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Term Description

This term is used to report the specific species within the Mycobacterium tuberculosis complex that was identified, such as M. bovis.

Part Description

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Mycobacterium tuberculosis complex species:Prid:Pt:XXX:Nom:Sequencing
Long Common Name
Mycobacterium tuberculosis complex species identified in Specimen by Sequencing
Short Name
MTB complex sp Spec Seq
Display Name
M. tuberculosis complex sp identified Sequencing Nom (Specimen)
Consumer Name Alpha Get Info
Mycobacterium tuberculosis complex species test, Specimen

Part Model Get Info

  • Component
    Mycobacterium tuberculosis complex species
    LP344922-2
    • Analyte
      Mycobacterium tuberculosis complex species
      LP344922-2
      • Component Numerator
        Mycobacterium tuberculosis complex species
        LP344922-2
        • Component Numerator Core
          Mycobacterium tuberculosis complex species
          LP344922-2
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Prid
    LP6850-4
  • Time
    Pt
    LP6960-1
  • System
    XXX
    LP7735-6
    • System Core
      XXX
      LP7735-6
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Example Answer List: LL4779-6

AnswerCodeScoreAnswer ID
Mycobacterium africanumLA28506-6
Mycobacterium bovisLA19286-6
Mycobacterium tuberculosisLA20996-7
No sequenceLA28507-4
Not detectedLA11883-8

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.66
Last Updated
Version 2.79 (NAM)
Change Reason
Release 2.79: COMPONENT: Triggered by the coll w SCT:The understanding is that the word "identified" refers to the property "PRID", its presence in the component is redundant to the property. Therefore it is better to remove "identified" from the component.;
Order vs. Observation
Both

Member of these Panels

LOINCLong Common Name
94541-0Mycobacterial identification panel - Specimen by Molecular genetics method

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Mycobacterium tuberculosis complex sp identifikovaný:Přítomnost nebo identita:Časový bod:XXX:Nominální:Sekvenace
de-DEGerman (Germany)Mycobacterium-tuberculosis-Komplex-Spezies:Nachweis oder Identität:Zeitpunkt:XXX:Nominal:Sequenzierung
el-GRGreek (Greece)Είδη συμπλέγματος Mycobacterium tuberculosis (Μυκοβακτηρίδιο της φυματίωσης):Prid:Pt:XXX:Nom:Αλληλούχιση
Synonyms: MICRO Mycobacterium tuberculosis (Μυκοβακτηρίδιο της φυματίωσης) Nom Prid Pt XXX Αλληλούχιση Είδη συμπλέγματος Mycobacterium tuberculosis (Μυκοβακτηρίδιο της φυματίωσης) Σύμπλεγμα Mycobacterium tuberculosis (Μυκοβακτηρίδιο της φυματίωσης)
es-ESSpanish (Spain)Especis complejas de Mycobacterium tuberculosis:Presencia o identidad:Punto temporal:XXX:Nom:Secuenciación
es-MXSpanish (Mexico)Especies del complejo Mycobacterium tuberculosis identificadas:Presencia o identidad:Punto temporal:XXX:Nominal:Secuenciación
fr-FRFrench (France)Mycobacterium tuberculosis complex espèces:Identification:Ponctuel:Milieux divers:Résultat nominal:Séquençage
it-ITItalian (Italy)Mycobacterium tuberculosis complex, specie:Prid:Pt:XXX:Nom:Sequenziamento
Synonyms: Complesso di micobatteri della tubercolosi Micobatterio della tubercolosi Microbiologia Presenza o Identità Punto nel tempo (episodio) Specie del mycobacterium tuberculosis complex
nl-NLDutch (Netherlands)Mycobacterium tuberculosis complex sp.:identificator:moment:XXX:nominaal:sequencing
pl-PLPolish (Poland)Gatunki Mycobacterium tuberculosis complex:obecność lub identyfikacja:punkt w czasie:XXX:skala nominalna:sekwencjonowanie
Synonyms: Prątek gruźlicy wynik kategorialny
zh-CNChinese (China)结核分枝杆菌复合菌群种:存在与否或特征标识:时间点:XXX:名义型:序列测定
Synonyms: AFB 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分支杆菌 分支杆菌属 分枝杆菌属 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 劳瘵 复合体 存在;存在与否;特征标识;身份;身份标识 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 抗酸 抗酸杆菌 抗酸杆菌（Acid fast bacillus，AFB） 抗酸菌 时刻;随机;随意;瞬间 痨 痨病 结核 结核;肺结核;痨;痨病;TB 结核分支杆菌;结核杆菌;结核菌 结核分枝杆菌复合菌群（复合群、复合菌、复合体、复合物）;结核分支杆菌复合体;结核分支杆菌复合群;结核分支杆菌复合菌群;结核分枝杆菌复合体;结核分枝杆菌复合物;结核分枝杆菌结核菌群;结核杆菌复合菌群 结核分枝杆菌复合菌群（复合群、复合菌、复合体、复合物）种;结核分支杆菌复合体种;结核分支杆菌复合群种;结核分支杆菌复合菌群种;结核分枝杆菌复合体种;结核分枝杆菌复合物种;结核分枝杆菌结核菌群种;结核杆菌复合菌群种 结核病 肺结核

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=92827-5