82160-3 Adenovirus DNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Adenovirus DNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP14061-3   Adenovirus
Adenoviruses, medium-sized (90-100 nm), non-enveloped icosohedral viruses with double-stranded DNA, have over 50 immunologically distinct types that cause infections in humans. Adenoviruses usually cause respiratory illness with symptoms ranging from the common cold to pneumonia, croup, and bronchitis. Adenoviruses can cause other illnesses such as gastroenteritis, conjunctivitis, cystitis, and less commonly, neurological disease. Infants and individuals with weakened immune systems are at high risk for severe complications of adenovirus infection and adenoviruses commonly cause acute respiratory illness in military recruits. Some asymptomatic people infected with adenoviruses have ongoing infections in their tonsils, adenoids, and intestines and can shed the virus for months or years. The virus can persist outside the body for long periods. Adenovirus infections can be detected using antigen detection, polymerase chain reaction assay, virus isolation, and serology. Typing is usually done by hemagglutination-inhibition and/or neutralization with type-specific antisera or by molecular methods. As of October 2014 there is no adenovirus vaccine for the general public, however an oral vaccine against types 4 and 7 was approved by the U.S. Food and Drug Administration in March 2011 for U.S. military personnel. The vaccine is recommended by the U.S. Department of Defense for military recruits entering basic training in order to prevent acute respiratory disease. Most adenovirus infections are mild and typically require only treatment of symptoms. Source: Centers for Disease Control and Prevention, CDC: Adenovirus

Fully-Specified Name

Component

Adenovirus DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1670

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Adeno virus
• Amplif
• Amplification
• Amplified
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• HAdV
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

87621-9 Bordetella parapertussis IS1001 DNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

The qualitative detection of the IS1001 insertional element DNA sequence of the Bordetella parapertussis genome in nasopharyngeal specimens. This term was created for, but not limited in use to, BioFire Diagnostic FilmArray Respiratory Panel 2 assay, a multiplex PCR-based assay which uses melt curve analysis for the detection of various respiratory tract infection-causing pathogens.

Part Descriptions

LP248336-2   Bordetella parapertussis IS1001
The repetitive insertion sequence targets pIS1001 and hIS1001 are present in multiple copies per genome of Bordetella parapertussis and B. holmesii, respectively. The "p" in pIS1001 is for parapertussis and "h" in hIS1001 is for holmesii. These targets along with other target sequences (e.g. IS481) are used to detect and differentiate between B. pertussis, B. parapertussis, B. holmesii and other Bordetella species. PMID: 21940464 Source: Regenstrief LOINC

Fully-Specified Name

Component

Bordetella parapertussis IS1001 DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.63

Last Updated

Version 2.82 (MIN)

Change Reason

Removed "p" from "pIS1001" in Component to better represent the name of this insertion sequence (IS) element present in various Bordetella species.

Order vs. Observation

Both

Common Test Rank Get Info

2716

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B parap IS1001
• B parapert
• B parapertussis
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Whooping cough

82179-3 Bordetella pertussis.pertussis toxin promoter region [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Bordetella pertussis DNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP206591-2   Bordetella pertussis.pertussis toxin promoter region
The pertussis toxin (PT) promoter region is involved in the regulation of virulence factors for Bordetella pertussis and is a commonly used target for the DNA-based diagnosis of B. pertussis infections. PMID: 10618063 Since the PT promoter region is present in other Bordetella species, including B. parapertussis, generic primers may be used for rapid detection and differentiation of the species. PMID: 8815088 Source: Regenstrief LOINC

Fully-Specified Name

Component

Bordetella pertussis.pertussis toxin promoter region

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Change Reason

Changed Bordetella pertussis toxin to Bordetella pertussis.pertussis toxin for accuracy.

Order vs. Observation

Both

Common Test Rank Get Info

1786

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B pert
• B pert.PT
• B pert.PT Prmt
• B pertussis
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Pertussis
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Whooping cough

85360-6 Bordetella pertussis+bronchiseptica+holmesii IS481 DNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

This test is primarily for the detection of the IS481 insertional element DNA of the Bordetella pertussis genome in human nasopharyngeal swab samples taken from patients suspected of having respiratory tract infection caused by B. pertussis. The IS481 insertion sequence can also be found in B. holmesii and B. bronchiseptica strains, so respiratory infections with either Bordetella pertussis, B. holmesii or B. bronchiseptica may yield positive test results in this assay, which does not differentiate between these strains. Since B. pertussis and B. holmesii present with similar clinical symptoms, additional testing would need to be performed to differentiate between these strains. This term was created for, but not limited in use to, the illumigene Pertussis DNA Amplification Assay, which uses loop-mediated isothermal DNA amplification (LAMP) technology to detect the IS481 insertional element.

