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Term Description

Qualitative detection of nucleic acid sequences in the Salmonella enterica and bongori DNA in stool specimens by PCR and non-probe detection methods, such as melt curve analysis. This assay cannot differentiate between the two Salmonella species. This term was created for, but not limited in use to, the submitter's test kit, FilmArray Gastrointestinal Panel (GI) v2.1.

Part Description

LP217212-2   Salmonella enterica+bongori
Salmonella are gram-negative, flagellated, facultative intracellular, anaerobic bacilli with O, H and Vi surface antigens. Once ingested, Salmonella survives the gastric acid barrier and penetrates the epithelial cells of the small and large intestines. The invasion of the epithelial cells stimulates the release of cytokines and a subsequent inflammatory response leading to diarrhea and possible ulceration of the mucosa.[NCBI Books: 8435] Antibodies to Salmonella are the body's defense when the bacteria is outside of its host cell which occurs at the initial infection and when the bacillus moves from cell to cell. There is a 10 minute window of opportunity when the Salmonella bacillus leaves the macrophage to invade another. During that time, antibodies and complement work to eradicate the bacilli, but some of the extracellular bacilli will evade attack and enter another host cell. Studies have shown that vaccines play an important role in the fight against typhoid fever. PMID: 25566248 There are two species of Salmonella: S. enterica and S. bongori. These species can be further subclassified into subspecies and serovars.

Veterinary Medicine:
Salmonella infection is most often caused by the serovars Salmonella choleraesuis, and Salmonella typhimurium and less often by Salmonella derby. Infected pigs can be asymptomatic and become carriers of S. choleraesius. Typically, the bacteria survive in the mesenteric lymph nodes that drain into the intestines, and are not shed in the feces unless the pig is under stress. The carrier state lasts for weeks to months and is self-limiting. Severe infection with S. choleraesius can be serious starting out as septicemia and progressing to pneumonia and enteritis. The infection can spread to various tissues including to the central nervous system leading to meningitis and to the joints where it manifests as arthritis. Severe infections with S. choleraesius occurs at any age, but most often in pigs 12-14 weeks of age.http://www.thepigsite.com/pighealth/article/357/salmonellosis/ Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Salmonella enterica+bongori DNA:PrThr:Pt:Stool:Ord:Non-probe.amp.tar
Long Common Name
Salmonella enterica+bongori DNA [Presence] in Stool by NAA with non-probe detection
Short Name
S ent+bong DNA Stl Ql NAA+n-prb
Display Name
S. enterica+bongori DNA NAA+non-probe Ql (Stl)
Consumer Name Alpha Get Info
Salmonella enterica+bongori, Stool

Part Model Get Info

  • Component
    Salmonella enterica+bongori DNA
    LP217211-4
    • Analyte
      Salmonella enterica+bongori DNA
      LP217211-4
      • Component Numerator
        Salmonella enterica+bongori DNA
        LP217211-4
        • Component Numerator Core
          Salmonella enterica+bongori
          LP217212-2
        • Component Numerator Core Suffix
          DNA
          LP32416-7
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    Stool
    LP7604-4
    • System Core
      Stool
      LP7604-4
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Non-probe.amp.tar
    LP208998-7

Example Answer List: LL744-4

Source: Regenstrief Institute
AnswerCodeScoreAnswer ID
DetectedLA11882-0
Not detectedLA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.56
Last Updated
Version 2.82 (MIN)
Order vs. Observation
Both
Common Test Rank Get Info
1270

Member of these Panels

LOINCLong Common Name
114501-0Gastrointestinal pathogens 11-plexA DNA and RNA panel - Stool
114488-0Gastrointestinal pathogens 22-plexA DNA and RNA panel - Stool by NAA with non-probe detection
82195-9Gastrointestinal pathogens DNA and RNA panel - Stool by NAA with non-probe detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Salmonella enterica+bongori DNA:Přítomnost nebo práh:Časový bod:Stolice:Ordinální:Amplifikace nukleových kyselin s detekcí bez sondy
de-DEGerman (Germany)Salmonella enterica+bongori DNA:Nachweis oder Schwellenwert:Zeitpunkt:Stuhl:Ordinal:Zielfragmentamplifikation mit Detektion ohne Sonde
el-GRGreek (Greece)Βακτήριο Salmonella enterica+bongori (Σαλμονέλλα) DNA:PrThr:Pt:Κόπρανα:Ord:Χωρίς ανιχνευτή.ενίσχυση.στόχου
Synonyms: DNA MICRO Ord PrThr Pt Salmonella enterica (Σαλμονέλλα) Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Βακτήριο Salmonella enterica+bongori (Σαλμονέλλα) Κόπρανα Χωρίς ανιχνευτή.ενίσχυση.στόχου
es-ESSpanish (Spain)Salmonella enterica+bongi ADN:PrThr:Punto temporal:Heces:Ord:Amplificación del objetivo no basado en sonda
es-MXSpanish (Mexico)Salmonella enterica + ADN bongori:Presencia o umbral:Punto temporal:Heces:Ordinal:Amplificación de ácidos nucleicos con detección sin sonda
fr-FRFrench (France)Salmonella enterica+bongori ADN:Présence/Seuil:Ponctuel:Selle:Qualitatif:Non-PCR amplification de cible
it-ITItalian (Italy)Salmonella enterica+bongori DNA:PrThr:Pt:Feci:Ord:Non-sonda.amp.tar
Synonyms: Amplificazione target non basata su sonda Microbiologia Presenza o Soglia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
pl-PLPolish (Poland)Salmonella enterica+bongori DNA:granica wykrywalności:punkt w czasie:kał:uporządkowany:bez sondy.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją bez użycia sondy amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Kwas deoksyrybonukleinowy
zh-CNChinese (China)肠道沙门菌+邦戈尔沙门菌 DNA:存在情况或阈值:时间点:大便:序数型:非探针法.基因扩增.靶向
Synonyms: 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 便;大肠运动;排便;粪便;肠运动 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 借助靶向扩增的非探针方法;借助靶向扩增的非探针法;非探针法.扩增.靶向 去氧核糖核酸;脱氧核糖核酸 去氧核糖核酸;脱氧核糖核酸;脱氧核糖核酸（Deoxyribonucleic acid，DNA） 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 沙门氏菌属 经过扩增的 肠道沙门氏菌;沙门氏菌;肠沙门氏菌;肠沙门菌 肠道沙门菌（肠道沙门氏菌、肠沙门菌、肠沙门氏菌）+邦戈尔沙门菌（邦戈尔沙门氏菌、邦戈尔氏沙门氏菌、邦戈尔氏沙门菌） 脱氧核糖核酸探针

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CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=82199-1