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Part Descriptions

LP150045-5   Sequencing
Sequencing is a method used to determine the sequence of individual genes, larger genetic regions (i.e. clusters of genes or operons), full chromosomes or entire genomes. Historically, most sequencing has been performed using the chain termination method developed by Frederick Sanger in 1977. PMID: 271968 Sequencing technologies have improved dramatically, making them cheaper, faster, and more accurate. Next-generation sequencing (NGS), also known as high-throughput sequencing, deep sequencing, and second-generation sequencing, is a type of technology that uses parallel sequencing of multiple small fragments of DNA to determine sequence. This "high-throughput" technology has increased the speed and amount of DNA sequenced at a significantly reduced cost. PMID: 18576944 Several NGS platforms (ie, sequencing instruments and associated reagents) have been developed. Third-generation sequencing is another methodology currently under development that uses parallel sequencing similar to NGS. In contrast to NGS, third-generation sequencing uses single DNA molecules rather than amplified DNA as a template. PMID: 20858600 Source: Regenstrief LOINC

LP269179-0   Fungal ITS region
The internal transcribed spacer (ITS) region of ribosomal DNA is present across a variety of bacterial and fungal pathogens. The ITS region includes ITS1 and ITS2, and plays a role in RNA processing. PMID: 25648500 The ITS region contains portions that are highly conserved across species as well as those that are species-specific. Assays targeting the conserved portion can be used to detect the presence of a pathogen, and if a pathogen is detected, further testing to determine the specific organism present is performed. PMID: 18008085 Source: Regenstrief LOINC

LOINC Names Get Info

Fully-Specified Name
Fungal ITS region:PrThr:Pt:Specimen:Ord:Sequencing
Long Common Name
Fungal ITS region [Presence] in Specimen by Sequencing
Short Name
Fungal ITS region Spec Ql Seq
Display Name
Fungal ITS region Sequencing Ql (Spec)
Consumer Name Alpha Get Info
Fungal ITS Region, Specimen

Part Model Get Info

  • Component
    Fungal ITS region
    LP269179-0
    • Analyte
      Fungal ITS region
      LP269179-0
      • Component Numerator
        Fungal ITS region
        LP269179-0
        • Component Numerator Core
          Fungal ITS region
          LP269179-0
        • Component Numerator Core Suffix
          NULL
           
      • Component Denominator
        NULL
         
        • Component Denominator Core
          NULL
           
        • Component Denominator Core Suffix
          NULL
           
    • Challenge
      NULL
       
    • Adjustment
      NULL
       
    • Count
      NULL
       
  • Property
    PrThr
    LP217195-9
  • Time
    Pt
    LP6960-1
  • System
    Specimen
    LP7593-9
    • System Core
      Specimen
      LP7593-9
    • Super System
      NULL
       
  • Scale
    Ord
    LP7751-3
  • Method
    Sequencing
    LP150045-5

Basic Attributes

Class
MICRO
Type
Laboratory
First Released
Version 2.78
Last Updated
Version 2.78 (ADD)
Order vs. Observation
Both

Language Variants Get Info

TagLanguageTranslation
cs-CZCzech (Czechia)Houby ITS region:Přítomnost nebo práh:Časový bod:Vzorek:Ordinální:Sekvenace
el-GRGreek (Greece)Μυκητιακή περιοχή εσωτερικού μεταγραφόμενου διαχωριστή:PrThr:Pt:Δείγμα:Ord:Αλληλούχιση
Synonyms: MICRO Ord PrThr Pt Αλληλούχιση Δείγμα Μυκητιακή περιοχή εσωτερικού μεταγραφόμενου διαχωριστή Περιοχή
es-ESSpanish (Spain)Región ITS fúngica:PrThr:Punto temporal:Especimen:Ord:Secuenciación
fr-FRFrench (France)Champignon région ITS:Présence/Seuil:Ponctuel:Prélèvement:Qualitatif:Séquençage
it-ITItalian (Italy)Fungina, regione ITS:PrThr:Pt:Campione:Ord:Sequenziamento
Synonyms: Microbiologia Presenza o Soglia Punto nel tempo (episodio) Regione ITS fungina
zh-CNChinese (China)真菌内转录间隔区:存在情况或阈值:时间点:标本:序数型:序列测定
Synonyms: 供检查用的材料;待检物;待试验物;样品;样本;试料;试样 依次型;分类顺序型;定性的;序数型（或称等级型）;性质上的;有序型;有序性分类应答;有序性分类结果;秩次型;等级型;筛查;顺序型 区;地区;局部 受检物 存在情况;存在;存在与否;是否存在;阈值;界值;界限;阀值;临界值;存在情况（存在、存在与否、是否存在）或阈值（界值、界限、阀值、临界值） 序列分析;测序 微生物学;微生物学试验;微生物学试验（培养、DNA、抗原及抗体） 时刻;随机;随意;瞬间 样品 样本 真菌 ITS 区域;内转录间隔区;内部可转录间隔;内转录区域;Internal transcribed spacer;ITS 试样

LOINC Terminology Service (API) using HL7® FHIR® Get Info

CodeSystem lookup
https://fhir.loinc.org/CodeSystem/$lookup?system=http://loinc.org&code=105012-9