88716-6 Adenovirus A+B+C+D+E+F DNA [Presence] in Nasopharynx by NAA with probe detection

Term Description

This term is used for assays that detect but do not differentiate Adenovirus species A, B, C, D, E, and F. This code was created for, but not limited in use to, the submitter's test kit, GenMark ePlex Respiratory Pathogen (RP) Panel, a qualitative nucleic acid multiplex in vitro assay that uses electrowetting.
Source: Regenstrief LOINC

Part Descriptions

LP263696-9   Adenovirus A+B+C+D+E+F
Adenoviruses, medium-sized (90-100 nm), non-enveloped icosohedral viruses with double-stranded DNA, have over 50 immunologically distinct types that cause infections in humans. Adenoviruses usually cause respiratory illness with symptoms ranging from the common cold to pneumonia, croup, and bronchitis. Adenoviruses can cause other illnesses such as gastroenteritis, conjunctivitis, cystitis, and less commonly, neurological disease. Infants and individuals with weakened immune systems are at high risk for severe complications of adenovirus infection and adenoviruses commonly cause acute respiratory illness in military recruits. Some asymptomatic people infected with adenoviruses have ongoing infections in their tonsils, adenoids, and intestines and can shed the virus for months or years. The virus can persist outside the body for long periods. Adenovirus infections can be detected using antigen detection, polymerase chain reaction assay, virus isolation, and serology. Typing is usually done by hemagglutination-inhibition and/or neutralization with type-specific antisera or by molecular methods. As of October 2014 there is no adenovirus vaccine for the general public, however an oral vaccine against types 4 and 7 was approved by the U.S. Food and Drug Administration in March 2011 for U.S. military personnel. The vaccine is recommended by the U.S. Department of Defense for military recruits entering basic training in order to prevent acute respiratory disease. Most adenovirus infections are mild and typically require only treatment of symptoms.[CDC: Adenovirus] There are seven subgroups or species of adenovirus labeled A through G. The subgroups of adenovirus infect certain areas of the body. Subgroups A and F are usually found in the gastrointestinal tract. Subgroups B, C and E tend to infect the respiratory tract. Subgroup D is the cause of epidemic kerato-conjunctivitis.[http://journals.lww.com/pidj/Documents/Adenovirus%20ESPID%20June%2012.pdf]Subgroup G causes gastroenteritis. The DNA homology between the subgroups is less than 20%. PMID: 24678403 Source: Regenstrief LOINC

Fully-Specified Name

Component

Adenovirus A+B+C+D+E+F DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HAdV A+B+C+D+E+F DNA Nph Ql NAA+probe

Display Name

Adenovirus A+B+C+D+E+F DNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Adenovirus A+B+C+D+E+F, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.64

Last Updated

Version 2.64

Order vs. Observation

Both

Example Answer List LL3713-6

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• A,B
• Adeno virus
• Amplif
• Amplification
• Amplified
• AV A+B+C+D+E+F DNA
• Deoxyribonucleic acid
• Dextro
• DNA NUCLEIC ACID PROBE
• DNA probe
• HAdV
• HAdV A+B+C+D+E
• HAdV A+B+C+D+E+F
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80586-1 Adenovirus hexon gene [Presence] in Nasopharynx by NAA with probe detection

Term Description

Detection of targeted nucleic acid sequences in the adenovirus hexon gene by PCR-based methods. This term was created for, but not limited in use to, the Verigene® Respiratory Pathogens Flex Nucleic Acid Test (RP Flex), a multiplexed, qualitative test for the detection and identification of multiple viral and bacterial genetic virulence markers from nasopharyngeal swab specimens.
Source: Regenstrief LOINC

Part Descriptions

LP206559-9   Adenovirus hexon gene
Human adenoviruses (HAdVs) cause diseases of the respiratory, ocular, and gastrointestinal tracts. Most infections are mild but severe and occasionally fatal infections have been reported in newborns and infants. PMID: 22414179 PCR-based methods targeting a conserved region of the HAdV hexon gene are used to detect and identify HAdVs. PMID: 23325827 Source: Regenstrief LOINC

Fully-Specified Name

Component

Adenovirus hexon gene

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

Adenovirus hexon gene Nph Ql NAA+probe

Display Name

Adenovirus hexon gene NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Adenovirus hexon gene, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Order vs. Observation

