96894-1

SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Active

Term Description

This panel contains sequencing and identification results for SARS coronavirus 2 (SARS-CoV-2) detected in various specimens. Results may include the genome sequence, identified S gene mutations of known and unknown significance, and the clade [LOINC: 96896-6], lineage [LOINC: 96895-8] and other (e.g. common) variant name [LOINC: 96741-4], such as "UK variant", based on the viral genome sequence and mutations found. Currently, lineage results may be determined using the Pangolin lineage assignment application (https://cov-lineages.org/pangolin.html), and clade assignment based on either the Nextstrain application (https://clades.nextstrain.org) or GISAID (https://www.gisaid.org/).
Source: Regenstrief LOINC

Panel Hierarchy

Details for each LOINC in Panel LHC-Forms

LOINC	Name	R/O/C	Cardinality	Example UCUM Units
96894-1	SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method
Indent98062-3	Sequencing study identifier
Indent96766-1	GISAID sequence accession number
Indent94764-8	SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing
Indent96751-3	SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method
Indent96752-1	SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method
Indent96896-6	SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method
Indent96895-8	SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method
Indent96741-4	SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing
Indent96755-4	SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative

Fully-Specified Name

Component: SARS coronavirus 2 sequencing & identification panel
Property: -
Time: Pt
System: XXX
Scale: -
Method: Molgen

Additional Names

Short Name: SARS-CoV-2 Seq and ID Pnl Spec
Display Name: SARS-CoV-2 (COVID-19) sequencing and identification panel Molgen (Specimen)
Consumer Name Alpha Get Info: SARS-CoV-2 (COVID-19) sequencing and identification panel, Specimen

Basic Attributes

Class: PANEL.MICRO
Type: Laboratory
First Released: Version 2.70
Last Updated: Version 2.70
Order vs. Observation: Order
Panel Type: Panel

Member of these Groups Get Info

LOINC Group	Group Name
LG51017-8	SARSCoV2 detection

Language Variants Get Info

Tag	Language	Translation
de-DE	German (Germany)	SARS-Coronavirus 2 Sequenzierung und Identifikation (Liste):-:Zeitpunkt:XXX:-:Molekulargenetisch
es-ES	Spanish (Spain)	Panel de identificación y secuenciación del SARS-CoV-2 (COVID-19):Propiedades mixtas (sólo paneles):Punto temporal:XXX:-:Genética molecular
es-MX	Spanish (Mexico)	Panel de identificación y secuenciación del coronavirus 2 del SARS:-:Punto temporal:No especificado:-:Molgen
fr-FR	French (France)	Coronavirus SARS-CoV-2 séquençage et identification panel:-:Ponctuel:Milieux divers:-:Biologie moléculaire
it-IT	Italian (Italy)	SARS coronavirus 2, identificazione & sequenziamento:-:Pt:XXX:-:Molgen Synonyms: Coronavirus della SARS Genetica molecolare Identificazione & sequenziamento di SARS coronavirus 2;identificazione & sequenziamento di SARS-CoV-2 (COVID-19) Microbiologia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Set di prescrizione microbiologia
nl-NL	Dutch (Netherlands)	SARS-CoV-2 sequencing en identificatie panel:-:moment:XXX:-:moleculair genetisch onderzoek Synonyms: molgen SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
pl-PL	Polish (Poland)	Panel identyfikacji i sekwencjonowania całego genomu SARS-CoV-2:-:punkt w czasie:XXX:-:genetyka molekularna Synonyms: Koronawirus
zh-CN	Chinese (China)	SARS 冠状病毒 2 序列测定与鉴定组套:-:时间点:XXX:-:分子遗传学类实验室方法 Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 序列测定（测序、序列分析）与鉴定组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目）;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia; SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项分子遗传学;分子遗传学方法;分子遗传学类方法;分子遗传学类检验方法;包括 RFL、PCR 及其他方法在内，用于在分子基础上检测遗传属性的方法的大类;聚合酶链反应;聚合酶链式反应医嘱套餐医嘱套餐类医嘱套餐组医嘱组医嘱组.微生物学;实验室组套（组合、医嘱组、套餐、套餐医嘱、医嘱套餐、组合申请、组合项目）类.微生物学试验;医嘱组.微生物学试验;医嘱组类.微生物学;医嘱组类.微生物学试验;实验室医嘱组类.微生物学;微生物学医嘱组;微生物学医嘱组类医嘱组合医嘱组合类医嘱组套医嘱组套类医嘱组类多重;多重型;多重标尺类型;多重精度类型套餐套餐医嘱套餐医嘱组套餐医嘱组类实验室医嘱套餐实验室医嘱套餐类实验室医嘱组实验室医嘱组合类实验室医嘱组套实验室医嘱组套类实验室套餐医嘱组实验室套餐医嘱组类实验室检验项目医嘱组合类实验室检验项目组合类微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）时刻;随机;随意;瞬间检验医嘱组合类检验项目医嘱组合类检验项目组合类组组合组合医嘱组合类组套鉴定;识别;验明;身份证明;确认;认出;核实;认同;身份证件

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LOINC Copyright

Copyright © 2024 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © 1995-2024, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.