Log In

Part Descriptions

LP133422-8   Streptococcus pyogenes M protein (emm) gene
The emm gene, defined here as the Streptococcus pyogenes gene amplified with primers 1 and 2, encodes the cell surface M virulence protein putatively responsible for at least 100 known M serospecificities of S. pyogenes. Source: Centers for Disease Control and Prevention, CDC

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Streptococcus pyogenes M protein (emm) gene:Type:Pt:Isolate:Nom:Sequencing
Long Common Name
Streptococcus pyogenes M protein emm gene [Type] in Isolate by Sequencing
Short Name
St pyo emm gene Islt Seq
Display Name
S. pyogenes M protein emm gene Sequencing Nom (Isol)
Consumer Name Alpha Get Info
Streptococcus pyogenes M protein (emm) gene

Part Model Get Info

  • Component
    Streptococcus pyogenes M protein (emm) gene
    LP133422-8
    • Analyte
      Streptococcus pyogenes M protein (emm) gene
      LP133422-8
      • Component Numerator
        Streptococcus pyogenes M protein (emm) gene
        LP133422-8
        • Component Numerator Core
          Streptococcus pyogenes M protein (emm) gene
          LP133422-8
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Type
    LP6886-8
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Example Answer List: LL1734-4

Source: Hong Kong Hospital Authority
AnswerCodeScoreAnswer ID
12LA14558-3
14LA14560-9

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.38
Last Updated
Version 2.65 (MIN)
Change Reason
Changed method from Amplification/Sequencing because Amplification always occurs before sequencing
Order vs. Observation
Both

Member of these Groups Get Info

LOINC GroupGroup Name
LG41610-3Streptococcus pyogenes

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Streptococcus pyogenes M protein gen emm:Typ:Časový bod:Izolát:Nominální:Sekvenace
de-DEGerman (Germany)Streptococcus pyogenes M-Protein (emm)-Gen:Typ:Zeitpunkt:Isolat:Nominal:Sequenzierung
el-GRGreek (Greece)Γονίδιο πρωτεΐνης Μ του βακτηρίου Streptococcus pyogenes (Στρεπτόκοκκος):Type:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: M MICRO Nom Pt Type Αλληλούχιση Απομονωμένο στέλεχος Βακτήριο Streptococcus pyogenes (Στρεπτόκοκκος) Γονίδιο Γονίδιο πρωτεΐνης Μ του βακτηρίου Streptococcus pyogenes (Στρεπτόκοκκος) Πρωτεΐνη
es-ESSpanish (Spain)Gen de la proteina M de Streptococcus pyogenes (emm):Tipo:Punto temporal:Aislado:Nom:Secuenciación
es-MXSpanish (Mexico)Gen de la proteína M de Streptococo pyogenes (emm):Tipo:Punto temporal:Aislado:Nominal:Secuenciación
fr-FRFrench (France)Streptococcus pyogenes protéine M gène EMM:Type:Ponctuel:Isolat:Résultat nominal:Séquençage
it-ITItalian (Italy)Streptococcus pyogenes, gene (emm) proteina M:Tipo:Pt:Isolato:Nom:Sequenziamento
Synonyms: Gene (emm) proteina M di Streptococcus pyogenes Microbiologia Punto nel tempo (episodio)
nl-NLDutch (Netherlands)Streptococcus pyogenes M eiwit (emm) gen:type:moment:isolaat:nominaal:sequencing
pl-PLPolish (Poland)Streptococcus pyogenes białko M (emm) gen:typ:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: Gen emm kodujący białko M Streptococcus pyogenes Paciorkowiec ropotwórczy grupy A;GAS wynik kategorialny
tr-TRTurkish (Turkey)Streptococcus pyogenes M protein (emm) geni:Tip:Zmlı:İzolat:Snf:Sekanslama
Synonyms: Dizi tayini Tür
zh-CNChinese (China)化脓性链球菌 M 蛋白 (emm) 基因:类型:时间点:分离株:名义型:序列测定
Synonyms: A 族链球菌 M 蛋白 (emm) 基因;A 组链球菌 M 蛋白 (emm) 基因;A 群链球菌 M 蛋白 (emm) 基因;产脓链球菌 M 蛋白 (emm) 基因;酿脓链球菌 M 蛋白 (emm) 基因;化脓性链球菌 M 蛋白基因 A 族链球菌;A 组链球菌;Group A Streptococcus;GAS;A 群链球菌;GAS;产脓链球菌;酿脓链球菌 M 型 PR;Prot;成分 - 化学 - 蛋白质类;蛋白;朊;蛋白质类;蛋白质类物质 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 型 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=67569-4