Both

Common Test Rank Get Info

4547

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Adeno virus
• Amplif
• Amplification
• Amplified
• DNA NUCLEIC ACID PROBE
• DNA probe
• HAdV
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

76070-2 Adenovirus DNA [Presence] in Nasopharynx by NAA with probe detection

Part Descriptions

LP14061-3   Adenovirus
Adenoviruses, medium-sized (90-100 nm), non-enveloped icosohedral viruses with double-stranded DNA, have over 50 immunologically distinct types that cause infections in humans. Adenoviruses usually cause respiratory illness with symptoms ranging from the common cold to pneumonia, croup, and bronchitis. Adenoviruses can cause other illnesses such as gastroenteritis, conjunctivitis, cystitis, and less commonly, neurological disease. Infants and individuals with weakened immune systems are at high risk for severe complications of adenovirus infection and adenoviruses commonly cause acute respiratory illness in military recruits. Some asymptomatic people infected with adenoviruses have ongoing infections in their tonsils, adenoids, and intestines and can shed the virus for months or years. The virus can persist outside the body for long periods. Adenovirus infections can be detected using antigen detection, polymerase chain reaction assay, virus isolation, and serology. Typing is usually done by hemagglutination-inhibition and/or neutralization with type-specific antisera or by molecular methods. As of October 2014 there is no adenovirus vaccine for the general public, however an oral vaccine against types 4 and 7 was approved by the U.S. Food and Drug Administration in March 2011 for U.S. military personnel. The vaccine is recommended by the U.S. Department of Defense for military recruits entering basic training in order to prevent acute respiratory disease. Most adenovirus infections are mild and typically require only treatment of symptoms. Source: Centers for Disease Control and Prevention, CDC: Adenovirus

Fully-Specified Name

Component

Adenovirus DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HAdV DNA Nph Ql NAA+probe

Display Name

Adenovirus DNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Adenovirus, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.50

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

5820

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Adeno virus
• Amplif
• Amplification
• Amplified
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• HAdV
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

45271-4 Bordetella bronchiseptica DNA [Presence] in Nasopharynx by NAA with probe detection

Part Descriptions

LP19875-1   Bordetella bronchiseptica
A species of BORDETELLA that is parasitic and pathogenic. It is found in the respiratory tract of domestic and wild mammalian animals and can be transmitted from animals to man. It is a common cause of bronchopneumonia in lower animals. Source: National Library of Medicine, MeSH 2006

Fully-Specified Name

Component

Bordetella bronchiseptica DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

B bronch DNA Nph Ql NAA+probe

Display Name

B. bronchiseptica DNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Bordetella bronchiseptica, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.17

Last Updated

Version 2.63

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B bronch
• B bronchiseptica
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

80599-4 Bordetella holmesii fumC gene [Presence] in Nasopharynx by NAA with probe detection

Term Description

Detection of targeted nucleic acid sequences in the Bordetella holmesii fumC gene by PCR-based methods. This term was created for, but not limited in use to, the Verigene® Respiratory Pathogens Flex Nucleic Acid Test (RP Flex), a multiplexed, qualitative test for the detection and identification of multiple viral and bacterial genetic virulence markers from nasopharyngeal swab specimens.
Source: Regenstrief LOINC

Part Descriptions

LP206590-4   Bordetella holmesii fumC gene
Bordetella holmesii is a Gram-negative bacillus associated with bacteremia, endocarditis, and respiratory illness, mainly in immunocompromised patients. PMID: 14999621 B. holmesii can be detected by PCR-based methods targeting fumC, a housekeeping gene which encodes the fumarate hydratase class II protein. Source: Regenstrief LOINC

Fully-Specified Name

Component

Bordetella holmesii fumC gene

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

B holmesii fumC Nph Ql NAA+probe

Display Name

B. holmesii fumC gene NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Bordetella holmesii fumC gene, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Order vs. Observation

Observation

Common Test Rank Get Info

9078

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B holmesii fumC
• B holmseii
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

42588-4 Bordetella parapertussis DNA [Presence] in Nasopharynx by NAA with probe detection

