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Term Description

This test sequences the 65 kD heat shock protein gene (hsp65) to identify the species of Mycobacterium in an isolate. The term was created for but not limited to a method based on sequencing the hsp65 gene.

Part Description

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Mycobacterium sp:Prid:Pt:Isolate:Nom:Sequencing
Long Common Name
Mycobacterium sp identified in Isolate by Sequencing
Short Name
Mycobacterium Islt Seq
Display Name
Mycobacterium sp identified Sequencing Nom (Isol)
Consumer Name Alpha Get Info
Mycobacterium sp test

Part Model Get Info

  • Component
    Mycobacterium sp
    LP18667-3
    • Analyte
      Mycobacterium sp
      LP18667-3
      • Component Numerator
        Mycobacterium sp
        LP18667-3
        • Component Numerator Core
          Mycobacterium sp
          LP18667-3
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Prid
    LP6850-4
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Example Answer List: LL1737-7

Source: Association of Public Health Laboratories
AnswerCodeScoreAnswer ID
Mycobacterium abscessusLA16933-6
Mycobacterium avium/intracellulareLA16934-4
Mycobacterium tuberculosis complexLA16935-1
Unidentified non-tuberculous mycobacteriaLA16936-9
Not mycobacteriaLA16937-7
Mycobacterium leprae

Leprosy

LA28425-9
Mycobacterium microtiLA28426-7
Mycobacterium bovisLA19286-6
Mycobacterium asiaticumLA28427-5
Mycobacterium tuberculosisLA20996-7

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.63
Last Updated
Version 2.78 (NAM)
Change Reason
Release 2.78: COMPONENT: Removed "Identified" from the component because it is implied by the Property "Prid";
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Mycobacterium sp:Přítomnost nebo identita:Časový bod:Izolát:Nominální:Sekvenace
de-DEGerman (Germany)Mycobacterium sp:Nachweis oder Identität:Zeitpunkt:Isolat:Nominal:Sequenzierung
el-GRGreek (Greece)Mycobacterium sp (Μυκοβακτηρίδιο):Prid:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: MICRO Mycobacterium sp (Μυκοβακτηρίδιο) Nom Prid Pt Αλληλούχιση Απομονωμένο στέλεχος
es-ESSpanish (Spain)Micobacteria sp:Presencia o identidad:Punto temporal:Aislado:Nom:Secuenciación
es-MXSpanish (Mexico)Mycobacterium sp identificado:Presencia o identidad:Punto temporal:Aislado:Nominal:Secuenciación
fr-CAFrench (Canada)Mycobacterium sp:Présence ou identité:Temps ponctuel:Isolat:Nominal:Séquençage
fr-FRFrench (France)Mycobacterium:Identification:Ponctuel:Isolat:Résultat nominal:Séquençage
fr-BEFrench (Belgium)Mycobacterium sp:Présence ou identité:Temps ponctuel:Isolat:Nominal:Séquençage
it-ITItalian (Italy)Mycobacterium sp:Prid:Pt:Isolato:Nom:Sequenziamento
Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio)
nl-NLDutch (Netherlands)Mycobacterium sp.:identificator:moment:isolaat:nominaal:sequencing
pl-PLPolish (Poland)Mycobacterium sp:obecność lub identyfikacja:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: wynik kategorialny
tr-TRTurkish (Turkey)Mycobacterium sp:MevcKimlik:Zmlı:İzolat:Snf:Sekanslama
Synonyms: Dizi tayini
zh-CNChinese (China)分枝杆菌属单个未知种:存在与否或特征标识:时间点:分离株:名义型:序列测定
Synonyms: AFB 分支杆菌 分支杆菌;分支杆菌属;分枝杆菌;劳瘵;痨;痨病;结核;结核病;肺结核;分枝杆菌单个未知种 分支杆菌属 分枝杆菌属 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 劳瘵 存在;存在与否;特征标识;身份;身份标识 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 抗酸 抗酸杆菌 抗酸杆菌（Acid fast bacillus，AFB） 抗酸菌 时刻;随机;随意;瞬间 物种 生物种 痨 痨病 结核 结核病 肺结核

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=88183-9