Part Descriptions

LP247783-6   Bordetella pertussis+bronchiseptica+holmesii IS481
A repetitive insertion sequence, IS481, has been found to be present in up to 100 copies within the genome of B. pertussis. In B. holmesii, 8-10 copies of this insertion sequence can be found. PMID: 11326023 On rare occasion, the B. bronchiseptica genome may contain a copy of this sequence. Thus, all these species may test positive in assays targeting the IS481 sequence. Concurrent culturing is used to differentiate species from B. pertussis and confirm the organism, while targeted DNA testing allows preliminary results to be reported the same day that the specimen is received. Source: Regenstrief LOINC

Fully-Specified Name

Component

Bordetella pertussis+bronchiseptica+holmesii IS481 DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.61

Last Updated

Version 2.63 (MIN)

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• B pert
• B pert+bron+holm IS481
• B pertussis
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lung
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Pertussis
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• Pulmonary
• Pulmonology
• QBR
• QL
• Qual
• Qualitative
• Random
• Respiratory
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Whooping cough

Third Party Copyright

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This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

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82178-5 Chlamydophila pneumoniae DNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Chlamydophila pneumoniae DNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP14396-3   Chlamydophila pneumoniae
Chlamydophila pneumoniae belongs to the Chlamydiaceae bacterial family. C pneumoniae is a frequent cause of acute respiratory infection, such as, pharyngitis, bronchitis, sinusitis, and community-acquired pneumonia (CAP). It is typically spread by coughing or sneezing, and initial infection usually occurs in school-age children. Most infections are self-limited, but outbreaks can occur in group settings such as schools and barracks. IgG antibodies to C. pneumonia can persist for years after infection. PMID: 22514397 Source: Regenstrief LOINC

Fully-Specified Name

Component

Chlamydophila pneumoniae DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1717

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• C pneum
• C pneumo
• C pneumoniae
• Chlamydia
• Chlamydia pneumoniae
• CPN
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Pneu
• pneum
• Pneumo
• Pneumon
• Pneumonia
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Twar agent

82163-7 Human coronavirus 229E RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Human coronavirus 229E RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP35708-4   Human coronavirus 229E
Human coronavirus 229E (HCoV229E) is a single-stranded, positive-sense, RNA virus species in the Alphacoronavirus genus of the subfamily Coronavirinae, in the family Coronaviridae, of the order Nidovirales. HCoV229E is associated with a range of respiratory symptoms, ranging from the common cold to high-morbidity outcomes such as pneumonia and bronchiolitis. It is also among the Coronaviruses most frequently co-detected with other respiratory viruses. PMID: 20554810 Source: Regenstrief LOINC

Fully-Specified Name

Component

Human coronavirus 229E RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1692

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV 229E
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

88891-7 Human coronavirus 229E+HKU1+NL63+OC43 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

This assay detects nucleic acid sequences from Coronavirus subtypes 229E, HKU1, OC43, and NL63 RNA in nasopharyngeal swabs using PCR and non-probe detection methods, such as melt curve analysis. A single Coronavirus result is reported when any of the four Coronavirus subtypes are detected. This term was created for, but not limited in use to, BioFire Diagnostic FilmArray Respiratory Panel EZ assay.

Part Descriptions

LP263694-4   Human coronavirus 229E+HKU1+NL63+OC43 RNA
Coronaviruses are positive-sense, single-stranded RNA viruses. The envelope of the virus has glycoprotein spikes that give it a crown-like appearance. There are six strains of coronavirus within two subgroups that infect humans. The strains of human coronaviruses that commonly infect people worldwide include 229E and NL63 in the Alpha subgroup and OC43 and HKU1 in the Beta subgroup. These viruses most often cause common cold symptoms, but can also lead to pneumonia. Severe acute respiratory syndrome coronavirus (SARS-CoV) and the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) are less common but cause more severe illness.https://www.cdc.gov/coronavirus/types.htmlhttps://academic.oup.com/cid/article/37/7/929/422314 Source: Regenstrief LOINC

Fully-Specified Name

Component

Human coronavirus 229E+HKU1+NL63+OC43 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.64

Last Updated

Version 2.66 (NAM)

Change Reason

Updated order of analytes in Component from Human coronavirus 229E+HKU1+OC43+NL63 RNA for consistency across terms.

