequencing

Additional Names

Short Name
PRRSV RespPRRS Hmlgy Islt Seq-NFr
Display Name
PRRSV ORF5 gene sequence homology to RespPRRS sequencing Sequencing (Isol)
Consumer Name Alpha Get Info
PRRSV ORF5 gene sequence homology to RespPRRS

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.74
Last Updated
Version 2.75
Order vs. Observation
Both

Language Variants Get Info

Tag Language Translation
es-ES Spanish (Spain) Homología de la secuencia del gen ORF5 del virus del síndrome reproductivo y respiratorio porcino con RespPRRS:Fracción numérica:Punto temporal:Aislado:Qn:Secuenciación
Synonyms: Cuantitativo
fr-FR French (France) Virus du syndrome dysgénésique et respiratoire porcin homologie de séquence entre les gènes ORF5 et RespPRRS:Fraction de nombres:Ponctuel:Isolat:Numérique:Séquençage
it-IT Italian (Italy) Sindrome riproduttiva e respiratoria del suino, omologia della sequenza genica del virus ORF5 con RespPRRS:NFr:Pt:Isolato:Qn:Sequenziamento
Synonyms: Frazione numerica Gene ORF5 virus PRRS Microbiologia Omologia della sequenza genica del virus ORF5 con RespPRRS della sindrome riproduttiva e respiratoria del suino Punto nel tempo (episodio) Sequenziamento del gene ORF5 virus PRRS Virus PRRS
nl-NL Dutch (Netherlands) 'porcine' reproductief en respiratoir syndroomvirus ORF5-gensequentie homologie met RespPRRS:getalsfractie:moment:isolaat:kwantitatief:sequencing
Synonyms: porcine voortplantings- en respiratoir syndroom virus van varken; PRRSV
zh-CN Chinese (China) 猪繁殖与呼吸综合征病毒 ORF5 基因序列 RespPRRS 同源物:计数型分数:时间点:分离株:定量型:序列测定
Synonyms: Lelystad 病毒;PRRS;SIRSV;兰耳病;新猪病;母猪后期流产;猪不育和呼吸综合症;猪不育和呼吸综合症（Swine infertility and respiratory syndrome，SIRSV）;猪生殖与呼吸系统综合症;猪生殖与呼吸综合症（Porcine reproductive and respiratory syndrome，PRRS）;猪繁殖与呼吸综合征;猪蓝耳病;猪蓝色病;神秘仔猪病;神秘猪病;莱利斯塔猪病毒（Lelystad Virus，LV）;蓝耳猪病;蓝耳病;蓝色流产症 PRRSV;猪生殖呼吸综合征病毒;猪呼吸繁殖综合征病毒;猪繁殖与呼吸道综合征病毒;猪繁殖和呼吸障碍综合征;Porcine Reproductive and Respiratory Syndrome;PRRS;蓝耳病;Blue Ear Disease;可译框架;可读框;开放阅读框;开放读码框;开放读码框架;编码框;ORF;open reading frame 传染毒;传染毒素;滤过性病原体;病毒类;过滤性病原体 分离物;分离菌;分离菌株;隔离种群 可用数量表示的;定量性;数值型;数量型;连续数值型标尺 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 数量型分数;数量或计数型分数;数量型分数或计数型分数 时刻;随机;随意;瞬间 猪的 猪科 猪科的 猪繁殖与呼吸综合征病毒（Lelystad 病毒;PRRS;SIRSV;猪不育和呼吸综合征病毒;Swine infertility and respiratory syndrome virus;莱利斯塔猪病毒;Lelystad Virus;LV） ORF5 基因序列 RespPRRS 同源物 遗传基因;遗传因子;吉恩;生物基因

Example Units

Unit Source
% Example UCUM Units

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=101533-8