Version 2.78

Term Description

Qualitative detection of nucleic acids within the N gene of SARS coronavirus 2 (SARS-CoV-2) in saliva specimens by nucleic acid amplification with probe-based detection using the N1 primer-probe set developed by the Centers for Disease Control and Prevention (CDC). [CDC: coronavirus/COVID-19/lab/]
Source: Regenstrief LOINC

Part Descriptions

LP417599-0   SARS coronavirus 2 N gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance] Source: Regenstrief LOINC

LP7565-7   Saliva
Saliva is produced primarily by the parotid, submaxillary, and sublingual glands. It is secreted at the rate of 0-3 milliliters per minute which is affected by various factors including anxiety, hydration and hunger. Oral fluid is broadly used to test for drugs of abuse in employment and forensic settings, and is especially useful since it is difficult to adulterate, is quick and is non-invasive. Oral fluid is used to test a variety of analytes, including to test alcohol, HIV and other antibodies, therapeutic drugs and steroids, but its primary use is to test for drugs of abuse including amphetamines, cocaine and metabolites, opioids, methadone, cannabis and heroin. PMID: 17268583 Source: Regenstrief LOINC

Reference Information

Type Source Reference
Webcontent Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. Coronavirus (COVID-19) Testing

Fully-Specified Name

Component
SARS coronavirus 2 N gene
Property
PrThr
Time
Pt
System
Saliva
Scale
Ord
Method
Probe.amp.tar.CDC primer-probe set N1

Additional Names

Short Name
SARS-CoV-2 N gene Sal Ql NAA N1
Display Name
SARS-CoV-2 (COVID-19) N gene NAA+probe CDC primer-probe set N1 Ql (Sal)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) N gene, Saliva

Example Answer List: LL2021-5

Source: Gen-Probe
Answer Code Score Answer ID
PositiveCopyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
NegativeCopyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
InvalidCopyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) LA15841-2

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.69
Last Updated
Version 2.69
Order vs. Observation
Both

Member of these Panels

LOINC Long Common Name
95826-4 SARS-CoV-2 (COVID-19) RNA panel - Saliva (oral fluid) by NAA with probe detection

Member of these Groups Get Info

LOINC Group Group Name
LG51017-8 SARSCoV2 detection
LG51019-4 SARSCoV2 molecular detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) SARS-Coronavirus 2 N-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Speichel:Ordinal:Zielfragmentamplifikation mit Sondendetektion mit Primer-Sondenset N1 des Center for Disease Control and Prevention
es-ES Spanish (Spain) Gen N de SARS-CoV-2 (COVID-19):PrThr:Punto temporal:Saliva:Ord:Amplificación de ácido nucleico utilizando el conjunto de cebadores y sondas N1 de los Centros para el Control y la Prevención de Enfermedades
es-MX Spanish (Mexico) Gen del coronavirus 2 N del SARS:Presencia o umbral:Punto temporal:Saliva:Ordinal:Amplificación de ácido nucleico utilizando el conjunto de cebadores y sondas de los Centros para el Control y la Prevención de Enfermedades N1
fr-FR French (France) Coronavirus SARS-CoV-2 gène N:Présence/Seuil:Ponctuel:Salive:Qualitatif:PCR amplification de cible N1
it-IT Italian (Italy) SARS coronavirus 2, gene N:PrThr:Pt:Saliva:Ord:Sonda.amp.tar.CDC set primer-sonda N1
Synonyms: Amplificazione degli acidi nucleici utilizzando il set primer-sonda N1 dei Centri per il controllo e la prevenzione della malattia Coronavirus della SARS Gene N di SARS-CoV-2 (COVID-19) Microbiologia Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL Dutch (Netherlands) SARS-CoV-2 N-gen:aanwezigheid:moment:speeksel:ordinaal:probe-detectie met CDC primer-probe set N1
Synonyms: evere acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19 moleculaire techniek (PCR) met CDC-primer-probe set N1 probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
zh-CN Chinese (China) SARS 冠状病毒 2 N 基因:存在情况或阈值:时间点:唾液:序数型:探针法.基因扩增.靶向.CDC 引物-探针组 N1
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II N 型 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 依次型;分类顺序型;定性的;序数型(或称等级型);性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 借助扩增的探针方法;借助扩增的探针法;探针法.扩增 借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况(存在、存在与否、是否存在)或阈值(界值、界限、阀值、临界值) 微生物学;微生物学试验;微生物学试验(培养、DNA、抗原及抗体) 扩增型 扩增性 探针法.扩增.靶向.CDC(美国疾病控制与预防中心)引物-探针组(探针集合、探针集、探针组合) N1 时刻;随机;随意;瞬间 津;津液;涎 疾病预防控制中心;疾控中心;Centers for Disease Control and Prevention;美国疾病控制与预防中心;美国疾病控制和预防中心;美国疾病预防控制中心 经过扩增的 脱氧核糖核酸探针 遗传基因;遗传因子;吉恩;生物基因

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CodeSystem lookup
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