Order vs. Observation

Both

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Corona virus
• CoV 229E+HKU1+NL63+OC43
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV 229E
• HCoV 229E+HKU1+NL63+OC43
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82161-1 Human coronavirus HKU1 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Human coronavirus HKU1 RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP111518-9   Human coronavirus HKU1
Human coronavirus (HCoV) HKU1 was identified in Hong Kong in 2005. It is associated with upper and lower respiratory tract infections. Source: Regenstrief LOINC

LP111518-9   Human coronavirus HKU1
HCoV-HKU1 is a common cause of both upper and lower respiratory tract self-limiting infections, most frequently in young children. Without laboratory diagnosis, typically through reverse transcription polymerase chain reaction (RT-PCR) of respiratory tract samples, HCoV-HKU1 respiratory tract infections cannot be distinguished from infections cause by other respiratory viruses. Treatment is of symptoms and in-line with general guidelines for support of viral respiratory infections. PMID: 21994538 Source: Regenstrief LOINC

Fully-Specified Name

Component

Human coronavirus HKU1 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1691

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV HKU1
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82162-9 Human coronavirus NL63 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Human coronavirus NL63 RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP35709-2   Human coronavirus NL63
Human coronavirus (HCoV-NL63) was first identified in 2004 in a Dutch seven-month old infant with respiratory illness, but is now present world wide. HCoV-NL63 typically infects children and the immunocommpromised, with mild upper respiratory symptoms (cough, runny nose, fever) or more actue lower respiratory tract involvement such as bronchiolitis and croup. It is cause of up to 10% of all respiratory diseases. Most commonly, reverse transcription polymerase chain reaction (RT-PCR) and other nucleic acid tests of nasopharyngeal samples are used for diagnosing coronavirus infections. Source: Regenstrief LOINC

Fully-Specified Name

Component

Human coronavirus NL63 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1690

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV NL63
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82164-5 Human coronavirus OC43 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Human coronavirus OC43 RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP35710-0   Human coronavirus OC43
Coronaviruses, named for the crown-like spikes on their surface, are common viruses that cause mild to moderate upper-respiratory tract illnesses of a short duration. There are four main sub-groupings of coronaviruses, known as alpha, beta, gamma, and delta. The six coronaviruses that can infect humans are: alpha coronaviruses 229E and NL63, and beta coronaviruses OC43, HKU1, SARS-CoV (the coronavirus that causes severe acute respiratory syndrome, or SARS), and MERS-CoV (Middle East Respiratory Syndrome, or MERS). Infections are common with human coronaviruses 229E, NL63, OC43, and HKU1. The exceptions are SARS-CoV and MERS-CoV. SARS-CoV (severe acute respiratory syndrome) was first recognized in China in November 2002 causing a worldwide outbreak from 2002 to 2003. Since 2004, there have no reported cases of SARS-CoV infection. MERS-CoV, first reported in Saudi Arabia in 2012, has caused illness in hundreds of people from several countries. All cases to date have been linked to countries in and near the Arabian Peninsula. Source: Regenstrief LOINC, CDC: Coronavirus

Fully-Specified Name

Component

Human coronavirus OC43 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1693

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV OC43
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82165-2 Human metapneumovirus RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Human metapneumovirus RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP34982-6   Human metapneumovirus
Human metapneumovirus (hMPV) is a Paramyxoviridae family virus that causes upper and lower respiratory tract infections in the very young, elderly and those with compromised immune systems. hMPV can vary in its size, shape and staining properties, and shares similar structure with avian pneumovirus (aMPV) and human respiratory syncytial virus (hRSV). Typically, molecular testing methods, like reverse transcriptase PCR (RT-PCR), are used to detect hMPV. hMPV is thought to be responsible for about 5% to 10% of pediatric hospitalizations of those suffering from acute respiratory tract infection. PMID: 24841931 Source: Regenstrief LOINC

Fully-Specified Name

Component

Human metapneumovirus RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1671

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• DNA NUCLEIC ACID PROBE
• DNA probe
• hMPV
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82168-6 Influenza virus A H1 2009 pandemic RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Influenza virus A H1 2009 pandemic RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP94776-9   Influenza virus A H1 2009 pandemic
An influenza virus that had never been identified as a cause of infections in people before the 2009 H1N1 (Swine flu) pandemic. Genetic analyses of this virus showed that it originated from animal influenza viruses and was unrelated to the human seasonal H1N1 viruses that had been in general circulation among people since 1977. Antibodies to the seasonal H1N1 virus did not protect against the pandemic H1N1 virus, however a significant percentage of people age 65 and older had some immunity against the pandemic virus. After early outbreaks in North America in April 2009 the new influenza virus spread rapidly around the world. Unlike typical seasonal flu patterns, the new virus caused high levels of summer infections in the northern hemisphere, and then even higher levels of activity during cooler months. The virus also led to patterns of death and illness not normally seen in influenza infections. Most of the deaths occurred among younger people, including those who were otherwise healthy. Source: Regenstrief LOINC, WHO: What is the pandemic (H1N1) 2009 virus?

Fully-Specified Name

Component

Influenza virus A H1 2009 pandemic RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.73 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1705

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H1
• FLUAV H1 2009 pand
• FLUV
• Fowl plague
• H1N1
• H1N1v
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• Influenza virus A hemagglutinin H1 swine origin
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• S-OIV
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82167-8 Influenza virus A H1 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Influenza virus A H1 RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP35168-1   Influenza virus A H1
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens. Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A H1 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1704

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H1
• FLUV
• Fowl plague
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82169-4 Influenza virus A H3 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Influenza virus A H3 RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP35176-4   Influenza virus A H3
The influenza virus A (FLUVA) genome is composed of eight gene segments (PB2, PB1, PA, HA, NP, NA, M, NS1) that code for 11 proteins. Two of the genes, hemagglutinin (HA) and neuraminidase (NA), determine the structure of the two primary surface proteins of influenza viruses. The HA and NA gene sequences are used to determine the Influenza virus subtype. Currently there are 16 subtypes of HA and 9 subtypes of NA known, but only H 1, 2 and 3, and N 1 and 2 are commonly found in humans. PMID: 17458769 The M gene segment, which encodes two matrix proteins (M1 and M2), may also be used as a target in PCR-based assays for detection of FLUVA in various specimens. Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A H3 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1706

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H3
• FLUV
• Fowl plague
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82166-0 Influenza virus A RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Influenza virus A RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP14239-5   Influenza virus A
Influenza viruses, from the family Orthomyxoviridae, are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C are medically relevant to humans. Aquatic birds harboring avian IAV are the likely natural reservoir for all known IAV subtypes and are probably the original source of all human pandemic IAV strains. IAV maintained in wild birds have been associated with stable host switch events to novel hosts, including most often to domestic poultry but also to horses, swine, toothed whales and humans. The influenza virus life cycle begins with the binding of viral HA to host cell receptors. Endocytosis and HA-mediated fusion of the viral and cellular membranes occurs. Viral ribonucleoprotein complexes are released into the cytoplasm, travel to the nucleus, then are replicated and transcribed by the viral polymerase complex. The new viruses are formed and bud when the newly formed ribonucleicprotein complexes and structural proteins reach the plasma membrane. Further research is needed to better understand how IAVs switch hosts and the viral genetic changes that underlie human adaptation. IAV causes respiratory infections in humans ranging from asymptomatic to fatal. Pandemics are attributed to "novel" viruses which possess a viral hemagglutinin (HA) to which humans do not have immunity. PMID: 20542248 ] PMID: 25812763
Influenza viruses A and B are single-stranded RNA enveloped viruses belonging to the Orthomyxoviridae family. The symptoms of infection of Influenza A and B include fever, cough, sore throat, rhinorrhea, nasal congestion, headache, myalgia and malaise. Some patients may experience gastrointestinal symptoms including watery diarrhea, vomiting and abdominal pain. The influenza viruses spread rapidly in enclosed spaces with a documented rate of infection of 70% following a common source of exposure. Infection occurs in the respiratory epithelium in both the upper and lower respiratory tract, and the virus can be found in many specimen types, including nasal aspirates, nasal or nasopharyngeal swabs, throat swabs, sputum and tracheal aspirates. When infection rates reach epidemic proportions, hospitalization of children and elderly patients rises as does the mortality rates of elderly patients.(Manual of Clinical Microbiology, 11th edition, James H. Jorgensen; Karen C. Carroll; Guido Funke; Michael A Pfaller; Marie Louise Landry; Sandra S. Richter; David W. Warnock) Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1673

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUV
• Fowl plague
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82170-2 Influenza virus B RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Influenza virus B RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP14240-3   Influenza virus B
Influenza virus from the family Orthomyxoviridae are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C viruses are medically relevant to humans. Influenza A and B viruses have a similar structure whereby these viruses each contain eight discrete single-stranded RNA gene segments, each encoding at least one protein. While having a close phylogenetic relationship, influenza virus types A and B manifest very differently. While IAV infects birds, humans and other mammals, influenza B only infects humans and seals. Although both viruses cause human respiratory infection seasonally in temperate climate regions and more continually in the tropics, influenza B is normally less prevalent and causes less severe disease than IAV viruses. Research is ongoing to determine the evolutionary and epidemiological factors that shape the genetic diversity of influenza B virus. PMID: 25812763 [CDC:flu/about/viruses/types] Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus B RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1669

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUB
• FLUBV
• FLUV
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza B
• Influenza B virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

88889-1 Middle East respiratory syndrome coronavirus (MERS-CoV) RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

This assay detects nucleic acid sequences from Middle east respiratory syndrome coronavirus (MERS-CoV) RNA in nasopharyngeal swabs using PCR and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, BioFire Diagnostic FilmArray Respiratory Panel 2 Plus assay.

Part Descriptions

LP173753-7   Middle East respiratory syndrome coronavirus
Middle East Respiratory Syndrome (MERS) is an illness caused by the virus Middle East Respiratory Syndrome Coronovirus (MERS-CoV). The illness was first reported in Saudi Arabia in 2012, but was later found to have originated in Jordan in 2012. MERS has been found in camels leading to speculation that they may be the initial reservoir for the virus. The largest outbreak of MERS that has occurred outside of the Arabian Peninsula was in the Republic of Korea in 2015 and was linked to an individual who had been traveling in the Arabian Peninsula. The virus is probably spread through respiratory secretions from infected individuals though the exact mode of transmission is under investigation. Infection with MERS begins with an incubation period of 5-6 days followed by a severe acute illness that involves fever, shortness of breath and for patients with comorbidities or reduced immunity can lead to pneumonia and kidney failure. The mortality rate of MERS is 3-4 out of 10 people who are infected, though most of the people who die have underlying conditions. In addition, some people experience only cold-like symptoms and others have no symptoms at all. In the United States, most state laboratories are approved to test for MERS-CoV using the real-time reverse transcription-PCR assay developed by the CDC. The assay can be run on respiratory, serum and stool specimens.[CDC: coronavirus/mers] Source: Regenstrief LOINC

Fully-Specified Name

Component

Middle east respiratory syndrome coronavirus RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.64

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Camel flu
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV-EMC/2012
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lung
• MERS-CoV
• MERS-CoV RNA
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• Pulmonary
• Pulmonology
• QBR
• QL
• Qual
• Qualitative
• Random
• Respiratory
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82177-7 Mycoplasma pneumoniae DNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Mycoplasma pneumoniae DNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP14249-4   Mycoplasma pneumoniae
Mycoplasma pneumoniae is a filamentous cell without a cell well. It has an attachment organelle at its tip with protein adhesions which attach to sialoglycoproteins or sialoglycolipid receptors on the tracheal epithelium. Pneumonia is induced by local immunologic and phagocytic responses.
Mycoplasmas generally are the smallest self-replicating organisms possessing the smallest genomes (500 to 1000 genes). Mycoplasmas have several surface antigens; antibodies to these surface antigens inhibit their growth. While various serological tests have been developed and are useful in classification, the infections are persistent, frequently difficult to detect and difficult to cure. Mycoplasma pneumonaie infection affects the upper and lower respiratory tracts. Symptoms including cough, fever and headache may persist for several weeks. Infection occurs worldwide and affects mainly children five to nine years old. [NCBI Books:NBK7637] Source: Regenstrief LOINC

Fully-Specified Name

Component

Mycoplasma pneumoniae DNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1679

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• Enzootic pneumonia
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• M pneumo
• M pneumonia
• M pneumoniae
• Microbiology
• Myco
• Myco pneu
• Mycoplas
• Mycoplasm
• Mycoplasmoides pneumoniae
• Mycoplasmosis
• Mycoplsm
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Pneu
• pneum
• Pneumo
• Pneumon
• Pneumonia
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82171-0 Parainfluenza virus 1 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Parainfluenza virus 1 RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP14241-1   Parainfluenza virus 1
HPIV-1 causes biennial outbreaks of croup in the fall (presently in the United States during odd numbered years). HPIVs are negative-sense, single-stranded RNA viruses that possess fusion and hemagglutinin-neuraminidase glycoprotein "spikes" on their surface. HPIVs are spread from respiratory secretions through close contact with infected persons or contact with contaminated surfaces or objects. HPIVs are ubiquitous and infect most people during childhood. Source: Regenstrief Institute

Fully-Specified Name

Component

Parainfluenza virus 1 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1694

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• DNA NUCLEIC ACID PROBE
• DNA probe
• HPIV
• HPIV1
• Human respirovirus 1
• i
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• Para
• Parainflu
• Parainfluenza type 1
• Parainfluenza type I
• PCR
• PI1
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

88890-9 Parainfluenza virus 1+2+3+4 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

This assay detects RNA from Parainfluenza virus types 1-4 in nasopharyngeal swabs using PCR and non-probe detection methods, such as melt curve analysis. A single Parainfluenza virus result is reported when any of the four subtypes are detected. This term was created for, but not limited in use to, BioFire Diagnostic FilmArray Respiratory Panel EZ assay.

Part Descriptions

LP145690-6   Parainfluenza virus 1+2+3+4
Human parainfluenza viruses (HPIVs) have been recognized as a cause of respiratory tract infections for many decades. They belong to the Paramyxoviridae family, subfamily Paramyxovirinae, and are classified into 4 serotypes. Serotype 4 can be further subdivided into 2 antigenic subtypes, HPIV-4A and HPIV-4B. Source: Centers for Disease Control and Prevention, CDC

LP145690-6   Parainfluenza virus 1+2+3+4
Parainfluenza virus is from the family Paramyxoviridae and the genera Paramyxovirus which includes the parainfluenza viruses and the mumps virus. Paramyxoviruses are particles up to 300 nm in diameter. They are spiral, tube-like symmetrical nucleocapsids which contain a monopartite, single-stranded, negative-sense RNA genome and an RNA-directed RNA polymerase. There is a matrix protein at the base of a double-layered lipid envelope which contains spikes with two glycoproteins, a viral attachment protein and a fusion protein. The viral protein spikes in parainfluenza viruses have hemagglutinating and neuraminidase activities. As all paramyxoviruses are labile, they are quickly inactivated (e.g., by heat, detergents, ultraviolet light). Primary infections occur in young children and cause mild or severe upper and lower respiratory tract infections. Reinfection is common and results in milder manifestation. Transmission is by direct contact or by droplets. Parainfluenza virus diseases are usually endemic although they can be epidemic. [NCBI Books:NBK8461] Source: Regenstrief LOINC

Fully-Specified Name

Component

Parainfluenza virus 1+2+3+4 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.64

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• DNA NUCLEIC ACID PROBE
• DNA probe
• HPIV
• HPIV 1+2+3+4
• HPIV 1+2+3+4 RNA
• HPIV1
• HPIV1+2+3
• Human respirovirus 1
• i
• ID
• II
• III
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Microbiology
• NAA+n-prb
• NAA+probe
• NAAT
• NASBA
• Nasopharynx
• Nucleic acid sequence based analysis
• Ordinal
• Para
• Parainflu
• Parainfluenza type 1
• Parainfluenza type I
• PCR
• PI1
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• Screen
• SDA
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

82172-8 Parainfluenza virus 2 RNA [Presence] in Nasopharynx by NAA with non-probe detection

Term Description

Qualitative detection of nucleic acid sequences in Parainfluenza virus 2 RNA in nasopharyngeal swabs by target amplification and non-probe detection methods, such as melt curve analysis. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Respiratory Panel (RP) v1.7.

Part Descriptions

LP14242-9   Parainfluenza virus 2
Human parainfluenza viruses (HPIVs) are a group of four distinct serotypes of single-stranded RNA viruses belonging to the paramyxovirus family. They are the second most common cause of lower respiratory tract infection in younger children. Repeated infection throughout the life of the host is not uncommon. Symptoms of later breakouts include upper respiratory tract illness as in a cold and sore throat. The incubation period of all four serotypes is 1 to 7 days. Parainfluenza viruses can be detected via cell culture, immunofluorescent microscopy, and PCR. Though no vaccines currently exist, research into vaccines for HPIV-1, -2, and -3 is underway. Parainfluenza viruses last only a few hours in the environment and are inactivated by soap and water. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Parainfluenza virus 2 (Wikipedia)

Fully-Specified Name

Component

Parainfluenza virus 2 RNA

Property

PrThr

Time

Pt

System

Nph

Scale

Ord

Method

Non-probe.amp.tar

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.82 (MIN)

Order vs. Observation

Both

Common Test Rank Get Info

1695