48014-5
Sequence variation panel - Blood or Tissue by Molecular genetics method
Active
48004-6 DNA change (c.HGVS)
Term Description
Human Genome Variation Society (HGVS) nomenclature for a single DNA marker. The use of the nomenclature must be extended to describe non-variations (aka. wild types) see samples for wild type examples.
Observation Required in Panel
Conditional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- DNA change
- Property
- Find
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.73 (MIN)
- Change Reason
- Updated LCN per CJM for HL7 CG IG; Changed Component from "DNA sequence variation" to conform with the balloted HL7 v2 IG
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 8938
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 77313-5 | DNA analysis discrete sequence variation basic associated observations panel - Blood or Tissue by Molecular genetics method |
| 53044-4 | DNA marker identified panel |
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 48015-2 | Individual allele panel |
| 51975-1 | Individual allele results panel |
| 81247-9 | Master HL7 genetic variant reporting panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | DNA změna: |
| el-GR | Greek (Greece) | Αλλαγή DNA: Synonyms: DNA HL7.GENETICS Nom Pt Αίμα Αίμα/Ιστός Αλλαγή DNA Εύρεση Ιστός Μοριακή γενετική |
| es-ES | Spanish (Spain) | Cambio del ADN: |
| es-MX | Spanish (Mexico) | Cambio de ADN: |
| fr-FR | French (France) | ADN variation: |
| it-IT | Italian (Italy) | DNA, cambio: Synonyms: Cambio di DNA Genetica molecolare Osservazione Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| pl-PL | Polish (Poland) | Zmiana w DNA: Synonyms: diagnostyka molekularna Kwas deoksyrybonukleinowy wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Variação da sequência de DNA: Synonyms: ; |
| zh-CN | Chinese (China) | DNA 变化: Synonyms: DNA 改变 HL7 遗传学 全血或组织; |
48019-4 DNA change type
Term Description
Codified type for associated DNA Marker. DNA Marker's use the HGVS notation which implies the DNA Marker Type, but the concurrent use of this code will allow a standard and explicit type for technical and display convenience.
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- DNA change type
- Property
- Type
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.64 (NAM)
- Change Reason
- Updated LCN per CJM for HL7 CG IG; Changed Component from "DNA sequence variation type" to conform with balloted HL7 v2 IG
- Order vs. Observation
- Observation
Preferred Answer List LL379-9
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Wild type | LA9658-1 | ||
| Deletion | LA6692-3 | ||
| Duplication | LA6686-5 | ||
| Insertion | LA6687-3 | ||
| Insertion/Deletion | LA6688-1 | ||
| Inversion | LA6689-9 | ||
| Substitution | LA6690-7 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 53042-8 | DNA marker assessed panel |
| 53044-4 | DNA marker identified panel |
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 48015-2 | Individual allele panel |
| 51975-1 | Individual allele results panel |
| 81247-9 | Master HL7 genetic variant reporting panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | DNA změna typ: |
| el-GR | Greek (Greece) | Τύπος αλλαγής DNA: Synonyms: DNA HL7.GENETICS Nom Pt Type Αίμα Αίμα/Ιστός Αλλαγή DNA Ιστός Μοριακή γενετική Τύπος αλλαγής DNA |
| es-ES | Spanish (Spain) | Tipo de cambio del ADN: |
| es-MX | Spanish (Mexico) | Tipo de cambio de ADN: |
| fr-CA | French (Canada) | Type de variation de l'ADN: |
| fr-FR | French (France) | ADN type de variation: |
| it-IT | Italian (Italy) | DNA, cambio tipo: Synonyms: Cambio di DNA Cambio tipo di DNA Genetica molecolare Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| pl-PL | Polish (Poland) | Typ zmiany DNA: Synonyms: diagnostyka molekularna Kwas deoksyrybonukleinowy Rodzaj zmiany w DNA wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Tipo de variação de sequência de DNA: Synonyms: ; |
| zh-CN | Chinese (China) | DNA 变化类型: Synonyms: DNA 改变 DNA 改变类型 HL7 遗传学 全血或组织; |
48005-3 Amino acid change (pHGVS)
Term Description
Human Genome Variation Society (HGVS) nomenclature for an amino acid sequence. This value is derivable from the DNA Marker value if available. It is provided for convenience. The use of the nomenclature must be extended to describe non-variations (aka. wild types) see samples for wild type examples.
