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Term Description

This assay comprises qRT-PCR targeting the ns5 gene in the yellow fever backbone followed by melt curve analysis, which identifies DNA fragments with different nucleotide compositions based on their unique melting temperature. PMID: 18501437 CSF testing is indicated for suspected adverse neurological reactions to the vaccine against yellow fever. Genome detection of CSF yellow fever vaccine in this context is considered diagnostic. In suspected patients, detection of antibodies against yellow fever in CSF should also be requested.

Part Description

LP203622-8   Yellow fever virus ns5 gene
Yellow fever (also called yellow jack, black vomit or vomito negro in Spanish, or sometimes American Plague) is an acute viral disease. It is an important cause of hemorrhagic illness in many African and South American countries despite existence of an effective vaccine. The yellow in the disease name refers to the jaundice that affects some patients. Yellow fever has been a source of several devastating epidemics. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Yellow fever virus (Wikipedia)

LOINC Names Get Info

Fully-Specified Name
Yellow fever virus ns5 gene:PrThr:Pt:CSF:Ord:Non-probe.amp.tar
Long Common Name
Yellow fever virus ns5 gene [Presence] in Cerebrospinal Fluid by NAA with non-probe detection
Short Name
YFV ns5 gene CSF Ql NAA+n-prb
Display Name
Yellow fever virus ns5 gene NAA+non-probe Ql (CSF)
Consumer Name Alpha Get Info
Yellow Fever virus Ns5 gene, Spinal fluid

Part Model Get Info

  • Component
    Yellow fever virus ns5 gene
    LP203622-8
    • Analyte
      Yellow fever virus ns5 gene
      LP203622-8
      • Component Numerator
        Yellow fever virus ns5 gene
        LP203622-8
        • Component Numerator Core
          Yellow fever virus ns5 gene
          LP203622-8
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    CSF
    LP7156-5
    • System Core
      CSF
      LP7156-5
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Non-probe.amp.tar
    LP208998-7

Example Answer List: LL360-9

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
PositiveCopyright http://snomed.info/sct ID:10828004 Positive (qualifier value)LA6576-8
NegativeCopyright http://snomed.info/sct ID:260385009 Negative (qualifier value)LA6577-6

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.54
Last Updated
Version 2.83 (MIN)
Change Reason
Changed Method from "Melt.amp.tar" to "Non-probe.amp.tar", which includes other non-probe based detection methods while still distinguishing from probe-based methods.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.
Order vs. Observation
Both

Member of these Groups Get Info

LOINC GroupGroup Name
LG32769-8Yellow fever virus

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Virus žluté zimnice gen ns5:Přítomnost nebo práh:Časový bod:Mozkomíšní mok:Ordinální:Amplifikace nukleových kyselin s detekcí bez sondy
de-DEGerman (Germany)Gelbfieber-Virus ns5-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Liquor:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
Synonyms: Zerebrospinalflüssigkeit
el-GRGreek (Greece)Γονίδιο ns5 ιού κίτρινου πυρετού:PrThr:Pt:ΕΝΥ:Ord:Χωρίς ανιχνευτή.ενίσχυση.στόχου
Synonyms: MICRO Ord PrThr Pt Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο ns5 ιού κίτρινου πυρετού ΕΝΥ Ιός Ιός κίτρινου πυρετού Πυρετός Χωρίς ανιχνευτή.ενίσχυση.στόχου
es-ESSpanish (Spain)gen ns5 del virus de la fiebre amarilla:PrThr:Punto temporal:Líquido Cefalorraquideo:Ord:Amplificación del objetivo no basado en sonda
es-MXSpanish (Mexico)Gen ns5 del virus de la fiebre amarilla:Presencia o umbral:Punto temporal:Fluído espinal cerebral:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FRFrench (France)Fièvre jaune virus gène ns5:Présence/Seuil:Ponctuel:Liquide céphalorachidien:Qualitatif:Non-PCR amplification de cible
it-ITItalian (Italy)Virus della febbre gialla, gene ns5:PrThr:Pt:LCS:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Liquido cerebrospinale Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus della febbre gialla
pl-PLPolish (Poland)Wirus żółtej gorączki gen NS5:granica wykrywalności:punkt w czasie:płyn mózgowo-rdzeniowy:uporządkowany:bez sondy.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Gen NS5 wirusa żółtej gorączki
zh-CNChinese (China)黄热病病毒 ns5 基因:存在情况或阈值:时间点:脑脊液:序数型:非探针法.基因扩增.靶向
Synonyms: CSF CSF;脊髓液;Cerebral spinal fluid;脑脊髓液 YFV;黄热病毒 传染毒;传染毒素;滤过性病原体;病毒类;过滤性病原体 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 发烧;热病 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 经过扩增的 脊液 脊髓液 脑脊液（Cerebral spinal fluid，CSF） 脑脊髓液 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因 黄热病病毒（YFV、黄热病毒） ns5 基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=77959-5