Part Descriptions

LP14556-2   Bordetella parapertussis
Bordetella parapertussis is a species of Bordetella and is increasingly being identified as the cause of pertussis-like symptoms, including coughing paroxysms, whooping, and post-tussive emesis. Originally thought to cause milder illness than B. pertussis, more recent studies have shown that the two species have similar severity. B. pertussis vaccination does not protect again B. parapertussis infection and in fact, may actually increase susceptibility to parapertussis. PMID: 28514288 B. parapertussis is a strictly aerobic, non-motile, gram-negative coccobacillus and that is difficult to isolate using traditional culture techniques. Diagnostic techniques include culture, molecular assays, and serology. PMID: 26242280 Source: Regenstrief LOINC

Fully-Specified Name

Component

Bordetella parapertussis DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

B parapert DNA Nph Ql NAA+probe

Display Name

B. parapertussis DNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Bordetella parapertussis, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.16

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

5545

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B parapert
• B parapertussis
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Whooping cough

43913-3 Bordetella pertussis DNA [Presence] in Nasopharynx by NAA with probe detection

Part Descriptions

LP14371-6   Bordetella pertussis
Bordetella pertussis is a species of Bordetella that causes pertussis, also known as whooping cough. Pertussis causes coughing paroxysms, whooping, and post-tussive emesis. Vaccination against B. pertussis can prevent disease; however, B. parapertussis, another species of Bordetella, also causes illness that is often indistinguishable from pertussis, and the B. pertussis vaccine does not protect against B. parapertussis infection. PMID: 28514288 Both B. pertussis and parapertussis are strictly aerobic, non-motile, gram-negative coccobacilli that are difficult to isolate using traditional culture techniques. Diagnostic techniques include culture, molecular assays, and serology. PMID: 26242280 Source: Regenstrief LOINC

Fully-Specified Name

Component

Bordetella pertussis DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

B pert DNA Nph Ql NAA+probe

Display Name

B. pertussis DNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Bordetella pertussis, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.17

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

1600

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B pert
• B pertussis
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Pertussis
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Whooping cough

80600-0 Bordetella pertussis.pertussis toxin promoter region [Presence] in Nasopharynx by NAA with probe detection

Term Description

Detection of targeted nucleic acid sequences in the Bordetella pertussis toxin promoter region by PCR-based methods. This term was created for, but not limited in use to, the Verigene® Respiratory Pathogens Flex Nucleic Acid Test (RP Flex), a multiplexed, qualitative test for the detection and identification of multiple viral and bacterial genetic virulence markers from nasopharyngeal swab specimens
Source: Regenstrief LOINC

Part Descriptions

LP206591-2   Bordetella pertussis.pertussis toxin promoter region
The pertussis toxin (PT) promoter region is involved in the regulation of virulence factors for Bordetella pertussis and is a commonly used target for the DNA-based diagnosis of B. pertussis infections. PMID: 10618063 Since the PT promoter region is present in other Bordetella species, including B. parapertussis, generic primers may be used for rapid detection and differentiation of the species. PMID: 8815088 Source: Regenstrief LOINC

Fully-Specified Name

Component

Bordetella pertussis.pertussis toxin promoter region

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

B pert.PT Prmt Nph Ql NAA+probe

Display Name

B. pertussis toxin promoter region NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Bordetella pertussis.pertussis toxin promoter region, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Change Reason

Changed Bordetella pertussis toxin to Bordetella pertussis.pertussis toxin for accuracy.

Order vs. Observation

Observation

Common Test Rank Get Info

9079

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B pert
• B pert.PT
• B pert.PT Prmt
• B pertussis
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Pertussis
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Whooping cough

80601-8 Bordetella pertussis+parapertussis+bronchiseptica gidA gene [Presence] in Nasopharynx by NAA with probe detection

Term Description

Detection of nucleic acid sequences in the Bordetella pertussis, parapertussis and B. bronchiseptica gidA gene by PCR-based methods. This test does not differentiate between the species. This term was created for, but not limited in use to, the Verigene® Respiratory Pathogens Flex Nucleic Acid Test (RP Flex).
Source: Regenstrief LOINC

Part Descriptions

LP206592-0   Bordetella pertussis+parapertussis+bronchiseptica gidA gene
The Bordetella species gidA (or mnmG) gene encodes the tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG (also known as Glucose-inhibited division protein A).[UniProt: A0A0J6C686] The gidA gene is used as a target for the DNA-based diagnosis of respiratory infections caused by Bordetella species, including B. parapertussis and B. bronchiseptica. Source: Regenstrief LOINC

