Term Description

FISH studies are performed to detect a deletion on the short arm of chromosome 4 (4p16.3) in patients, primarily newborns, suspected of having Wolf-Hirschhorn syndrome (WHS). FISH signal pattern indicating a loss of 4p16.3 is consistent with a diagnosis of WHS.

Part Descriptions

LP172692-8   4p16.3 chromosome
Wolf-Hirschhorn syndrome is caused by a deletion of the short (p) arm of chromosome 4 (4p-). The size of the deletion varies among affected individuals with larger deletions tending to result in more severe intellectual disability and physical abnormalities than smaller deletions. The signs and symptoms of Wolf-Hirschhorn are related to the loss of multiple genes on the short arm of chromosome 4, including WHSC1, LETM1, and MSX1. Researchers believe that loss of the WHSC1 gene is associated with many of the characteristic features of Wolf-Hirschhorn syndrome, including the distinctive facial appearance and developmental delay. Deletion of the LETM1 gene appears to be associated with seizures or other abnormal electrical activity in the brain. A loss of the MSX1 gene may be responsible for the dental abnormalities and cleft lip and/or palate that are often seen with this condition. Between 85 and 90 percent of all cases of Wolf-Hirschhorn syndrome are not inherited. In the remaining cases, an affected individual inherits a copy of 4p- a parent who carries a balanced chromosomal rearrangement between chromosome 4 and another chromosome. No genetic material is gained or lost in a balanced translocation, so these chromosomal changes usually do not cause any health problems in the parent. Source: Genetic Home Reference, National Library of Medicine, Wolf-Hirschhorn syndrome

LP62864-1   FISH
FISH (fluorescence in situ hybridization) is a cytogenetic technique used to detect and localize the presence or absence of specific DNA sequences on chromosomes. FISH uses fluorescent probes that bind to only those parts of the chromosome with which they show a high degree of sequence similarity. Fluorescence microscopy can be used to find out where the fluorescent probe bound to the chromosomes. FISH is often used for finding specific features in DNA for use in genetic counseling, medicine, and species identification. FISH can also be used to detect and localize specific mRNAs within tissue samples. In this context, it can help define the spatial-temporal patterns of gene expression within cells and tissues. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, FISH

LOINC Names Get Info

Fully-Specified Name
4p16.3 chromosome deletion:Prid:Pt:Bld/Tiss:Nom:FISH
Long Common Name
4p16.3 chromosome deletion [Identifier] in Blood or Tissue by FISH Nominal
Short Name
4p16.3 Del Bld/T FISH
Display Name
4p16.3 chromosome del FISH Nom (Bld/Tiss)
Consumer Name Alpha Get Info
4p16.3 chromosome deletion analysis, Blood or tissue specimen

Part Model Get Info

  • Component
    4p16.3 chromosome deletion
    LP227506-5
    • Analyte
      4p16.3 chromosome deletion
      LP227506-5
      • Component Numerator
        4p16.3 chromosome deletion
        LP227506-5
        • Component Numerator Core
          4p16.3 chromosome
          LP172692-8
        • Component Numerator Core Suffix
          deletion
          LP29253-9
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Prid
    LP6850-4
  • Time
    Pt
    LP6960-1
  • System
    Bld/Tiss
    LP7061-7
    • System Core
      Bld/Tiss
      LP7061-7
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    FISH
    LP62864-1

Example Answer List: LL2480-3

Source: Regenstrief LOINC
AnswerCodeScoreAnswer ID
ish 4p16.3(WHSx2)LA19941-6
ish del(4)(p16.3p16.3)(WHS-)LA19937-4

Basic Attributes

Class
MOLPATH.DEL
Type
Laboratory
First Released
Version 2.44
Last Updated
Version 2.61 (MIN)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
ar-JOArabic (Jordan)تشخيص الإضطراب الجزئي للكروموسوم 4p16.3 " في الدم أو الأنسجة والذي يسبب متلازمة وولف هيرشهورن ( بتقمية التهجين الموضعي الفلوري )
cs-CZCzech (Czechia)Chromozom 4p16.3 delece:Přítomnost nebo identita:Časový bod:Krev/tkáň:Nominální:Fluorescenční in situ hybridizace (FISH)
el-GRGreek (Greece)Χρωμόσωμα 4p16.3 διαγραφή:Prid:Pt:Αίμα/Ιστός:Nom:Φθορίζουσα υβριδοποίηση in situ
Synonyms: MOLPATH MOLPATH.DEL Nom Prid Pt Αίμα Αίμα/Ιστός διαγραφή Ιστός Φθορίζουσα υβριδοποίηση in situ Χρωμόσωμα Χρωμόσωμα 4p16.3
es-ESSpanish (Spain)Cromosoma 4p16.3 Deleción:Presencia o identidad:Punto temporal:Sangre o tejido:Nom:Hibridación in situ fluoresente (FISH)
es-MXSpanish (Mexico)Deleción del cromosoma 4p16.3:Presencia o identidad:Punto temporal:Sangre o tejido:Nominal:Hibridación fluorescente in situ (FISH)
fr-FRFrench (France)Chromosome 4p16.3 délétion:Identification:Ponctuel:Sang/Tissu:Résultat nominal:FISH
it-ITItalian (Italy)4p16.3 cromosoma Delezione:Prid:Pt:Sangue/Tess:Nom:FISH
Synonyms: cromosoma 4 in posizione 16 3 Delezione genetica Ibridazione in situ fluorescente (FISH) Patologia molecolare Presenza o Identità Punto nel tempo (episodio) Sangue Sangue o Tessuto Tessuto & Strisci
nl-NLDutch (Netherlands)4p16.3-chromosoom deletie:identificator:moment:bloed of weefsel:nominaal:FISH
pl-PLPolish (Poland)Chromosom 4p16.3 delecja:obecność lub identyfikacja:punkt w czasie:krew lub tkanka:skala nominalna:FISH
Synonyms: Delecja prążka 16.3 krótkiego ramienia chromosomu 4 fluorescencyjna hybrydyzacja in situ Prążek 16.3 krótkiego ramienia chromosomu 4 wynik kategorialny
pt-BRPortuguese (Brazil)4p16.3 cromossomo deleção:Ident:Pt:Sg/Tecido:Nom:FISH
tr-TRTurkish (Turkey)4p16.3 kromozom delesyon:MevcKimlik:Zmlı:Kan/Dk:Snf:FISH
zh-CNChinese (China)4p16.3 染色体 缺失:存在与否或特征标识:时间点:全血/组织:名义型:FISH
Synonyms: Fluorescent in situ hybridization;荧光原位杂交 全血或组织;血液/组织;血液或组织 分子病理学.基因缺失;分子病理学.缺失;分子病理学试验.基因缺失;分子病理学试验.缺失;分子病理学试验类.缺失;基因缺失;缺失 分子病理学;分子病理学试验 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 时刻;随机;随意;瞬间 未作说明的组织;组织;组织 & 涂片 染色体二体型+染色体三体型 染色体缺失;染色体区带缺失;基因缺失;缺损;基因缺损;基因删除;删除;基因丢失 血;血液

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=73749-4