Observation Required in Panel
Conditional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Amino acid change
- Property
- Find
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.73 (MIN)
- Change Reason
- Updated LCN per CJM for HL7 CG IG
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 4958
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 53042-8 | DNA marker assessed panel |
| 53044-4 | DNA marker identified panel |
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 48015-2 | Individual allele panel |
| 51975-1 | Individual allele results panel |
| 81247-9 | Master HL7 genetic variant reporting panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Aminokyselina změna: |
| el-GR | Greek (Greece) | Αλλαγή αμινοξέων: Synonyms: HL7.GENETICS Nom Pt Αίμα Αίμα/Ιστός Αλλαγή αμινοξέων Εύρεση Ιστός Μοριακή γενετική |
| es-ES | Spanish (Spain) | cambio aminoacídico: |
| es-MX | Spanish (Mexico) | Cambio de aminoácidos: |
| fr-FR | French (France) | Acides aminés substitués: |
| it-IT | Italian (Italy) | Aminoacido, cambio: Synonyms: Cambio di aminoacido Genetica molecolare Osservazione Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| nl-NL | Dutch (Netherlands) | aminozuurwijziging: Synonyms: molgen |
| pl-PL | Polish (Poland) | Zmiana aminokwasu: Synonyms: diagnostyka molekularna wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Mudança de amino ácido: Synonyms: Finding; |
| ru-RU | Russian (Russian Federation) | Аминокислота изменение: Synonyms: Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | Amino asit değişimi: |
| zh-CN | Chinese (China) | 氨基酸变化: Synonyms: HL7 遗传学 全血或组织; |
48006-1 Amino acid change [Type]
Term Description
Codified type for associated Amino Acid Marker. Amino Acid Marker's use the HGVS notation which implies the Amino Acid Marker Type, but the concurrent use of this code will allow a standard and explicit type for technical and display convenience.
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Amino acid change type
- Property
- Type
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.58 (MIN)
- Order vs. Observation
- Observation
Preferred Answer List LL380-7
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Wild type | LA9658-1 | ||
| Deletion | LA6692-3 | ||
| Duplication | LA6686-5 | ||
| Frameshift | LA6694-9 | ||
| Initiating Methionine | LA6695-6 | ||
| Insertion | LA6687-3 | ||
| Insertion and Deletion | LA9659-9 | ||
| Missense | LA6698-0 | ||
| Nonsense | LA6699-8 | ||
| Silent | LA6700-4 | ||
| Stop Codon Mutation | LA6701-2 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 53042-8 | DNA marker assessed panel |
| 53044-4 | DNA marker identified panel |
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 48015-2 | Individual allele panel |
| 51975-1 | Individual allele results panel |
| 81247-9 | Master HL7 genetic variant reporting panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Aminokyselina změna typ: |
| el-GR | Greek (Greece) | Τύπος αλλαγής αμινοξέων: Synonyms: HL7.GENETICS Nom Pt Type Αίμα Αίμα/Ιστός Αλλαγή αμινοξέων Ιστός Μοριακή γενετική Τύπος αλλαγής αμινοξέων |
| es-ES | Spanish (Spain) | Tipo de cambio aminoacídico: |
| es-MX | Spanish (Mexico) | Tipo de cambio de aminoácidos: |
| fr-FR | French (France) | Acides aminés type de substitution: |
| it-IT | Italian (Italy) | Aminoacido, cambio tipo: Synonyms: Cambio di aminoacido Cambio tipo di aminoacido Genetica molecolare Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| nl-NL | Dutch (Netherlands) | aminozuurwijzigingstype: Synonyms: molgen soort |
| pl-PL | Polish (Poland) | Typ zmiany aminokwasu: Synonyms: diagnostyka molekularna wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Tipo de mudança de amino ácido: Synonyms: Typ; |
| ru-RU | Russian (Russian Federation) | Аминокислота изменение тип: Synonyms: Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | Amino asit değişimi tipi: Synonyms: Tür |
| zh-CN | Chinese (China) | 氨基酸变化类型: Synonyms: HL7 遗传学 全血或组织; |
47997-2 Genetic variant clinical significance [Interpretation] in Blood or Tissue by Molecular genetics method
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Genetic variant clinical significance
- Property
- Imp
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- MOLPATH.MISC
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.73 (MIN)
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 18483
Normative Answer List LL377-3
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Pathogenic | LA6668-3 | ||
| Presumed Pathogenic | LA6669-1 | ||
| Novel Presumed Pathogenic | LA6670-9 | ||
| Novel Unknown Significance | LA6671-7 | ||
| Novel Presumed Benign | LA6672-5 | ||
| Novel | LA6673-3 | ||
| Presumed Benign | LA6674-1 | ||
| Benign | LA6675-8 | ||
| Resistant | LA6676-6 | ||
| Responsive | LA6677-4 | ||
| Novel Presumed Non-Responsive | LA6678-2 | ||
| Novel Presumed Responsive | LA6679-0 | ||
| Unclassified | LA6680-8 | ||
| Polymorphism | LA6681-6 | ||
| Unknown Significance | LA6682-4 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Genetická varianta klinický význam: |
| el-GR | Greek (Greece) | Κλινική σημασία γενετικής παραλλαγής: Synonyms: Imp MISC MOLPATH MOLPATH.MISC Nom Pt Αίμα Αίμα/Ιστός Ιστός Κλινική σημασία γενετικής παραλλαγής Μοριακή γενετική |
| es-ES | Spanish (Spain) | Significado clínico de variante genética: |
| es-MX | Spanish (Mexico) | Importancia clínica de la variante genética: |
| fr-FR | French (France) | Variant génétique signification clinique: |
| it-IT | Italian (Italy) | Variante genetica, significato clinico: Synonyms: Genetica molecolare Impressione/interpretazione di studio Miscellanea Miscellanea geni Patologia molecolare Punto nel tempo (episodio) Sangue Sangue o Tessuto Significato clinico di variante genetica Tessuto & |
| nl-NL | Dutch (Netherlands) | genetische variant klinische significantie: Synonyms: molgen |
| pl-PL | Polish (Poland) | Wariant geneteczny klinicznie istotny: Synonyms: diagnostyka molekularna Wariant genteczny o klinicznej istotności wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Significado da variação genética clínica: Synonyms: ; |
| ru-RU | Russian (Russian Federation) | Генетический вариант клиническая значимость: Synonyms: Впечатление/интерпретация исследования Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | Genetik varyant klinik anlamlılık: |
| zh-CN | Chinese (China) | 遗传变异临床意义: Synonyms: 全血或组织; |
47998-0 DNA sequence variation display name [Text] Narrative
Term Description
Thumbnail "textual display" convention of a single DNA Marker and its interpretation.
