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Term Description

SARS coronavirus 2 (SARS-CoV-2) clade assignment may be based on either the Nextstrain application [https://clades.nextstrain.org] or GISAID https://www.gisaid.org/.

Part Description

LP422736-1   SARS coronavirus 2 clade
Clade nomenclatures aim at providing a broad-brush categorization of globally circulating diversity of SARS-CoV-2. PMID: 32794443 One example of a Clade nomenclature is the based on year followed by a letter (Nextstrain.org). These are meant to be major groupings and not intended to completely specify genetic diversity. In general, new clades are proposed when certain criteria are met, for example reaching a frequency of 20% globally with at least two mutations away from its parent clade.https://virological.org/t/year-letter-genetic-clade-naming-for-sars-cov-2-on-nextstrain-org/498 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
SARS coronavirus 2 clade:Type:Pt:XXX:Nom:Molgen
Long Common Name
SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method
Short Name
SARS-CoV-2 clade Spec
Display Name
SARS-CoV-2 (COVID-19) clade Molgen Nom (Specimen)
Consumer Name Alpha Get Info
SARS-CoV-2 (COVID-19) clade, Specimen

Part Model Get Info

  • Component
    SARS coronavirus 2 clade
    LP422736-1
    • Analyte
      SARS coronavirus 2 clade
      LP422736-1
      • Component Numerator
        SARS coronavirus 2 clade
        LP422736-1
        • Component Numerator Core
          SARS coronavirus 2 clade
          LP422736-1
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Type
    LP6886-8
  • Time
    Pt
    LP6960-1
  • System
    XXX
    LP7735-6
    • System Core
      XXX
      LP7735-6
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Molgen
    LP6404-0

Example Answer List: LL5806-6

Source: LOINC
AnswerCodeScoreAnswer ID
SARS-CoV-2 clade 19ALA31687-9
SARS-CoV-2 clade 19BLA31688-7
SARS-CoV-2 clade 20ALA31689-5
SARS-CoV-2 clade 20BLA31690-3
SARS-CoV-2 clade 20CLA31691-1
SARS-CoV-2 clade 20DLA31692-9
SARS-CoV-2 clade 20ELA31693-7
SARS-CoV-2 clade 20FLA31694-5
SARS-CoV-2 clade 20GLA31695-2
SARS-CoV-2 clade 20HLA31696-0
SARS-CoV-2 clade 20ILA31697-8
SARS-CoV-2 clade 20JLA31698-6

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.70
Last Updated
Version 2.72 (MIN)
Order vs. Observation
Observation

Member of these Panels

LOINCLong Common Name
96894-1SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method

Member of these Groups Get Info

LOINC GroupGroup Name
LG51017-8SARSCoV2 detection

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)SARS-CoV-2 (COVID-19) klad:Typ:Časový bod:XXX:Nominální:Molekulární genetika
de-DEGerman (Germany)SARS-Coronavirus 2 Klade:Typ:Zeitpunkt:XXX:Nominal:Molekulargenetisch
el-GRGreek (Greece)Κλάδος κορωνοϊού SARS 2:Type:Pt:XXX:Nom:Μοριακή γενετική
Synonyms: MICRO Nom Pt Type XXX Κλάδος κορωνοϊού SARS 2 Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2 Μοριακή γενετική
es-ESSpanish (Spain)Clado de SARS-CoV-2 (COVID-19):Tipo:Punto temporal:XXX:Nom:Genética molecular
es-MXSpanish (Mexico)SARS coronavirus 2 clado:Escribe:Punto temporal:No especificado:Nominal:Molgen
fr-FRFrench (France)Coronavirus SARS-CoV-2 clade:Type:Ponctuel:Milieux divers:Résultat nominal:Biologie moléculaire
it-ITItalian (Italy)SARS coronavirus 2 clade:Tipo:Pt:XXX:Nom:Molgen
Synonyms: Coronavirus della SARS Genetica molecolare Microbiologia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) SARS-CoV-2 (COVID-19) clade
nl-NLDutch (Netherlands)SARS-CoV-2 clade:type:moment:XXX:nominaal:moleculair genetisch onderzoek
Synonyms: molgen SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19
pl-PLPolish (Poland)Klad SARS-CoV-2:typ:punkt w czasie:XXX:skala nominalna:genetyka molekularna
Synonyms: diagnostyka molekularna Koronawirus wynik kategorialny
zh-CNChinese (China)SARS 冠状病毒 2 进化枝:类型:时间点:XXX:名义型:分子遗传学类实验室方法
Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II SARS 冠状病毒 2 进化枝（分支、支、支系、分枝、分化体、种系分枝、演化支）;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分子遗传学;分子遗传学方法;分子遗传学类方法;分子遗传学类检验方法;包括 RFL、PCR 及其他方法在内，用于在分子基础上检测遗传属性的方法的大类;聚合酶链反应;聚合酶链式反应 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 型 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=96896-6