103202-8

Deprecated SARS-CoV-2 (COVID-19) RNA in Respiratory specimen by NAA with probe detection

Deprecated

Status Information

Status: DEPRECATED

Map-To	Long Common Name	Mapping Guidance
94531-1	SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection

Term Description

Qualitative detection of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection. Results may be based on multiple assays to determine the presence of the virus in a specimen.

Part Description

LP417540-4 SARS coronavirus 2
The 2019 Novel Coronavirus (2019-nCoV) is a coronavirus first identified as the cause of a respiratory illness outbreak in Wuhan, China. Initially, the outbreak was linked to a large seafood and animal market and thought to only be spread by animal to person contact. Within a short time, a growing number of patients who had not been exposed to animal markets were diagnosed with the infection, indicating person-to-person transmission. As of January 2020, infections with 2019-nCoV had been reported internationally due to confirmed cases in travelers from Wuhan. Overall, clinical symptoms appear milder than SARS Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome (MERS) Coronavirus (MERS-CoV) infections as do the fatality rate and transmissibility. PMID: 31953166 Reported illnesses range from minor or no respiratory symptoms to severe acute respiratory illness and death.

The full genome of the 2019-nCoV was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Source: LOINC

Panel Hierarchy

Details for each LOINC in Panel LHC-Forms

LOINC	Name	R/O/C	Example UCUM Units
103202-8	Deprecated SARS-CoV-2 (COVID-19) RNA in Respiratory specimen by NAA with probe detection
Indent94500-6	SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
Indent97104-4	SARS-CoV-2 (COVID-19) ORF1ab region [Units/volume] (viral load) in Upper respiratory specimen by NAA with probe detection		[IU]/mL
Indent31208-2	Specimen source identified	O
Indent72826-1	Race OMB.1997
Indent69490-1	Ethnicity OMB.1997

LOINC Names Get Info

Fully-Specified Name: SARS coronavirus 2 RNA:-:Pt:Respiratory:-:Probe.amp.tar
Long Common Name: Deprecated SARS-CoV-2 (COVID-19) RNA in Respiratory specimen by NAA with probe detection
Short Name: Deprecated SARS-CoV-2 RNA Resp NAA+probe
Display Name: SARS-CoV-2 (COVID-19) RNA NAA+probe (Resp)
Consumer Name Alpha Get Info: SARS-CoV-2 (COVID-19), Respiratory

Part Model Get Info

Component
SARS coronavirus 2 RNA
LP417541-2
- Analyte
  SARS coronavirus 2 RNA
  LP417541-2
  - Component Numerator
    SARS coronavirus 2 RNA
    LP417541-2
    - Component Numerator Core
      SARS coronavirus 2
      LP417540-4
    - Component Numerator Core Suffix
      RNA
      LP32423-3
  - Component Denominator
    NULL
    - Component Denominator Core
      NULL
    - Component Denominator Core Suffix
      NULL
- Challenge
  NULL
- Adjustment
  NULL
- Count
  NULL
Property
-
LP6769-6
Time
Pt
LP6960-1
- Time Core
  Pt
  LP6960-1
- Time Modifier
  NULL
System
Respiratory
LP208442-6
- System Core
  Respiratory
  LP208442-6
- Super System
  NULL
Scale
-
LP7747-1
Method
Probe.amp.tar
LP6464-4

Example Answer List: LL2021-5

Source: Gen-Probe

Answer	Code	Score	Answer ID
PositiveCopyright http://snomed.info/sct ID:10828004 Positive (qualifier value)			LA6576-8
NegativeCopyright http://snomed.info/sct ID:260385009 Negative (qualifier value)			LA6577-6
InvalidCopyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value)			LA15841-2

Basic Attributes

Class: PANEL.MICRO
Type: Laboratory
First Released: Version 2.75
Last Updated: Version 2.76 (DEL)
Order vs. Observation: Both
Panel Type: Panel

Member of these Groups Get Info

LOINC Group	Group Name
LG51017-8	SARSCoV2 detection
LG51019-4	SARSCoV2 molecular detection

Language Variants Get Info

Tag	Language	Translation
cs-CZ	Czech (Czechia)	SARS-CoV-2 (COVID-19) RNA:-:Časový bod:Vzorek z dýchacích cest:-:Amplifikace nukleových kyselin s detekcí sondou
el-GR	Greek (Greece)	Κορωνοϊός SARS 2 RNA:-:Pt:Αναπνευστικό:-:Ανιχνευτής.ενίσχυση.στόχου Synonyms: - MICRO PANEL.MICRO Pt RNA Αναπνευστικό Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2
es-ES	Spanish (Spain)	Panel del SARS-CoV-2 (COVID-19) RNA:Propiedades mixtas (sólo paneles):Punto temporal:Respiratorio:-:Sonda con amplificación dirigida Synonyms: Muestra respiratoria
fr-CA	French (Canada)	coronavirus 2 du SRAS ARN:-:Temps ponctuel:Respiratoire:-:Sonde avec amplification de la cible
fr-FR	French (France)	Coronavirus SARS-CoV-2 ARN:-:Ponctuel:Respiratoire:-:PCR amplification de cible
it-IT	Italian (Italy)	SARS coronavirus 2 RNA:-:Pt:Respiratorio:-:Sonda.amp.tar Synonyms: Coronavirus della SARS Microbiologia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Set di prescrizione microbiologia Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL	Dutch (Netherlands)	SARS-CoV-2 RNA:-:moment:luchtwegen:-:probe-detectie Synonyms: probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19 systema respiratorium; ademhalingsstelsel
pl-PL	Polish (Poland)	SARS-CoV-2 RNA:-:punkt w czasie:próbka z dróg oddechowych:-:sonda.amplifikacja.cel Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Koronawirus
zh-CN	Chinese (China)	SARS 冠状病毒 2 RNA:-:时间点:呼吸道:-:探针法.基因扩增.靶向 Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒借助扩增的探针方法;借助扩增的探针法;探针法.扩增借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向医嘱套餐医嘱套餐类医嘱套餐组医嘱组医嘱组.微生物学;实验室组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目）类.微生物学试验;医嘱组.微生物学试验;医嘱组类.微生物学;医嘱组类.微生物学试验;实验室医嘱组类.微生物学;微生物学医嘱组;微生物学医嘱组类医嘱组合医嘱组合类医嘱组套医嘱组套类医嘱组类呼吸道标本（样品、样本）;呼吸系统标本（样品、样本）多重;多重型;多重标尺类型;多重精度类型套餐套餐医嘱套餐医嘱组套餐医嘱组类实验室医嘱套餐实验室医嘱套餐类实验室医嘱组实验室医嘱组合类实验室医嘱组套实验室医嘱组套类实验室套餐医嘱组实验室套餐医嘱组类实验室检验项目医嘱组合类实验室检验项目组合类微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）扩增型扩增性时刻;随机;随意;瞬间核糖核酸;Ribonucleic acid 检验医嘱组合类检验项目医嘱组合类检验项目组合类组组合组合医嘱组合类组套经过扩增的脱氧核糖核酸探针

LOINC Terminology Service (API) using HL7^® FHIR^® Get Info

CodeSystem lookup: https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=103202-8
Questionnaire definition: https://fhir.loinc.org/Questionnaire/?url=http://loinc.org/q/103202-8

Third Party Copyright

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LOINC Copyright

Copyright © Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.