96122-7SARS-related coronavirus E gene [Presence] in Upper respiratory specimen by NAA with probe detectionActive
Part Description
LP417600-6 SARS-related coronavirus E gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC:coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- SARS-related coronavirus E gene
- Property
- PrThr
- Time
- Pt
- System
- Respiratory.upper
- Scale
- Ord
- Method
- Probe.amp.tar
Additional Names
- Short Name
- SARS-rel CoV E gene Upper resp Ql NAA+prb
- Display Name
- SARS-related coronavirus E gene NAA+probe Ql (Upper resp)
- Consumer Name Alpha
- SARS-related coronavirus E gene, Upper respiratory
Example Answer List LL2021-5
Source: Gen-Probe
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) | LA6576-8 | ||
| Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) | LA6577-6 | ||
| Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) | LA15841-2 |
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.69
- Last Updated
- Version 2.69
- Order vs. Observation
- Both
Reference Information
| Type | Source | Reference |
|---|---|---|
| Webcontent | Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. | Coronavirus (COVID-19) Testing |
| Mapping Guidance | LOINC | Take caution when mapping LOINC codes to molecular tests for SARS coronaviruses that target nucleic acids within the E gene. Such assays detect either SARS-related coronavirus or SARS-CoV-2, depending on the targeted region within the E gene. Assays that are non-specific to only SARS-CoV-2 may say they are "positive" for SARS-CoV-2, but only because it is the primary circulating virus during the pandemic. These assays actually detect any SARS-related coronaviruses since they target a region in the E gene that contains sequence homology to other known coronaviruses. Other assays target a region in the E gene that is specific for SARS-CoV-2. The LIVD file contains current LOINC code mappings to many IVD tests [https://www.cdc.gov/csels/dls/sars-cov-2-livd-codes.html]. You may also contact the manufacturer directly to verify LOINC code mappings. |
Member of these Groups
| LG50982-4 | SARS-related coronavirus |
| LG51048-3 | SARS-related coronavirus E gene| |
Language Variants Get Info
- zh-CNChinese (China)
- SARS 冠状病毒 2 E 基因:
存在情况或阈值: 时间点: 呼吸道.上: 序数型: 探针法.基因扩增.靶向 - nl-NLDutch (Netherlands)
- SARS-gerelateerd coronavirus E-gen:
aanwezigheid: moment: bovenste luchtwegen: ordinaal: moleculaire techniek (PCR) - fr-FRFrench (France)
- Coronavirus SARS apparentés ARN gène E:
Présence/Seuil: Ponctuel: Voies respiratoires supérieures: Qualitatif: PCR amplification de cible - it-ITItalian (Italy)
- Coronavirus correlato a SARS, gene E:
PrThr: Pt: Sistema respiratorio.superiore: Ord: Sonda.amp.tar - es-MXSpanish (Mexico)
- Gen del coronavirus E relacionado con el SARS:
Presencia o umbral: Punto temporal: Muestra respiratoria superior: Ordinal: Amplificación de ácidos nucleicos con detección de sonda - es-ESSpanish (Spain)
- Gen del coronavirus E relacionado con el SARS:
PrThr: Punto temporal: Muestra respiratoria de vías altas: Ord: Sonda con amplificación dirigida
LOINC FHIR® API Example - CodeSystem Request Get Info
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96122-7
Third Party Copyright
This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.
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LOINC Copyright
Copyright © 2022 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright