Version 2.77

Term Description

This test sequences the 65 kD heat shock protein gene (hsp65) to identify the species of Mycobacterium in an isolate. The term was created for but not limited to a method based on sequencing the hsp65 gene.
Source: Regenstrief LOINC

Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP39075-4   Mycobacterium sp identified
Mycobacterium (a genus of Actinobacteria in family Mycobacteriaceae) includes pathogens known to cause serious diseases in mammals, including tuberculosis (M. tuberculosis) and leprosy (M. leprae). Lesser known disorders include mycobacterium avium complex (MAC) and hypersensitivity pneumonitis among others. Mycobacterium are aerobic non-motile Gram-positive, classified as an acid-fast Gram positive straight or slightly curved rods. Many species adapt readily to growth on very simple substrates while other species can be very difficult to culture (fastidious). A natural division occurs between slowly and rapidly growing species; Mycobacteria that form colonies clearly visible to the naked eye within seven days on subculture are termed rapid growers, while those requiring longer periods are slow growers. Mycobacteria are widespread organisms, typically living in water and food sources. Some, however, including the tuberculosis and the leprosy organisms, are obligate parasites and are not found as free-living members of the genus. Mycobacterial infections are notoriously difficult to treat. Source: Regenstrief LOINC, Wikipedia: Mycobacterium

Fully-Specified Name

Component
Mycobacterium sp identified
Property
Prid
Time
Pt
System
Isolate
Scale
Nom
Method
Sequencing

Additional Names

Short Name
Mycobacterium Islt Seq
Display Name
Mycobacterium sp identified Sequencing Nom (Isol)
Consumer Name Alpha Get Info
Mycobacterium sp test

Example Answer List: LL1737-7

Source: Association of Public Health Laboratories
Answer Code Score Answer ID
Mycobacterium abscessus LA16933-6
Mycobacterium avium/intracellulare LA16934-4
Mycobacterium tuberculosis complex LA16935-1
Unidentified non-tuberculous mycobacteria LA16936-9
Not mycobacteria LA16937-7
Mycobacterium leprae

Leprosy

 LA28425-9
Mycobacterium microti LA28426-7
Mycobacterium bovis LA19286-6
Mycobacterium asiaticum LA28427-5
Mycobacterium tuberculosis LA20996-7

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.63
Last Updated
Version 2.63
Order vs. Observation
Both

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) Mycobacterium sp identifiziert:Nachweis oder Identität:Zeitpunkt:Isolat:Nominal:Sequenzierung
es-ES Spanish (Spain) Micobacteria sp identificado:Presencia o identidad:Punto temporal:Aislado:Nom:Secuenciación
es-MX Spanish (Mexico) Mycobacterium sp identificado:Presencia o identidad:Punto temporal:Aislado:Nominal:Secuenciación
fr-CA French (Canada) Mycobacterium sp , Identifiés:Présence ou identité:Temps ponctuel:Isolat:Nominal:Séquençage
fr-FR French (France) Mycobacterium identifié:Identification:Ponctuel:Isolat:Résultat nominal:Séquençage
fr-BE French (Belgium) Mycobacterium sp Identifiées:Présence ou identité:Temps ponctuel:Isolat:Nominal:Séquençage
Synonyms: Identifiées
it-IT Italian (Italy) Mycobacterium sp , identificato:Prid:Pt:Isolato:Nom:Sequenziamento
Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio)
nl-NL Dutch (Netherlands) Mycobacterium sp. geïdentificeerd:identificator:moment:isolaat:nominaal:sequencing
tr-TR Turkish (Turkey) Mycobacterium sp tanımlanmış:MevcKimlik:Zmlı:İzolat:Snf:Sekanslama
Synonyms: Dizi tayini
zh-CN Chinese (China) 分枝杆菌属单个未知种 已鉴定的:存在与否或特征标识:时间点:分离株:名义型:序列测定
Synonyms: AFB 分支杆菌 分支杆菌;分支杆菌属;分枝杆菌;劳瘵;痨;痨病;结核;结核病;肺结核;分枝杆菌单个未知种 分支杆菌属 分枝杆菌属 分离出的;分离的;已分离的;检出的;经分离的;经过分离的;经过鉴定的;经鉴定的;鉴定的 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 劳瘵 存在;存在与否;特征标识;身份;身份标识 已鉴定的分支杆菌 已鉴定的分支杆菌属 已鉴定的分枝杆菌 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 抗酸 抗酸杆菌 抗酸杆菌（Acid fast bacillus，AFB） 抗酸菌 时刻;随机;随意;瞬间 物种 生物种 痨 痨病 结核 结核病 肺结核

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=88183-9