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- DNA sequence variation display name
- Property
- Txt
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nar
- Method
- Molgen
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.56 (MIN)
- Order vs. Observation
- Observation
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | DNA sekvenční varianta zobrazovaný název: |
| el-GR | Greek (Greece) | Όνομα εμφάνισης παραλλαγής αλληλουχίας DNA: Synonyms: DNA HL7.GENETICS Nar Pt Txt Αίμα Αίμα/Ιστός Ιστός Μοριακή γενετική Όνομα Όνομα εμφάνισης παραλλαγής αλληλουχίας DNA |
| es-ES | Spanish (Spain) | Nombre de la variante de secuencia de ADN: Synonyms: Cambio ADN |
| es-MX | Spanish (Mexico) | Nombre para mostrar de la variación de la secuencia de ADN: |
| fr-FR | French (France) | ADN nom de la variation de séquence: |
| it-IT | Italian (Italy) | DNA, display name variazione sequenza: Synonyms: Genetica molecolare Nome visualizzato di variazione di sequenza del DN Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| nl-NL | Dutch (Netherlands) | DNA weergave van de naam van de sequentievariatie: Synonyms: molgen |
| pl-PL | Polish (Poland) | Wyświetlana nazwa wariantów sekwencji DNA: Synonyms: diagnostyka molekularna Kwas deoksyrybonukleinowy Nazwa zmiany w sekwencji DNA |
| pt-BR | Portuguese (Brazil) | Nome da sequência de DNA a apresentar variação: Synonyms: ; |
| ru-RU | Russian (Russian Federation) | ДНК последовательность вариация отображаемое наименование: Synonyms: Кровь Кровь или Ткань Описательный Текст Ткань и мазки Точка во времени; |
| tr-TR | Turkish (Turkey) | DNA sekans varyasyonu görünen adı: |
| zh-CN | Chinese (China) | DNA 序列变异显示名称: Synonyms: HL7 遗传学 全血或组织; |
48002-0 Genomic source class [Type]
Term Description
The genomic class of the variant: Germline for inherited genome, somatic for cancer genome, and prenatal for fetal genome.
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Genomic source class
- Property
- Type
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.82 (MIN)
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 14631
Preferred Answer List LL378-1
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Germline | LA6683-2 | ||
| Somatic | LA6684-0 | ||
| Fetal | LA10429-1 | ||
| Likely germline | LA18194-3 | ||
| Likely somatic | LA18195-0 | ||
| Likely fetal | LA18196-8 | ||
| Unknown genomic origin | LA18197-6 | ||
| De novo | LA26807-0 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 62389-2 | Chromosome analysis master panel |
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 51966-0 | Genetic disease DNA analysis panel |
| 51975-1 | Individual allele results panel |
| 81247-9 | Master HL7 genetic variant reporting panel |
| 51962-9 | Pharmacogenetic DNA analysis panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Genomový zdroj třída: |
| el-GR | Greek (Greece) | Κατηγορία γονιδιωματικής πηγής: Synonyms: HL7.GENETICS Nom Pt Type Αίμα Αίμα/Ιστός Ιστός Κατηγορία Κατηγορία γονιδιωματικής πηγής Μοριακή γενετική |
| es-ES | Spanish (Spain) | Origen de la clase genómica: |
| es-MX | Spanish (Mexico) | Clase de fuente genómica: |
| fr-FR | French (France) | Source génomique: |
| it-IT | Italian (Italy) | Classe fonte Genomica: Synonyms: Genetica molecolare Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| nl-NL | Dutch (Netherlands) | genomische bronklasse: Synonyms: molgen |
| pl-PL | Polish (Poland) | Klasa zasobów genomowych: Synonyms: diagnostyka molekularna Kategoria zasobów genomicznych wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Classe da fonte Genomic: Synonyms: Genetic variant source; |
| ru-RU | Russian (Russian Federation) | Геномный источник класс: Synonyms: Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | Genomik kaynak sınıfı: Synonyms: Tür |
| zh-CN | Chinese (China) | 基因组来源类: Synonyms: HL7 遗传学 全血或组织; |
48007-9 Genetic variant allelic state [Type] in Blood or Tissue by Molecular genetics method
Term Description
Example answer: 1^Heteroplasmic ^LA
Definition: When information about the state of each of the paired genes is important (e.g. because it may only have an effect if homozygous) - report that information here
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Genetic variant allelic state
- Property
- Type
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- MOLPATH.MISC
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.26 (MIN)
- Order vs. Observation
- Observation
