96896-6

SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method

Active

Term Description

SARS coronavirus 2 (SARS-CoV-2) clade assignment may be based on either the Nextstrain application [https://clades.nextstrain.org] or GISAID [https://www.gisaid.org/].
Source: Regenstrief LOINC

Part Description

LP422736-1 SARS coronavirus 2 clade
Clade nomenclatures aim at providing a broad-brush categorization of globally circulating diversity of SARS-CoV-2.[PMID:32794443] One example of a Clade nomenclature is the based on year followed by a letter (Nextstrain.org). These are meant to be major groupings and not intended to completely specify genetic diversity. In general, new clades are proposed when certain criteria are met, for example reaching a frequency of 20% globally with at least two mutations away from its parent clade.[https://virological.org/t/year-letter-genetic-clade-naming-for-sars-cov-2-on-nextstrain-org/498] Source: Regenstrief LOINC

Reference Information

Type	Source	Reference
Webcontent	Lab Tests Online^®Copyright Copyright © 2021 Lab Tests Online. All rights reserved.	Coronavirus (COVID-19) Testing

Fully-Specified Name

Component: SARS coronavirus 2 clade
Property: Type
Time: Pt
System: XXX
Scale: Nom
Method: Molgen

Additional Names

Short Name: SARS-CoV-2 clade Spec
Display Name: SARS-CoV-2 (COVID-19) clade Molgen Nom (Specimen)
Consumer Name Alpha: SARS-CoV-2 (COVID-19) clade, Specimen

Example Answer List: LL5806-6

Source: LOINC

Answer	Code	Score	Answer ID
SARS-CoV-2 clade 19A			LA31687-9
SARS-CoV-2 clade 19B			LA31688-7
SARS-CoV-2 clade 20A			LA31689-5
SARS-CoV-2 clade 20B			LA31690-3
SARS-CoV-2 clade 20C			LA31691-1
SARS-CoV-2 clade 20D			LA31692-9
SARS-CoV-2 clade 20E			LA31693-7
SARS-CoV-2 clade 20F			LA31694-5
SARS-CoV-2 clade 20G			LA31695-2
SARS-CoV-2 clade 20H			LA31696-0
SARS-CoV-2 clade 20I			LA31697-8
SARS-CoV-2 clade 20J			LA31698-6

Basic Attributes

Class: MICRO
Type: Laboratory
First Released: Version 2.70
Last Updated: Version 2.72
Order vs. Observation: Observation

Member of these Panels

LOINC	Long Common Name
96894-1	SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Member of these Groups

LOINC Group	Group Name
LG51017-8	SARSCoV2 detection

Language Variants

Tag	Language	Translation
it-IT	Italian (Italy)	SARS coronavirus 2 clade:Tipo:Pt:XXX:Nom:Molgen Synonyms: Coronavirus della SARS Genetica molecolare Microbiologia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) SARS-CoV-2 (COVID-19) clade
nl-NL	Dutch (Netherlands)	SARS-CoV-2 clade:type:moment:XXX:nominaal:moleculair genetisch onderzoek Synonyms: molgen SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
de-DE	German (Germany)	SARS-Coronavirus 2-Klade:Typ:Zeitpunkt:XXX:Nominal:Molekulargenetisch
es-ES	Spanish (Spain)	Clado de SARS-CoV-2 (COVID-19):Tipo:Punto temporal:XXX:Nom:Genética molecular
pl-PL	Polish (Poland)	klad SARS-CoV-2:Typ:Punkt w czasie:XXX:Nominalny:Genetyka molekularna Synonyms: klad koronawirusa 2 ciężkiej ostrej niewydolności oddechowej koronawirus 2 ciężkiej ostrej niewydolności oddechowej
zh-CN	Chinese (China)	SARS 冠状病毒 2 分支:类型:时间点:XXX:名义型:分子遗传学类实验室方法 Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 分支（进化枝、支系、分枝、分化体、种系分枝、演化支）;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项分子遗传学;分子遗传学方法;分子遗传学类方法;分子遗传学类检验方法;包括 RFL、PCR 及其他方法在内，用于在分子基础上检测遗传属性的方法的大类;聚合酶链反应;聚合酶链式反应分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答型微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）时刻;随机;随意;瞬间
es-MX	Spanish (Mexico)	SARS coronavirus 2 clado:Escribe:Punto temporal:No especificado:Nominal:Molgen

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LOINC Copyright

Copyright © 2023 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © 1995-2023, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.