Fully-Specified Name

Component

Bordetella pertussis+parapertussis+bronchiseptica gidA gene

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

B per+par+bron gidA Nph Ql NAA+probe

Display Name

B. pertussis+parapertussis+bronchiseptica gidA gene NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Bordetella pertussis+parapertussis+bronchiseptica gidA gene, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Order vs. Observation

Observation

Common Test Rank Get Info

6417

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B per+par+bron gidA
• B pert
• B pertussis
• DNA NUCLEIC ACID PROBE
• DNA probe
• Glucose-inhibited division protein A
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lung
• Microbiology
• mnmG
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Pertussis
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• Pulmonary
• Pulmonology
• QBR
• QL
• Qual
• Qualitative
• Random
• Respiratory
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
• Whooping cough

88718-2 Chlamydophila pneumoniae DNA [Presence] in Nasopharynx by NAA with probe detection

Term Description

This code was created for, but not limited in use to, the submitter's test kit, GenMark ePlex Respiratory Pathogen (RP) Panel, a qualitative nucleic acid multiplex in vitro assay that uses electrowetting technology.
Source: Regenstrief LOINC

Part Descriptions

LP14396-3   Chlamydophila pneumoniae
Chlamydophila pneumoniae belongs to the Chlamydiaceae bacterial family. C pneumoniae is a frequent cause of acute respiratory infection, such as, pharyngitis, bronchitis, sinusitis, and community-acquired pneumonia (CAP). It is typically spread by coughing or sneezing, and initial infection usually occurs in school-age children. Most infections are self-limited, but outbreaks can occur in group settings such as schools and barracks. IgG antibodies to C. pneumonia can persist for years after infection. PMID: 22514397 Source: Regenstrief LOINC

Fully-Specified Name

Component

Chlamydophila pneumoniae DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

C pneum DNA Nph Ql NAA+probe

Display Name

C. pneumoniae DNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Chlamydophila pneumoniae, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.64

Last Updated

Version 2.64

Order vs. Observation

Both

Example Answer List LL3713-6

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• C pneum
• C pneumo
• C pneumoniae
• Chlamydia
• Chlamydia pneumoniae
• CPN
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Pneu
• pneum
• Pneumo
• Pneumon
• Pneumonia
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Twar agent

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

76074-4 Enterovirus RNA [Presence] in Nasopharynx by NAA with probe detection

Part Descriptions

LP16864-8   Enterovirus
Enteroviruses are small, non-enveloped, single stranded RNA viruses in the picornavirus family and include coxsackievirus, rhinovirus, echovirus, and poliovirus species. They are the most common viral pathogen worldwide, and clinical manifestations range from mild, cold-like symptoms to severe infections, including encephalitis, aseptic (viral) meningitis, and myocarditis. Enterovirus infection has also been associated with the onset of type I diabetes mellitus. PMID: 23764548 Source: Regenstrief LOINC, PMID: 23764548

Fully-Specified Name

Component

Enterovirus RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

EV RNA Nph Ql NAA+probe

Display Name

Enterovirus RNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Enterovirus, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.50

Last Updated

Version 2.63

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• DNA NUCLEIC ACID PROBE
• DNA probe
• Entero virus
• EV
• EV-PCR
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

77008-1 Human coronavirus 229E+OC43 RNA [Presence] in Nasopharynx by NAA with probe detection

Term Description

Human coronavirus 229E is a single-stranded, positive-sense, RNA virus species in the Alphacoronavirus genus of the subfamily Coronavirinae, in the family Coronaviridae, of the order Nidovirales. Human coronavirus OC43 is an enveloped, positive-sense, single-stranded RNA virus species in the Betacoronavirus genus, of the subfamily Coronavirinae, in the family Coronaviridae, of the order Nidovirales. [Wikipedia] This assay tests for Human coronavirus 229E and OC43 RNA but does not distinguish between them.
Source: Regenstrief LOINC

Part Descriptions

LP189868-5   Human coronavirus 229E+OC43
Coronaviruses, named for the crown-like spikes on their surface, are common viruses that cause mild to moderate upper-respiratory tract illnesses of a short duration. There are four main sub-groupings of coronaviruses, known as alpha, beta, gamma, and delta. The six coronaviruses that can infect humans are: alpha coronaviruses 229E and NL63, and beta coronaviruses OC43, HKU1, SARS-CoV (the coronavirus that causes severe acute respiratory syndrome, or SARS), and MERS-CoV (Middle East Respiratory Syndrome, or MERS). Infections are common with human coronaviruses 229E, NL63, OC43, and HKU1. The exceptions are SARS-CoV and MERS-CoV. SARS-CoV (severe acute respiratory syndrome) was first recognized in China in November 2002 causing a worldwide outbreak from 2002 to 2003. Since 2004, there have no reported cases of SARS-CoV infection. MERS-CoV, first reported in Saudi Arabia in 2012, has caused illness in hundreds of people from several countries. All cases to date have been linked to countries in and near the Arabian Peninsula. Source: Regenstrief LOINC, CDC: Coronavirus

Fully-Specified Name

Component

Human coronavirus 229E+OC43 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HCoV 229E+OC43 RNA Nph Ql NAA+probe

Display Name

HCoV 229E+OC43 RNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Human coronavirus 229E+OC43, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.52

Last Updated

Version 2.63

Change Reason

Added "RNA" to the Component. The Long Common Name and Shortname had RNA included but it was missing in the Component.; The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV 229E
• HCoV 229E+OC43
• HCoV 229E+OC43 RNA
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

88719-0 Human coronavirus 229E+HKU1+NL63+OC43 RNA [Presence] in Nasopharynx by NAA with probe detection

Term Description

This term is used for assays that detect but do not differentiate between human coronavirus strains 229E, HKU1, NL63, and OC43. This code was created for, but not limited in use to, the submitter's test kit, GenMark ePlex Respiratory Pathogen (RP) Panel, a qualitative nucleic acid multiplex in vitro assay that uses electrowetting technology.
Source: Regenstrief LOINC

Part Descriptions

LP263694-4   Human coronavirus 229E+HKU1+NL63+OC43 RNA
Coronaviruses are positive-sense, single-stranded RNA viruses. The envelope of the virus has glycoprotein spikes that give it a crown-like appearance. There are six strains of coronavirus within two subgroups that infect humans. The strains of human coronaviruses that commonly infect people worldwide include 229E and NL63 in the Alpha subgroup and OC43 and HKU1 in the Beta subgroup. These viruses most often cause common cold symptoms, but can also lead to pneumonia. Severe acute respiratory syndrome coronavirus (SARS-CoV) and the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) are less common but cause more severe illness.[https://www.cdc.gov/coronavirus/types.html][https://academic.oup.com/cid/article/37/7/929/422314] Source: Regenstrief LOINC

Fully-Specified Name

Component

Human coronavirus 229E+HKU1+NL63+OC43 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HCoV 229E+HKU1+NL63+OC43 Nph Ql NAA+Pr

Display Name

HCoV 229E+HKU1+NL63+OC43 RNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Human coronavirus 229E+HKU1+NL63+OC43, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.64

Last Updated

Version 2.64

Order vs. Observation

Both

Example Answer List LL3713-6

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Corona virus
• CoV 229E+HKU1+NL63+OC43
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV 229E
• HCoV 229E+HKU1+NL63+OC43
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80587-9 Human metapneumovirus A+B L+N genes [Presence] in Nasopharynx by NAA with probe detection

Term Description

Detection of nucleic acid sequences in the human metapneumovirus (hMPV) A polymerase/large protein (L) gene and hMPV B nucleoprotein (N) gene by PCR-based methods. This test does not differentiate between the mMPV A and B species. This term was created for, but not limited in use to, the Verigene® Respiratory Pathogens Flex Nucleic Acid Test (RP Flex), a multiplexed, qualitative test for the detection and identification of multiple viral and bacterial genetic virulence markers from nasopharyngeal swab specimens.
Source: Regenstrief LOINC

Part Descriptions

LP206580-5   Human metapneumovirus A+B L+N genes
Human metapneumovirus (hMPV) is a Paramyxoviridae family virus that causes upper and lower respiratory tract infections in the very young, elderly and those with compromised immune systems. hMPV can vary in its size, shape and staining properties, and shares similar structure with avian pneumovirus (aMPV) and human respiratory syncytial virus (hRSV). Typically, molecular testing methods, like reverse transcriptase PCR (RT-PCR), are used to detect hMPV. hMPV is thought to be responsible for about 5% to 10% of pediatric hospitalizations of those suffering from acute respiratory tract infection. PMID: 24841931 Source: Regenstrief LOINC

