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Part Descriptions

LP14398-9   Fungus
A fungus (plural fungi) is a eukaryotic organism that digests its food externally and absorbs the nutrient molecules into its cells. Along with bacteria, fungi are the primary decomposers of dead organic matter in most terrestrial ecosystems. Fungi have important symbiotic relationships with many other organisms. Over 90% of all plants engage in some kind of mycorrhizal relationship with fungi and are dependent upon this relationship for survival. Fungi are also used extensively by humans: yeasts are responsible for fermentation of beer and bread, and mushroom farming and gathering is a large industry in many countries. The branch of biology involving the study of fungi is known as mycology. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Fungus (Wikipedia)

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Fungus:Prid:Pt:Isolate:Nom:Sequencing
Long Common Name
Fungus identified in Isolate by Sequencing
Short Name
Fungus Islt Seq
Display Name
Fungus identified Sequencing Nom (Isol)
Consumer Name Alpha Get Info
Fungal test

Part Model Get Info

  • Component
    Fungus
    LP14398-9
    • Analyte
      Fungus
      LP14398-9
      • Component Numerator
        Fungus
        LP14398-9
        • Component Numerator Core
          Fungus
          LP14398-9
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Prid
    LP6850-4
  • Time
    Pt
    LP6960-1
  • System
    Isolate
    LP7370-2
    • System Core
      Isolate
      LP7370-2
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Example Answer List: LL5995-7

Source: Centers for Disease Control and Prevention
AnswerCodeScoreAnswer ID
Absidia corymbiferaLA32431-1
Aspergillus spLA28337-6
Aspergillus fumigatusLA19329-4
Aspergillus terreusLA19331-0
Beauveria bassianaLA32407-1
Blastomyces dermatitidisLA32406-3
Blastomyces spLA28339-2
Candida albicansLA32401-4
Coccidioides spLA28338-4
Candida aurisLA32402-2
Cryptococcus spLA28340-0
Cryptococcus neoformansLA29397-9
Dematiaceous mold - no further identificationLA32446-9
Exserohilum rostratumLA32408-9
Fusarium moniliformeLA32435-2
Histoplasma spLA28341-8
Histoplasma capsulatumLA32405-5
Irpex lacteusLA32409-7
Ramularia spLA32445-1
Rhodotorula rubraLA32447-7

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.71
Last Updated
Version 2.78 (NAM)
Change Reason
Release 2.78: COMPONENT: Removed "Identified" from the component because it is implied by the Property "Prid";
Order vs. Observation
Observation

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Houba:Přítomnost nebo identita:Časový bod:Izolát:Nominální:Sekvenace
el-GRGreek (Greece)Μύκητας:Prid:Pt:Απομονωμένο στέλεχος:Nom:Αλληλούχιση
Synonyms: MICRO Nom Prid Pt Αλληλούχιση Απομονωμένο στέλεχος Μύκητας
es-ESSpanish (Spain)Hongos:Presencia o identidad:Punto temporal:Aislado:Nom:Secuenciación
fr-CAFrench (Canada)Champignon:Présence ou identité:Temps ponctuel:Isolat:Nominal:Séquençage
fr-BEFrench (Belgium)Champignon:Présence ou identité:Temps ponctuel:Isolat:Nominal:Séquençage
fr-FRFrench (France)Champignon:Identification:Ponctuel:Isolat:Résultat nominal:Séquençage
it-ITItalian (Italy)Fungo:Prid:Pt:Isolato:Nom:Sequenziamento
Synonyms: Microbiologia Presenza o Identità Punto nel tempo (episodio)
nl-NLDutch (Netherlands)schimmels:identificator:moment:isolaat:nominaal:sequencing
pl-PLPolish (Poland)Grzyb:obecność lub identyfikacja:punkt w czasie:izolat:skala nominalna:sekwencjonowanie
Synonyms: Grzyb wynik kategorialny
tr-TRTurkish (Turkey)Mantar:MevcKimlik:Zmlı:İzolat:Snf:Sekanslama
Synonyms: Dizi tayini
zh-CNChinese (China)真菌:存在与否或特征标识:时间点:分离株:名义型:序列测定
Synonyms: 分离物;分离菌;分离菌株;隔离种群 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 真菌类;蕈;蘑菇;霉菌

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=98400-5