LOINC
Version 2.72

96448-6SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N1Active

Term Description

Qualitative detection of nucleic acids within the N gene of SARS coronavirus 2 (SARS-CoV-2) in saliva specimens by nucleic acid amplification with probe-based detection using the N1 primer-probe set developed by the Centers for Disease Control and Prevention (CDC). [CDC:coronavirus/COVID-19/lab/]
Source: Regenstrief LOINC

Part Descriptions

LP417599-0   SARS coronavirus 2 N gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC:coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance] Source: Regenstrief LOINC

LP7565-7   Saliva
Saliva is produced primarily by the parotid, submaxillary, and sublingual glands. It is secreted at the rate of 0-3 milliliters per minute which is affected by various factors including anxiety, hydration and hunger. Oral fluid is broadly used to test for drugs of abuse in employment and forensic settings, and is especially useful since it is difficult to adulterate, is quick and is non-invasive. Oral fluid is used to test a variety of analytes, including to test alcohol, HIV and other antibodies, therapeutic drugs and steroids, but its primary use is to test for drugs of abuse including amphetamines, cocaine and metabolites, opioids, methadone, cannabis and heroin.[PMID:17268583] Source: Regenstrief LOINC

Fully-Specified Name

Component
SARS coronavirus 2 N gene
Property
PrThr
Time
Pt
System
Saliva
Scale
Ord
Method
Probe.amp.tar.CDC primer-probe set N1

Additional Names

Short Name
SARS-CoV-2 N gene Sal Ql NAA N1
Display Name
SARS-CoV-2 (COVID-19) N gene NAA+probe CDC primer-probe set N1 Ql (Sal)
Consumer Name Alpha
SARS-CoV-2 (COVID-19) N gene, Saliva

Example Answer List LL2021-5

Source: Gen-Probe

Answer Code Score Answer ID
Positive Copyright http://snomed.info/sct ID:10828004 Positive (qualifier value) LA6576-8
Negative Copyright http://snomed.info/sct ID:260385009 Negative (qualifier value) LA6577-6
Invalid Copyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value) LA15841-2

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.69
Last Updated
Version 2.69
Order vs. Observation
Both

Reference Information

Type Source Reference
Webcontent Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. Coronavirus (COVID-19) Testing

Member of these Panels

LOINC Long Common Name
95826-4 SARS-CoV-2 (COVID-19) RNA panel - Saliva (oral fluid) by NAA with probe detection

Member of these Groups

LG51017-8 SARSCoV2 detection
LG51019-4 SARSCoV2 molecular detection

Language Variants Get Info

zh-CNChinese (China)
SARS 冠状病毒 2 N 基因:存在情况或阈值:时间点:唾液:序数型:探针法.基因扩增.靶向.CDC 引物-探针组 N1
nl-NLDutch (Netherlands)
SARS-CoV-2 N-gen:aanwezigheid:moment:speeksel:ordinaal:PCR met CDC primer-probe set N1
fr-FRFrench (France)
Coronavirus SARS-CoV-2 gène N:Présence/Seuil:Ponctuel:Salive:Qualitatif:PCR amplification de cible N1
de-DEGerman (Germany)
SARS-Coronavirus 2 N-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Speichel (Mundflüssigkeit):Ordinal:Zielfragmentamplifikation mit Sondendetektion mit CDC Primer-Sondenset N1
it-ITItalian (Italy)
SARS coronavirus 2, gene N:PrThr:Pt:Saliva:Ord:Sonda.amp.tar.CDC set primer-sonda N1
es-MXSpanish (Mexico)
Gen del coronavirus 2 N del SARS:Presencia o umbral:Punto temporal:Saliva:Ordinal:Amplificación de ácido nucleico utilizando el conjunto de cebadores y sondas de los Centros para el Control y la Prevención de Enfermedades N1
es-ESSpanish (Spain)
Gen N de SARS-CoV-2 (COVID-19):PrThr:Punto temporal:Saliva:Ord:Amplificación de ácido nucleico utilizando el conjunto de cebadores y sondas N1 de los Centros para el Control y la Prevención de Enfermedades

LOINC FHIR® API Example - CodeSystem Request Get Info

https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96448-6