Version 2.77

Term Description

SARS coronavirus 2 (SARS-CoV-2) lineage determine by molecular genetic methods, such as sequencing or PCR. Results may be determined using the Pangolin lineage assignment application [https://cov-lineages.org/pangolin.html] or another lineage classification.
Source: Regenstrief LOINC

Part Description

LP422739-5   SARS coronavirus 2 lineage
Lineage nomenclatures are intended to provide a detailed level differentiation of viral mutations of SARS-CoV-2 over time. However, proposed lineage nomenclatures are not intended to portray every evolutionary change, but rather those associated with important epidemiological and biological events. PMID: 32669681 That being said they are not as broad-brushed as clades, but are expected to correspond to outbreaks. PMID: 32794443 Source: Regenstrief LOINC

Reference Information

Type Source Reference
Webcontent Lab Tests Online®Copyright Copyright © 2021 Lab Tests Online. All rights reserved. Coronavirus (COVID-19) Testing

Fully-Specified Name

Component
SARS coronavirus 2 lineage
Property
Prid
Time
Pt
System
XXX
Scale
Nom
Method
Molgen

Additional Names

Short Name
SARS-CoV-2 lineage Spec
Display Name
SARS-CoV-2 (COVID-19) lineage Molgen Nom (Specimen)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) lineage, Specimen

Example Answer List: LL5807-4

Source: LOINC
Answer Code Score Answer ID
SARS-CoV-2 A.1.1 lineage LA31701-8
SARS-CoV-2 B.1.1.238 lineage

Also known as Nigerian variant

 LA31620-0
SARS-CoV-2 B.1.2 lineage LA31703-4
SARS-CoV-2 B.1.1 lineage LA31704-2
SARS-CoV-2 B.1.1.7 lineage

Also known as WHO Alpha variant, and UK variant

 LA31705-9
SARS-CoV-2 B.1.29 lineage LA31706-7
SARS-CoV-2 B.2.4 lineage LA31702-6
SARS-CoV-2 B.1.351 lineage

Also known as WHO Beta variant, GH/501Y.V2, and South Africa variant

 LA32553-2
SARS-CoV-2 P.1 lineage

Also known as WHO gamma lineage, and Brazil variant

 LA32555-7
SARS-CoV-2 B.1.617.2 lineage

Also known as WHO Delta variant

 LA32556-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.72
Change Reason
Release 2.72: DefinitionDescription: Updated description to clarify that this term is not specific to Pangolin lineage only.;
Order vs. Observation
Observation

Member of these Panels

LOINC Long Common Name
96894-1 SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Member of these Groups Get Info

LOINC Group Group Name
LG51017-8 SARSCoV2 detection

Language Variants Get Info

Tag Language Translation
de-DE German (Germany) SARS-Coronavirus 2 Abstammungslinie:Nachweis oder Identität:Zeitpunkt:XXX:Nominal:Molekulargenetisch
es-ES Spanish (Spain) Linaje de SARS-CoV-2 (COVID-19):Presencia o identidad:Punto temporal:XXX:Nom:Genética molecular
es-MX Spanish (Mexico) Linaje del coronavirus 2 del SARS:Orgullo:Punto temporal:No especificado:Nominal:Molgen
fr-FR French (France) Coronavirus SARS-CoV-2 lignée:Identification:Ponctuel:Milieux divers:Résultat nominal:Biologie moléculaire
it-IT Italian (Italy) SARS coronavirus 2, lignaggio:Prid:Pt:XXX:Nom:Molgen
Synonyms: Coronavirus della SARS Genetica molecolare Lignaggio di SARS-CoV-2 (COVID-19) Microbiologia Presenza o Identità Punto nel tempo (episodio) SARS-CoV-2 (COVID-19)
nl-NL Dutch (Netherlands) SARS-CoV-2 lineage:identificator:moment:XXX:nominaal:moleculair genetisch onderzoek
Synonyms: molgen SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
pl-PL Polish (Poland) Linia rodowodowa SARS-CoV-2:wykrycie lub identyfikacja:punkt w czasie:XXX:cecha:genetyka molekularna
Synonyms: Koronawirus
zh-CN Chinese (China) SARS 冠状病毒 2 谱系:存在与否或特征标识:时间点:XXX:名义型:分子遗传学类实验室方法
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 谱系（世系、血统、宗系、家系、种系）;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分子遗传学;分子遗传学方法;分子遗传学类方法;分子遗传学类检验方法;包括 RFL、PCR 及其他方法在内，用于在分子基础上检测遗传属性的方法的大类;聚合酶链反应;聚合酶链式反应 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96895-8