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Term Description

SARS coronavirus 2 (SARS-CoV-2) lineage determine by molecular genetic methods, such as sequencing or PCR. Results may be determined using the Pangolin lineage assignment application https://cov-lineages.org/pangolin.html or another lineage classification.

Part Description

LP422739-5   SARS coronavirus 2 lineage
Lineage nomenclatures are intended to provide a detailed level differentiation of viral mutations of SARS-CoV-2 over time. However, proposed lineage nomenclatures are not intended to portray every evolutionary change, but rather those associated with important epidemiological and biological events. PMID: 32669681 That being said they are not as broad-brushed as clades, but are expected to correspond to outbreaks. PMID: 32794443 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
SARS coronavirus 2 lineage:Prid:Pt:XXX:Nom:Molgen
Long Common Name
SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method
Short Name
SARS-CoV-2 lineage Spec
Display Name
SARS-CoV-2 (COVID-19) lineage Molgen Nom (Specimen)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) lineage, Specimen

Part Model Get Info

  • Component
    SARS coronavirus 2 lineage
    LP422739-5
    • Analyte
      SARS coronavirus 2 lineage
      LP422739-5
      • Component Numerator
        SARS coronavirus 2 lineage
        LP422739-5
        • Component Numerator Core
          SARS coronavirus 2 lineage
          LP422739-5
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Prid
    LP6850-4
  • Time
    Pt
    LP6960-1
  • System
    XXX
    LP7735-6
    • System Core
      XXX
      LP7735-6
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Molgen
    LP6404-0

Example Answer List: LL5807-4

Source: LOINC
AnswerCodeScoreAnswer ID
SARS-CoV-2 A.1.1 lineageLA31701-8
SARS-CoV-2 B.1.1.238 lineage

Also known as Nigerian variant

LA31620-0
SARS-CoV-2 B.1.2 lineageLA31703-4
SARS-CoV-2 B.1.1 lineageLA31704-2
SARS-CoV-2 B.1.1.7 lineage

Also known as WHO Alpha variant, and UK variant

LA31705-9
SARS-CoV-2 B.1.29 lineageLA31706-7
SARS-CoV-2 B.2.4 lineageLA31702-6
SARS-CoV-2 B.1.351 lineage

Also known as WHO Beta variant, GH/501Y.V2, and South Africa variant

LA32553-2
SARS-CoV-2 P.1 lineage

Also known as WHO gamma lineage, and Brazil variant

LA32555-7
SARS-CoV-2 B.1.617.2 lineage

Also known as WHO Delta variant

LA32556-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.72 (MIN)
Change Reason
Release 2.72: DefinitionDescription: Updated description to clarify that this term is not specific to Pangolin lineage only.;
Order vs. Observation
Observation

Member of these Panels

LOINCLong Common Name
96894-1SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Member of these Groups Get Info

LOINC GroupGroup Name
LG51017-8SARSCoV2 detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)SARS-CoV-2 (COVID-19) linie:Přítomnost nebo identita:Časový bod:XXX:Nominální:Molekulární genetika
de-DEGerman (Germany)SARS-Coronavirus 2 Abstammungslinie:Nachweis oder Identität:Zeitpunkt:XXX:Nominal:Molekulargenetisch
el-GRGreek (Greece)Γενεαλογική σειρά κορωνοϊού SARS 2:Prid:Pt:XXX:Nom:Μοριακή γενετική
Synonyms: MICRO Nom Prid Pt XXX Γενεαλογική σειρά κορωνοϊού SARS 2 Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2 Μοριακή γενετική
es-ESSpanish (Spain)Linaje de SARS-CoV-2 (COVID-19):Presencia o identidad:Punto temporal:XXX:Nom:Genética molecular
es-MXSpanish (Mexico)Linaje del coronavirus 2 del SARS:Orgullo:Punto temporal:No especificado:Nominal:Molgen
fr-FRFrench (France)Coronavirus SARS-CoV-2 lignée:Identification:Ponctuel:Milieux divers:Résultat nominal:Biologie moléculaire
it-ITItalian (Italy)SARS coronavirus 2, lignaggio:Prid:Pt:XXX:Nom:Molgen
Synonyms: Coronavirus della SARS Genetica molecolare Lignaggio di SARS-CoV-2 (COVID-19) Microbiologia Presenza o Identità Punto nel tempo (episodio) SARS-CoV-2 (COVID-19)
nl-NLDutch (Netherlands)SARS-CoV-2 lineage:identificator:moment:XXX:nominaal:moleculair genetisch onderzoek
Synonyms: molgen SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
pl-PLPolish (Poland)SARS koronawirus linia genetyczna:obecność lub identyfikacja:punkt w czasie:XXX:skala nominalna:genetyka molekularna
Synonyms: diagnostyka molekularna Koronawirus Linia genetyczna SARS-CoV-2 wynik kategorialny
zh-CNChinese (China)SARS 冠状病毒 2 谱系:存在与否或特征标识:时间点:XXX:名义型:分子遗传学类实验室方法
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 谱系（世系、血统、宗系、家系、种系）;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分子遗传学;分子遗传学方法;分子遗传学类方法;分子遗传学类检验方法;包括 RFL、PCR 及其他方法在内，用于在分子基础上检测遗传属性的方法的大类;聚合酶链反应;聚合酶链式反应 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96895-8