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Term Description

Include a variety of specimen types such as cultures, fixed skin biopsies, isolates, and others as determined by the diagnostician.

Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP269180-8   Fungal 18s rRNA gene
The fungal 18S rRNA gene is approximately 1900 base pairs. It contains eight variable regions (V1-5 and V7-9) as well as one highly conserved region (V6). The highly conserved region can be used in molecular assays to detect the presence of fungal pathogens, and the variable regions can be used to identify specific species as well as for phylogenetic analysis. PMID: 2903154 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Fungal 18S rRNA gene:Prid:Pt:XXX:Nom:Sequencing
Long Common Name
Fungal 18s rRNA gene [Identifier] in Specimen by Sequencing
Short Name
Fungal 18s rRNA gene Spec Seq
Display Name
Fungal 18s rRNA gene Sequencing Nom (Specimen)
Consumer Name Alpha Get Info
Fungal 18s RRNA gene, Specimen

Part Model Get Info

  • Component
    Fungal 18s rRNA gene
    LP269180-8
    • Analyte
      Fungal 18s rRNA gene
      LP269180-8
      • Component Numerator
        Fungal 18s rRNA gene
        LP269180-8
        • Component Numerator Core
          Fungal 18s rRNA gene
          LP269180-8
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    Prid
    LP6850-4
  • Time
    Pt
    LP6960-1
  • System
    XXX
    LP7735-6
    • System Core
      XXX
      LP7735-6
    • Super System
      NULL
       
  • Scale
    Nom
    LP7750-5
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.74
Last Updated
Version 2.75 (MIN)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Houby gen 18s rRNA:Přítomnost nebo identita:Časový bod:XXX:Nominální:Sekvenace
el-GRGreek (Greece)Μυκητιακό γονίδιο 18s rRNA:Prid:Pt:XXX:Nom:Αλληλούχιση
Synonyms: MICRO Nom Prid Pt XXX Αλληλούχιση Γονίδιο Μυκητιακό γονίδιο 18s rRNA
es-ESSpanish (Spain)Gen RNA 18s fúngico:Presencia o identidad:Punto temporal:XXX:Nom:Secuenciación
fr-FRFrench (France)Champignon ARNr gène 18S:Identification:Ponctuel:Milieux divers:Résultat nominal:Séquençage
it-ITItalian (Italy)Fungino, gene 18s rRNA:Prid:Pt:XXX:Nom:Sequenziamento
Synonyms: Gene 18s rRNA fungino Microbiologia Presenza o Identità Punto nel tempo (episodio)
nl-NLDutch (Netherlands)fungaal 18s rRNA-gen:identificator:moment:XXX:nominaal:sequencing
pl-PLPolish (Poland)Gen 18s rRNA u grzybów:obecność lub identyfikacja:punkt w czasie:XXX:skala nominalna:sekwencjonowanie
Synonyms: wynik kategorialny
zh-CNChinese (China)真菌 18s rRNA 基因:存在与否或特征标识:时间点:XXX:名义型:序列测定
Synonyms: 不明的;其他;将在相应消息内其他部分之中加以详细说明;未作详细说明的;未作说明的;未做说明的标本;未加规定的;未加说明的标本;杂项 分类型应答;分类型结果;名义性;名称型;名词型;名词性;标称性;没有自然次序的名义型或分类型应答 存在;存在与否;特征标识;身份;身份标识 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 核蛋白体 RNA 核蛋白体 RNA（Ribosomal RNA，RRNA） 核蛋白体核糖核酸 核醣体 RNA 遗传基因;遗传因子;吉恩;生物基因

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=101534-6