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Term Description

Targeted PCR-based analysis of nucleic acids within the spike (S) gene specific to the prototype strain of the Porcine epidemic diarrhea virus (PEDV) and reported as a cross threshold (Ct) value. This assay is performed on various specimens, including fresh tissues (intestine), fluids (feces, intestinal content, oral fluid), fecal swabs, and other miscellaneous specimens (environmental, feed, feed pre-mix). This term was created for, but not limited in use to, the submitter's PEDV S gene Prototype differential PCR, which targets the highly conserved regions of the PEDV S gene in order to differentiate between the two strains of PEDV know to be circulating in North America: the original US strain (US PEDV prototype), represented by this term, and the variant US strain (S INDEL variant) LOINC 85355-6.

LOINC Names Get Info

Fully-Specified Name
Porcine epidemic diarrhea virus prototype strain S gene:ThreshNum:Pt:XXX:Qn:Probe.amp.tar
Long Common Name
PEDV prototype strain S gene [Cycle Threshold #] in Specimen by NAA with probe detection
Short Name
PEDV proto S Ct Spec Qn NAA+probe
Display Name
PEDV prototype strain S gene NAA+probe (Specimen) [ThreshNum]
Consumer Name Alpha Get Info
PEDV Prototype Strain S gene, Specimen

Part Model Get Info

  • Component
    Porcine epidemic diarrhea virus prototype strain S gene
    LP247769-5
    • Analyte
      Porcine epidemic diarrhea virus prototype strain S gene
      LP247769-5
      • Component Numerator
        Porcine epidemic diarrhea virus prototype strain S gene
        LP247769-5
        • Component Numerator Core
          Porcine epidemic diarrhea virus prototype strain S gene
          LP247769-5
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    ThreshNum
    LP188772-0
  • Time
    Pt
    LP6960-1
  • System
    XXX
    LP7735-6
    • System Core
      XXX
      LP7735-6
    • Super System
      NULL
       
  • Scale
    Qn
    LP7753-9
  • Method
    Probe.amp.tar
    LP6464-4

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.61
Last Updated
Version 2.69 (MIN)
Order vs. Observation
Both

Member of these Panels

LOINCLong Common Name
85357-2PEDV prototype and S INDEL strain S gene panel - Specimen by NAA with probe detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)PEDV gen prototypového kmene S:Prahová hodnota:Časový bod:XXX:Kvantitativní:Amplifikace nukleových kyselin s detekcí sondou
el-GRGreek (Greece)Γονίδιο S πρωτοτύπου στελέχους ιού επιδημικής διάρροιας των χοίρων:ThreshNum:Pt:XXX:Qn:Ανιχνευτής.ενίσχυση.στόχου
Synonyms: MICRO Pt Qn S ThreshNum XXX Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο S πρωτοτύπου στελέχους ιού επιδημικής διάρροιας των χοίρων Ιός Ιός επιδημικής διάρροιας των χοίρων Των χοίρων
es-ESSpanish (Spain)Cepa S del gen prototipo del virus de la diarrea epidémica porcina:ThreshNnum:Punto temporal:XXX:Qn:Sonda con amplificación dirigida
Synonyms: Cuantitativo
es-MXSpanish (Mexico)Gen prototipo de la cepa S del virus de la diarrea epidémica porcina:ThreshNum:Punto temporal:XXX:Cuantitativo:Amplificación de ácidos nucleicos con detección de sonda
it-ITItalian (Italy)Virus della diarrea epidemica suina, specie prototipo gene S:Thresnum:Pt:XXX:Qn:Sonda.amp.tar
Synonyms: Gene prototipo variante S di virus PED Limite di soglia Microbiologia Punto nel tempo (episodio) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA Virus PED
pl-PLPolish (Poland)Wirus epidemii biegunki świń szczep prototypowy S gen:wartość progowa:punkt w czasie:XXX:ilościowy:sonda.amplifikacja.cel
Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Gen S wirusa epidemii biegunki świń szczepu prototypowego
zh-CNChinese (China)猪流行性腹泻病毒原始毒株 S 基因:阈值循环圈数:时间点:XXX:定量型:探针法.基因扩增.靶向
Synonyms: S 型 下痢;泄泻;下利;泻肚 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 传染毒;传染毒素;滤过性病原体;病毒类;过滤性病原体 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 可用数量表示的;定量性;数值型;数量型;连续数值型标尺 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 扩增型 扩增性 时刻;随机;随意;瞬间 猪传染性腹泻病毒;PEDv 猪流行性腹泻病毒（猪传染性腹泻病毒、PEDv）原始毒株（株、分离株） S 基因 猪的 猪科 猪科的 界值数;界限数;阀值数;临界值数;阈值循环数;阈值数;达到阈值时的循环圈数;荧光信号到达设定阈值时所经历的循环数;Ct 值;Cycle threshold;循环阈值 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

Example Units

UnitSource
{Ct_value}Example UCUM Units

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=85356-4