Fully-Specified Name

Component

Human metapneumovirus A+B L+N genes

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

hMPV A+B L+N genes Nph Ql NAA+probe

Display Name

hMPV A+B L+N genes NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Human metapneumovirus A+B, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Order vs. Observation

Both

Common Test Rank Get Info

4542

Example Answer List LL744-4

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• A,B
• Amplif
• Amplification
• Amplified
• DNA NUCLEIC ACID PROBE
• DNA probe
• hMPV
• hMPV A
• hMPV A+B L+N genes
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Left
• Levo
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

77024-8 Human metapneumovirus RNA [Presence] in Nasopharynx by NAA with probe detection

Term Description

This code was created for, but is not limited in use to, the GenMark eSensor Respiratory Viral Panel (RVP), a qualitative nucleic acid multiplex in vitro assay which detects viral nucleic acids in nasopharyngeal swabs from individuals exhibiting signs and symptoms of respiratory infection.
Source: Regenstrief LOINC

Part Descriptions

LP34982-6   Human metapneumovirus
Human metapneumovirus (hMPV) is a Paramyxoviridae family virus that causes upper and lower respiratory tract infections in the very young, elderly and those with compromised immune systems. hMPV can vary in its size, shape and staining properties, and shares similar structure with avian pneumovirus (aMPV) and human respiratory syncytial virus (hRSV). Typically, molecular testing methods, like reverse transcriptase PCR (RT-PCR), are used to detect hMPV. hMPV is thought to be responsible for about 5% to 10% of pediatric hospitalizations of those suffering from acute respiratory tract infection. PMID: 24841931 Source: Regenstrief LOINC

Fully-Specified Name

Component

Human metapneumovirus RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

hMPV RNA Nph Ql NAA+probe

Display Name

hMPV RNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Human metapneumovirus, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.52

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Observation

Common Test Rank Get Info

5816

Example Answer List LL2872-1

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• DNA NUCLEIC ACID PROBE
• DNA probe
• hMPV
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

77028-9 Influenza virus A H1 2009 pandemic RNA [Presence] in Nasopharynx by NAA with probe detection

Term Description

This code was created for, but is not limited in use to, the GenMark eSensor Respiratory Viral Panel (RVP), a qualitative nucleic acid multiplex in vitro assay which detects viral nucleic acids in nasopharyngeal swabs from individuals exhibiting signs and symptoms of respiratory infection.
Source: Regenstrief LOINC

Part Descriptions

LP94776-9   Influenza virus A H1 2009 pandemic
An influenza virus that had never been identified as a cause of infections in people before the 2009 H1N1 (Swine flu) pandemic. Genetic analyses of this virus showed that it originated from animal influenza viruses and was unrelated to the human seasonal H1N1 viruses that had been in general circulation among people since 1977. Antibodies to the seasonal H1N1 virus did not protect against the pandemic H1N1 virus, however a significant percentage of people age 65 and older had some immunity against the pandemic virus. After early outbreaks in North America in April 2009 the new influenza virus spread rapidly around the world. Unlike typical seasonal flu patterns, the new virus caused high levels of summer infections in the northern hemisphere, and then even higher levels of activity during cooler months. The virus also led to patterns of death and illness not normally seen in influenza infections. Most of the deaths occurred among younger people, including those who were otherwise healthy. Source: Regenstrief LOINC, WHO: What is the pandemic (H1N1) 2009 virus?

Fully-Specified Name

Component

Influenza virus A H1 2009 pandemic RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV H1 2009 pand RNA Nph Ql NAA+probe

Display Name

FLUAV H1 2009 pand RNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Influenza A H1 2009 Pand, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.52

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Observation

Common Test Rank Get Info

19821

Example Answer List LL2872-1

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H1
• FLUAV H1 2009 pand
• FLUV
• Fowl plague
• H1N1
• H1N1v
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• Influenza virus A hemagglutinin H1 swine origin
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• S-OIV
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80589-5 Influenza virus A H1 HA gene [Presence] in Nasopharynx by NAA with probe detection

Term Description

Detection of targeted nucleic acid sequences in the Influenza virus A H1 hemagglutinin (HA) gene by PCR-based methods. This term was created for, but not limited in use to, the Verigene® Respiratory Pathogens Flex Nucleic Acid Test (RP Flex), a multiplexed, qualitative test for the detection and identification of multiple viral and bacterial genetic virulence markers from nasopharyngeal swab specimens.
Source: Regenstrief LOINC

Part Descriptions

LP206572-2   Influenza virus A H1 HA gene
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens. Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A H1 HA gene

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV H1 HA gene Nph Ql NAA+probe

Display Name

FLUAV H1 HA gene NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Influenza A H1 HA gene, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Order vs. Observation

Both

Common Test Rank Get Info

6592

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H1
• FLUAV H1 HA gene
• FLUV
• Fowl plague
• Hemagglutinin
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

77026-3 Influenza virus A H1 RNA [Presence] in Nasopharynx by NAA with probe detection

Term Description

This code was created for, but is not limited in use to, the GenMark eSensor Respiratory Viral Panel (RVP), a qualitative nucleic acid multiplex in vitro assay which detects viral nucleic acids in nasopharyngeal swabs from individuals exhibiting signs and symptoms of respiratory infection.
Source: Regenstrief LOINC

Part Descriptions

LP35168-1   Influenza virus A H1
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens. Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A H1 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV H1 RNA Nph Ql NAA+probe

Display Name

FLUAV H1 RNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Influenza A H1, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.52

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Observation

Common Test Rank Get Info

5764

Example Answer List LL2872-1

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H1
• FLUV
• Fowl plague
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80590-3 Influenza virus A H3 HA gene [Presence] in Nasopharynx by NAA with probe detection

Term Description

Detection of targeted nucleic acid sequences in the Influenza virus A H3 hemagglutinin (HA) gene by PCR-based methods. This term was created for, but not limited in use to, the Verigene® Respiratory Pathogens Flex Nucleic Acid Test (RP Flex), a multiplexed, qualitative test for the detection and identification of multiple viral and bacterial genetic virulence markers from nasopharyngeal swab specimens.
Source: Regenstrief LOINC

Part Descriptions

LP206582-1   Influenza virus A H3 HA gene
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens. Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A H3 HA gene

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV H3 HA gene Nph Ql NAA+probe

Display Name

FLUAV H3 HA gene NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Influenza A H3 HA gene, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Order vs. Observation

Observation

Common Test Rank Get Info

6593

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H3
• FLUAV H3 HA gene
• FLUV
• Fowl plague
• Hemagglutinin
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

77027-1 Influenza virus A H3 RNA [Presence] in Nasopharynx by NAA with probe detection

Term Description

This code was created for, but is not limited in use to, the GenMark eSensor Respiratory Viral Panel (RVP), a qualitative nucleic acid multiplex in vitro assay which detects viral nucleic acids in nasopharyngeal swabs from individuals exhibiting signs and symptoms of respiratory infection.
Source: Regenstrief LOINC

Part Descriptions

LP35176-4   Influenza virus A H3
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens. Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A H3 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV H3 RNA Nph Ql NAA+probe

Display Name

FLUAV H3 RNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Influenza A H3, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.52

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Observation

Common Test Rank Get Info

5763

Example Answer List LL2872-1

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H3
• FLUV
• Fowl plague
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

80588-7 Influenza virus A M gene [Presence] in Nasopharynx by NAA with probe detection

Term Description

Detection of targeted nucleic acid sequences in the Influenza A matrix protein (M) gene RNA by PCR-based methods. This term was created for, but not limited in use to, the Verigene® Respiratory Pathogens Flex Nucleic Acid Test (RP Flex), a multiplexed, qualitative test for the detection and identification of multiple viral and bacterial genetic virulence markers from nasopharyngeal swab specimens.
Source: Regenstrief LOINC

Part Descriptions

LP206581-3   Influenza virus A M gene
The matrix protein gene of influenza virus A encodes two proteins: a matrix protein (M1) and an ion channel protein (M2). M1 plays a critical role in virus structure and replication by building connections between the viral lipid membrane and ribonucleoprotein (RNP) core. M1 also binds to RNPs in the nucleus, inhibiting viral transcription. The ion channel (M2) protein spans the lipid bilayer. Source: Regenstrief LOINC

LP206581-3   Influenza virus A M gene
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens. Source: Regenstrief LOINC

LP206581-3   Influenza virus A M gene
The influenza A virus (FLUAV) is a common respiratory virus that infects humans as well as birds, horses, seals, dogs, and pigs. There are eight gene segments that make up the negative single-stranded RNA of the FLUAV. The gene segments are known as PB1, PB2, PA, NP, HA, NA, M, and NS. The M gene is the seventh segment and encodes the M1 (matrix protein) and M2 (membrane) proteins. [https://virologyj.biomedcentral.com/articles/10.1186/1743-422X-6-67] The M1 protein is located beneath the lipid membrane and functions to give support and strength to the viral envelope. The M2 transmembrane protein is an ion channel that assists to uncover the virus once it is inside the host cell. M1 and NP proteins together determine whether the influenza virus is type A, B, or C. M1 brings viral constituents together to the assembly location, playing important roles in the creation of viral particles and in the budding process.[http://www.clinlabnavigator.com/influenza-virus-subtypes.html] Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A M gene

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV M gene Nph Ql NAA+probe

Display Name

FLUAV M gene NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Influenza A M gene, Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73

Order vs. Observation

Both

Common Test Rank Get Info

6590

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV M gene
• FLUV
• Fowl plague
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Matrix protein
• Microbiology
• MP
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

76078-5 Influenza virus A RNA [Presence] in Nasopharynx by NAA with probe detection

Part Descriptions

LP14239-5   Influenza virus A
Influenza viruses, from the family Orthomyxoviridae, are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C are medically relevant to humans. Aquatic birds harboring avian IAV are the likely natural reservoir for all known IAV subtypes and are probably the original source of all human pandemic IAV strains. IAV maintained in wild birds have been associated with stable host switch events to novel hosts, including most often to domestic poultry but also to horses, swine, toothed whales and humans. The influenza virus life cycle begins with the binding of viral HA to host cell receptors. Endocytosis and HA-mediated fusion of the viral and cellular membranes occurs. Viral ribonucleoprotein complexes are released into the cytoplasm, travel to the nucleus, then are replicated and transcribed by the viral polymerase complex. The new viruses are formed and bud when the newly formed ribonucleicprotein complexes and structural proteins reach the plasma membrane. Further research is needed to better understand how IAVs switch hosts and the viral genetic changes that underlie human adaptation. IAV causes respiratory infections in humans ranging from asymptomatic to fatal. Pandemics are attributed to "novel" viruses which possess a viral hemagglutinin (HA) to which humans do not have immunity. PMID: 20542248 ] PMID: 25812763
Influenza viruses A and B are single-stranded RNA enveloped viruses belonging to the Orthomyxoviridae family. The symptoms of infection of Influenza A and B include fever, cough, sore throat, rhinorrhea, nasal congestion, headache, myalgia and malaise. Some patients may experience gastrointestinal symptoms including watery diarrhea, vomiting and abdominal pain. The influenza viruses spread rapidly in enclosed spaces with a documented rate of infection of 70% following a common source of exposure. Infection occurs in the respiratory epithelium in both the upper and lower respiratory tract, and the virus can be found in many specimen types, including nasal aspirates, nasal or nasopharyngeal swabs, throat swabs, sputum and tracheal aspirates. When infection rates reach epidemic proportions, hospitalization of children and elderly patients rises as does the mortality rates of elderly patients.(Manual of Clinical Microbiology, 11th edition, James H. Jorgensen; Karen C. Carroll; Guido Funke; Michael A Pfaller; Marie Louise Landry; Sandra S. Richter; David W. Warnock) Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV RNA Nph Ql NAA+probe

Display Name

FLUAV RNA NAA+probe Ql (Nph)

Consumer Name Alpha Get Info

Influenza A (Flu A), Nasopharynx

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.50

Last Updated

Version 2.73

Change Reason

The PrThr property is used for LOINC terms whose results are reported using an ordered categorical scale, regardless of whether or not an internal threshold was used to make that determination. This change was approved by the Laboratory LOINC Committee in June 2016.

Order vs. Observation

Both

Common Test Rank Get Info

989