96957-6

SARS-CoV-2 (COVID-19) M gene [Presence] in Upper respiratory specimen by NAA with probe detection

Active

Term Description

Qualitative detection of nucleic acids within the membrane (M) gene of SARS coronavirus 2 (SARS-CoV-2) in upper respiratory specimens by nucleic acid amplification with probe-based detection.

Part Description

LP422882-3 SARS coronavirus 2 M gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov]https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name: SARS coronavirus 2 M gene:PrThr:Pt:Respiratory system specimen.upper:Ord:Probe.amp.tar
Long Common Name: SARS-CoV-2 (COVID-19) M gene [Presence] in Upper respiratory specimen by NAA with probe detection
Short Name: SARS-CoV-2 M gene Upper resp Ql NAA+prb
Display Name: SARS-CoV-2 (COVID-19) M gene NAA+probe Ql (Upper resp)
Consumer Name Alpha Get Info: SARS-CoV-2 (COVID-19) M gene, Upper respiratory

Part Model Get Info

Component
SARS coronavirus 2 M gene
LP422882-3
- Analyte
  SARS coronavirus 2 M gene
  LP422882-3
  - Component Numerator
    SARS coronavirus 2 M gene
    LP422882-3
    - Component Numerator Core
      SARS coronavirus 2 M gene
      LP422882-3
    - Component Numerator Core Suffix
      NULL
  - Component Denominator
    NULL
    - Component Denominator Core
      NULL
    - Component Denominator Core Suffix
      NULL
- Challenge
  NULL
- Adjustment
  NULL
- Count
  NULL
Property
PrThr
LP217195-9
Time
Pt
LP6960-1
- Time Core
  Pt
  LP6960-1
- Time Modifier
  NULL
System
Respiratory system specimen.upper
LP438103-6
- System Core
  Respiratory system specimen.upper
  LP438103-6
- Super System
  NULL
Scale
Ord
LP7751-3
Method
Probe.amp.tar
LP6464-4

Example Answer List: LL2021-5

Source: Gen-Probe

Answer	Code	Score	Answer ID
PositiveCopyright http://snomed.info/sct ID:10828004 Positive (qualifier value)			LA6576-8
NegativeCopyright http://snomed.info/sct ID:260385009 Negative (qualifier value)			LA6577-6
InvalidCopyright http://snomed.info/sct ID:455371000124106 Invalid result (qualifier value)			LA15841-2

Basic Attributes

Class: MICRO
Type: Laboratory
First Released: Version 2.70
Last Updated: Version 2.77 (MAJ)
Change Reason: Release 2.77: SYSTEM: Updated to standardize the representation of "Respiratory system specimen" in the System subhierarchy across LOINC;
Order vs. Observation: Both

Member of these Groups Get Info

LOINC Group	Group Name
LG51017-8	SARSCoV2 detection
LG51019-4	SARSCoV2 molecular detection

