100157-7
SARS-CoV-2 (COVID-19) lineage [Type] in Specimen by Sequencing
Active
Term Description
SARS coronavirus 2 (SARS-CoV-2) lineage result based on a sequencing study. Results may be determined using the Pangolin lineage assignment application [https://cov-lineages.org/pangolin.html].
Source: Regenstrief LOINC
Part Descriptions
LP150045-5 Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977.[PMID: 271968] Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost.[PMID: 18576944] Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template.[PMID: 20858600]
Source: Regenstrief LOINC
LP422739-5 SARS coronavirus 2 lineage
Lineage nomenclatures are intended to provide a detailed level differentiation of viral mutations of SARS-CoV-2 over time. However, proposed lineage nomenclatures are not intended to portray every evolutionary change, but rather those associated with important epidemiological and biological events.[PMID:32669681] That being said they are not as broad-brushed as clades, but are expected to correspond to outbreaks.[PMID:32794443]
Source: Regenstrief LOINC
Fully-Specified Name
- Component
- SARS coronavirus 2 lineage
- Property
- Type
- Time
- Pt
- System
- XXX
- Scale
- Nom
- Method
- Sequencing
Additional Names
- Short Name
- SARS-CoV-2 lineage Spec Seq
- Display Name
- SARS-CoV-2 (COVID-19) lineage Sequencing Nom (Specimen)
- Consumer Name Alpha
- SARS-CoV-2 (COVID-19) lineage, Specimen
Example Answer List: LL5807-4
Source: LOINCAnswer | Code | Score | Answer ID |
---|---|---|---|
SARS-CoV-2 A.1.1 lineage | LA31701-8 | ||
SARS-CoV-2 B.1.1.238 lineage Also known as Nigerian variant |
LA31620-0 | ||
SARS-CoV-2 B.1.2 lineage | LA31703-4 | ||
SARS-CoV-2 B.1.1 lineage | LA31704-2 | ||
SARS-CoV-2 B.1.1.7 lineage Also known as WHO Alpha variant, and UK variant |
LA31705-9 | ||
SARS-CoV-2 B.1.29 lineage | LA31706-7 | ||
SARS-CoV-2 B.2.4 lineage | LA31702-6 | ||
SARS-CoV-2 B.1.351 lineage Also known as WHO Beta variant, GH/501Y.V2, and South Africa variant |
LA32553-2 | ||
SARS-CoV-2 P.1 lineage Also known as WHO gamma lineage, and Brazil variant |
LA32555-7 | ||
SARS-CoV-2 B.1.617.2 lineage Also known as WHO Delta variant |
LA32556-5 |
Basic Attributes
- Class
- MICRO
- Type
- Laboratory
- First Released
- Version 2.72
- Last Updated
- Version 2.72
- Order vs. Observation
- Both
Member of these Groups
LOINC Group | Group Name |
---|---|
LG51017-8 | SARSCoV2 detection |
LG51019-4 | SARSCoV2 molecular detection |
Language Variants
Tag | Language | Translation |
---|---|---|
es-ES | Spanish (Spain) | Linaje de SARS-CoV-2 (COVID-19): |
it-IT | Italian (Italy) | SARS coronavirus 2, lignaggio: Synonyms: |
de-DE | German (Germany) | SARS-Coronavirus 2 S-Abstammungslinie: |
zh-CN | Chinese (China) | SARS 冠状病毒 2 谱系: Synonyms: |
pl-PL | Polish (Poland) | linia rodowodowa SARS-CoV-2: Synonyms: |
nl-NL | Dutch (Netherlands) | SARS-CoV-2 lineage: Synonyms: |
LOINC Terminology Service (API) using HL7® FHIR®
Requests to this service require a free LOINC username and password. Below is a sample of the possible capabilities. See the LOINC Terminology Service documentation for more information.
- CodeSystem lookup
- https:
//fhir.loinc.org/CodeSystem/$lookup?system=http: //loinc.org&code=100157-7
LOINC Copyright
Copyright © 2023 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright