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Status Information

Status
DEPRECATED
Reason
Duplicate
Comment
The "Probe.mag capture" Method has been deprecated and replaced with the more general "Probe" Method since the "mag capture" portion represents how the nucleic acids are isolated, which is not a distinction made in the LOINC Method for molecular tests. Given that updating the Method would change the meaning of the term, a new term was created to replace the existing term as recommended by the Special Topics workgroup on PCR-based Methods and approved by the LOINC Lab Committee at the June 2017 meeting.
Map-ToLong Common NameMapping Guidance
88254-8Citrobacter sp ompA+mrkC genes [Presence] by Probe in Positive blood culture

Term Description

Magnetic beads and fluorescent probes are used to capture and detect targeted nucleic acid sequences specific to Citrobacter species within the ompA and mrkC genes in positive blood culture. The ompA gene encodes "outer membrane protein A" and the mrkC gene encodes "type 3 fimbriae usher".

Part Descriptions

LP183540-6   Probe.mag capture
Nucleic acid is first concentrated and purified using a bead-based method, followed by a oligonucleotide probe detection of sequence of interest with signal enhancement. Source: Regenstrief LOINC

LP185691-5   Citrobacter sp (ompA+mrkC) genes
Citrobacter is a genus of Gram-negative bacteria in the Enterobacteriaceae family and commonly found in soil, water and wastewater. They can also be found in the human intestine. They are rarely the source of illnesses, except for infections of the urinary tract, infant meningitis and sepsis. C. freundii strains have inducible ampC genes encoding resistance to ampicillin and first-generation cephalosporins. In addition, isolates of Citrobacter may be resistant to many other antibiotics as a result of resistance genes. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Citrobacter

LOINC Names Get Info

Fully-Specified Name
Citrobacter sp (ompA+mrkC) genes:PrThr:Pt:Bld.pos growth:Ord:Probe.mag capture
Long Common Name
Deprecated Citrobacter sp (ompA+mrkC) genes [Presence] by Nucleic acid capture and probe detection in Positive blood culture
Short Name
Deprecated Citrobac sp ompA+mrkC Bld Pos Ql Prb Mag
Display Name
Citrobacter sp ompA+mrkC genes Nucleic acid capture and probe detection Ql (Pos bld culture)
Consumer Name Alpha Get Info
Citrobacter species ompA+mrkC genes, Infected blood

Part Model Get Info

  • Component
    Citrobacter sp (ompA+mrkC) genes
    LP185691-5
    • Analyte
      Citrobacter sp (ompA+mrkC) genes
      LP185691-5
      • Component Numerator
        Citrobacter sp (ompA+mrkC) genes
        LP185691-5
        • Component Numerator Core
          Citrobacter sp (ompA+mrkC) genes
          LP185691-5
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    Bld.pos growth
    LP183539-8
    • System Core
      Bld.pos growth
      LP183539-8
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Probe.mag capture
    LP183540-6

Example Answer List: LL744-4

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.50
Last Updated
Version 2.63 (DEL)
Change Reason
The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Observation

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Citrobacter sp geny ompA+mrkC:Přítomnost nebo práh:Časový bod:Krev pozitivní kultivace:Ordinální:Hybridizace s magnetickým záchytem
el-GRGreek (Greece)Γονίδια (ompA+mrkC) του Citrobacter sp:PrThr:Pt:Αίμα.θετική ανάπτυξη:Ord:Ανιχνευτής.μαγνητική σύλληψη
Synonyms: MICRO Ord PrThr Pt Αίμα Αίμα.θετική ανάπτυξη Ανιχνευτής Ανιχνευτής.μαγνητική σύλληψη Βακτήριο Citrobacter sp Γονίδια (ompA+mrkC) του Citrobacter sp
es-ESSpanish (Spain)genes (ompA+mrkC) Citrobacter sp:PrThr:Punto temporal:Sangre crecimiento positivo:Ord:Hibridación por capturas magnéticas
es-MXSpanish (Mexico)Genes de Citrobacter sp (ompA + mrkC):Presencia o umbral:Punto temporal:Hemocultivo positivo:Ordinal:Hibridación de captura magnética
fr-FRFrench (France)Citrobacter ompA+mrkC gènes:Présence/Seuil:Ponctuel:Hémoculture positive:Qualitatif:Sonde de capture magnétique
it-ITItalian (Italy)Citrobacter sp (ompA+mrkC), geni:PrThr:Pt:Emocolture positive:Ord:Sonda.cattura mag
Synonyms: Geni citrobacter sp (ompA+mrkC) Ibridizzazione cattura magnetica Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sangue Sonda di DNA
zh-CNChinese (China)柠檬酸杆菌属 (ompA+mrkC) 基因:存在情况或阈值:时间点:血液.生长阳性:序数型:探针.磁捕获
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 分子病理学 - 基因类 基因 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 柠檬酸杆菌 (ompA+mrkC) 基因;枸橼酸杆菌属 (ompA+mrkC) 基因;枸橼酸杆菌 (ompA+mrkC) 基因;柠檬酸菌属 (ompA+mrkC) 基因;柠檬酸菌 (ompA+mrkC) 基因;枸橼酸菌属 (ompA+mrkC) 基因;枸橼酸菌 (ompA+mrkC) 基因 柠檬酸杆菌;柠檬酸菌属;枸橼酸菌属;枸橼酸杆菌属;柠檬酸菌;枸橼酸菌;枸橼酸杆菌;柠檬酸杆菌单个未知种 物种 生物种 磁捕获杂交法;磁性捕获杂交法;磁力捕获杂交法;Magnetic capture hybridization 脱氧核糖核酸探针 血;血液 血液.阳性生长;血培养阳性;阳性血培养;阳性血液培养;全血.生长阳性

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=75675-9