Language Variants Get Info

Tag	Language	Translation
cs-CZ	Czech (Czechia)	SARS-CoV-2 (COVID-19) gen M:Přítomnost nebo práh:Časový bod:Vzorek z horních cest dýchacích:Ordinální:Amplifikace nukleových kyselin s detekcí sondou
de-DE	German (Germany)	SARS-Coronavirus 2 M-Gen:Nachweis oder Schwellenwert:Zeitpunkt:Respirationstrakt.oberer:Ordinal:Zielfragmentamplifikation mit Sondendetektion
el-GR	Greek (Greece)	Γονίδιο M κορωνοϊού SARS 2:PrThr:Pt:Δείγμα αναπνευστικού συστήματος.ανώτερο:Ord:Ανιχνευτής.ενίσχυση.στόχου Synonyms: M MICRO Ord PrThr Pt Αναπνευστικό Αναπνευστικό σύστημα Ανιχνευτής Ανιχνευτής.ενίσχυση Ανιχνευτής.ενίσχυση.στόχου Γονίδιο Γονίδιο M κορωνοϊού SARS 2 Δείγμα Δείγμα αναπνευστικού συστήματος Δείγμα αναπνευστικού συστήματος.ανώτερο Κορωνοϊός Κορωνοϊός SARS Κορωνοϊός SARS 2
es-ES	Spanish (Spain)	Gen M del SARS-CoV-2 (COVID-19):PrThr:Punto temporal:Muestra de vías respiratorias altas:Ord:Sonda con amplificación dirigida Synonyms: Muestra del tracto respiratorio Muestra respiratoria Tracto respiratorio
es-MX	Spanish (Mexico)	Gen del coronavirus 2 M del SARS:PrThr:Punto temporal:Respiratorio superior:Ordinal:Probe.amp.tar
fr-FR	French (France)	Coronavirus SARS-CoV-2 gène M:Présence/Seuil:Ponctuel:Échantillon du système respiratoire supérieur:Qualitatif:PCR amplification de cible
it-IT	Italian (Italy)	SARS coronavirus 2, gene M:PrThr:Pt:Campione da Sistema Respiratorio.superiore:Ord:Sonda.amp.tar Synonyms: Campione da Apparato Respiratorio Campione da apparato respiratorio superiore Coronavirus della SARS Gene M di SARS coronavirus 2 gene M di SARS-CoV-2 (COVID-19) Microbiologia Presenza o Soglia Punto nel tempo (episodio) SARS-CoV-2 (COVID-19) Sonda con amplificazione Sonda con amplificazione del target Sonda di DNA
nl-NL	Dutch (Netherlands)	SARS-CoV-2 M-gen:aanwezigheid:moment:bovenste luchtwegen:ordinaal:probe-detectie Synonyms: bovenste ademhalingsstelsel; systema respiratorium superior probe.amp.tar SARS-virus severe acute respiratory syndrome coronavirus 2; 2019-nCoV; 2019 novel coronavirus; COVID-19 systema respiratorium; ademhalingsstelsel
pl-PL	Polish (Poland)	SARS koronowirus 2 M gen:granica wykrywalności:punkt w czasie:próbka z układu oddechowego.górna część:uporządkowany:sonda.amplifikacja.cel Synonyms: amplifikacja kwasu nukleinowego z detekcją za pomocą sondy amplifikacja z detekcją za pomocą sondy Gen 2 M SARS-CoV-2 Koronawirus próbka z górnych dróg układu oddechowego
zh-CN	Chinese (China)	SARS 冠状病毒 2 M 基因:存在情况或阈值:时间点:呼吸系统标本.上:序数型:探针法.基因扩增.靶向 Synonyms: 2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 Ⅱ II M 型 SARS 冠状病毒 2 M 基因;2019 新型冠状病毒;2019 年新型冠状病毒;2019-nCoV;SARS-CoV-2;新型冠状病毒肺炎;新冠肺炎;Coronavirus disease 2019;COVID-19;冠状病毒疾病2019;严重急性呼吸综合征;severe acute respiratory syndrome;SARS;传染性非典型肺炎;infectious atypical pneumonia;非典 SARS;SARS 病毒;SARS-CoV;严重急性呼吸综合征;严重急性呼吸综合征病毒;萨斯病毒;非典;非典型肺炎;非典型肺炎病毒;非典病毒 Up 上的上边上边的上部上部的上部的（Upper，Up）上面上面的供检查用的材料;待检物;待试验物;样品;样本;试料;试样依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型借助扩增的探针方法;借助扩增的探针法;探针法.扩增借助靶向扩增的探针方法;借助靶向扩增的探针法;探针法.扩增.靶向受检物呼吸系统（呼吸道）标本.上;上呼吸系统标本;上呼吸道标本呼吸道标本（样品、样本）;呼吸系统标本（样品、样本）在上面在上面的存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值）微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体）扩增型扩增性时刻;随机;随意;瞬间样品样本经过扩增的脱氧核糖核酸探针试样较高较高的遗传基因;遗传因子;吉恩;生物基因

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