74310-4

PRRSV strain [Identifier] in Isolate by Sequencing

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Term Description

PRRSV strain identified (e.g. IngelvacMLV like Wild Type) in isolate by sequencing. The submitter's lab performs reverse transcriptase PCR on various specimens, including tissue, serum, oral fluid, and semen, to detect and isolate the ORF5 gene. PCR products are then used for sequencing and identifying the PRRSV strain.

Part Descriptions

LP150045-5 Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP175661-0 Porcine reproductive and respiratory syndrome virus strain
Porcine reproductive and respiratory syndrome virus (PRRSV), also referred to as Blue-Ear Pig disease, causes significant disease and can lead to reproductive failures such as weak fetuses, mummified fetuses, abortions or still borns. PRRSV is an RNA virus and belongs to the order Nidovirales, family Arteriviridae and the genus Arterivirus. PRRSV is spread among all ages of pigs and herds through direct and indirect contact. PRRSV is considered one of the most economically important infectious agents in the swine industry worldwide. The continual changing genomic characteristics of the various strains of this virus make testing of herds an important part of disease management. PMID: 26646630 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name: Porcine reproductive and respiratory syndrome virus strain:Prid:Pt:Isolate:Nom:Sequencing
Long Common Name: PRRSV strain [Identifier] in Isolate by Sequencing
Short Name: PRRSV strain Islt Seq
Display Name: PRRSV strain Sequencing Nom (Isol)
Consumer Name Alpha Get Info: PRRSV strain

Part Model Get Info

Component
Porcine reproductive and respiratory syndrome virus strain
LP175661-0
- Analyte
  Porcine reproductive and respiratory syndrome virus strain
  LP175661-0
  - Component Numerator
    Porcine reproductive and respiratory syndrome virus strain
    LP175661-0
    - Component Numerator Core
      Porcine reproductive and respiratory syndrome virus strain
      LP175661-0
    - Component Numerator Core Suffix
      NULL
  - Component Denominator
    NULL
    - Component Denominator Core
      NULL
    - Component Denominator Core Suffix
      NULL
- Challenge
  NULL
- Adjustment
  NULL
- Count
  NULL
Property
Prid
LP6850-4
Time
Pt
LP6960-1
- Time Core
  Pt
  LP6960-1
- Time Modifier
  NULL
System
Isolate
LP7370-2
- System Core
  Isolate
  LP7370-2
- Super System
  NULL
Scale
Nom
LP7750-5
Method
Sequencing
LP150045-5

Example Answer List: LL2756-6

Source: American Association of Veterinary Laboratory Diagnosticians

Answer	Code	Score	Answer ID
IngelvacMLV like Wild Type			LA20560-1
NegativeCopyright http://snomed.info/sct ID:260385009 Negative (qualifier value)			LA6577-6

Basic Attributes

Class: MICRO
Type: Laboratory
First Released: Version 2.46
Last Updated: Version 2.81 (NAM)
Change Reason: Abbreviated "Porcine reproductive and respiratory syndrome virus" to "PRRSV" in the Long Common Name. PRRSV is shorter and more commonly used in test names.
Order vs. Observation: Observation

Language Variants Get Info

Tag	Language	Translation
cs-CZ	Czech (Czechia)	PRRSV kmen identifikovaný:Přítomnost nebo identita:Časový bod:Izolát:Nominální:Sekvenace
el-GR	Greek (Greece)	Στέλεχος του ιού του αναπαραγωγικού και αναπνευστικού συνδρόμου των χοίρων:Prid:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση Synonyms: MICRO Nom Prid Pt Αλληλούχιση Απομονωμένο στέλεχος Ιός Ιός του αναπαραγωγικού και αναπνευστικού συνδρόμου των χοίρων Στέλεχος του ιού του αναπαραγωγικού και αναπνευστικού συνδρόμου των χοίρων Των χοίρων
es-ES	Spanish (Spain)	Cepa del virus del síndrome respiratorio y reproductivo porcino:Presencia o identidad:Punto temporal:Aislado:Nom:Secuenciación
es-MX	Spanish (Mexico)	Se identifica la cepa del virus del síndrome respiratorio y reproductivo porcino:Presencia o identidad:Punto temporal:Aislado:Nominal:Secuenciación
it-IT	Italian (Italy)	Virus della sindrome riproduttiva e respiratoria del suino, variante:Prid:Pt:Isolato:Nom:Sequenziamento Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio) Variante virus PRRS Virus PRRS
nl-NL	Dutch (Netherlands)	'porcine' reproductief en respiratoir syndroomvirus strain:identificator:moment:isolaat:nominaal:sequencing Synonyms: porcine voortplantings- en respiratoir syndroom virus van varken; PRRSV
pl-PL	Polish (Poland)	Szczep wirusa zespołu rozrodczo-oddechowego świń:obecność lub identyfikacja:punkt w czasie:izolat:skala nominalna:sekwencjonowanie Synonyms: Szczep PRRSV wynik kategorialny
pt-BR	Portuguese (Brazil)	Vírus da síndrome porcina reprodutiva e respiratória cêpa identificada:Ident:Pt:Isolado:Nom:Sequenciamento
tr-TR	Turkish (Turkey)	Porsin reprodüktif ve respiratuvar sendrom virüs türü:MevcKimlik:Zmlı:İzolat:Snf:Sekanslama Synonyms: Dizi tayini
zh-CN	Chinese (China)	猪生殖与呼吸综合征病毒株:存在与否或特征标识:时间点:分离株:名义型:序列测定 Synonyms: Lelystad 病毒;PRRS;SIRSV;兰耳病;新猪病;母猪后期流产;猪不育和呼吸综合症;猪不育和呼吸综合症（Swine infertility and respiratory syndrome，SIRSV）;猪生殖与呼吸系统综合症;猪生殖与呼吸综合症（Porcine reproductive and respiratory syndrome，PRRS）;猪繁殖与呼吸综合征;猪蓝耳病;猪蓝色病;神秘仔猪病;神秘猪病;莱利斯塔猪病毒（Lelystad Virus，LV）;蓝耳猪病;蓝耳病;蓝色流产症 PRRSV;猪生殖呼吸综合征病毒;猪呼吸繁殖综合征病毒;猪繁殖与呼吸道综合征病毒;猪繁殖和呼吸障碍综合征;Porcine Reproductive and Respiratory Syndrome;PRRS;蓝耳病;Blue Ear Disease 传染毒;传染毒素;滤过性病原体;病毒类;过滤性病原体分离物;分离菌;分离菌株;隔离种群分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答存在;存在与否;特征标识;身份;身份标识序列分析;测序微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）时刻;随机;随意;瞬间猪的猪科猪科的

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