Normative Answer List LL381-5
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Heteroplasmic | LA6703-8 | ||
| Homoplasmic | LA6704-6 | ||
| Homozygous | LA6705-3 | ||
| Heterozygous | LA6706-1 | ||
| Hemizygous | LA6707-9 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Genetická varianta stav alel: |
| el-GR | Greek (Greece) | Κατάσταση αλληλόμορφων γενετικών παραλλαγών: Synonyms: MISC MOLPATH MOLPATH.MISC Nom Pt Type Αίμα Αίμα/Ιστός Ιστός Κατάσταση Κατάσταση αλληλομόρφων Κατάσταση αλληλόμορφων γενετικών παραλλαγών Μοριακή γενετική |
| es-ES | Spanish (Spain) | Variante genético estado alélico: |
| es-MX | Spanish (Mexico) | Estado alélico de variante genética: |
| fr-FR | French (France) | Variant génétique état allélique: |
| it-IT | Italian (Italy) | Variante genetica, stato allelico: Synonyms: Genetica molecolare Miscellanea Miscellanea geni Patologia molecolare Punto nel tempo (episodio) Sangue Sangue o Tessuto Stato allelico di variante genetica Tessuto & |
| nl-NL | Dutch (Netherlands) | genetische variant allelische status: Synonyms: molgen |
| pl-PL | Polish (Poland) | Status alleliczny wariantu genetycznego: Synonyms: diagnostyka molekularna wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Estado da variação genética alélica: Synonyms: Typ; |
| ru-RU | Russian (Russian Federation) | Генетический вариант аллельное состояние: Synonyms: Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | Genetik varyant allelik durum: Synonyms: Tür |
| zh-CN | Chinese (China) | 遗传变异等位基因状态: Synonyms: 全血或组织; |
48003-8 DNA sequence variation identifier [Identifier]
Term Description
A DNA Marker identifier conveys a universal or standard repository identifier for definitive characterstics of a DNA Marker. (recommend using NCBI dbSNP ids - rs#)
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- DNA sequence variation identifier
- Property
- ID
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.73 (MIN)
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 14222
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 53042-8 | DNA marker assessed panel |
| 53044-4 | DNA marker identified panel |
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 48015-2 | Individual allele panel |
| 51975-1 | Individual allele results panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | DNA sekvenční varianta identifikátor: |
| el-GR | Greek (Greece) | Αναγνωριστικό παραλλαγής αλληλουχίας DNA: Synonyms: DNA HL7.GENETICS Nom Pt Αίμα Αίμα/Ιστός Αναγνωριστικό Αναγνωριστικό παραλλαγής αλληλουχίας DNA Ιστός Μοριακή γενετική |
| es-ES | Spanish (Spain) | Identificador variante de secuencia de ADN: Synonyms: Cambio ADN |
| es-MX | Spanish (Mexico) | Identificador de variación de secuencia de ADN: |
| fr-FR | French (France) | ADN identifiant de la variation de séquence: |
| it-IT | Italian (Italy) | DNA, identificatore variazione sequenza: Synonyms: Genetica molecolare Identificatore Identificatore di variazione di sequenza del DNA Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| nl-NL | Dutch (Netherlands) | DNA sequentievariatie identificator: Synonyms: molgen |
| pl-PL | Polish (Poland) | Identyfikator wariantów sekwencji DNA: Synonyms: diagnostyka molekularna Kwas deoksyrybonukleinowy wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Identificador de variação da seqüência do DNA: Synonyms: ; |
| ru-RU | Russian (Russian Federation) | ДНК последовательность вариация идентификатор: Synonyms: Идентификатор Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | DNA sekans varyasyonu tanımalayıcı: |
| zh-CN | Chinese (China) | DNA 序列变异标识符: Synonyms: HL7 遗传学 全血或组织; |
48018-6 Gene studied [ID]
Term Description
HUGO Gene Nomenclature Committee (HGNC) identifier for a gene. List the gene(s) examined in full or in part by the study. If the study addresses multiple genes, these can be recorded in one OBX as a list seperated by repeat delimiters or in mulltiple OBX's with one gene per OBX. The recommended coding system will use the HGNC gene symbol as the display text and HGNC gene ID as the code. For example, 21497^ACAD9^HGNC.
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Gene identifier
- Property
- ID
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.73 (MIN)
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 9796
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 77313-5 | DNA analysis discrete sequence variation basic associated observations panel - Blood or Tissue by Molecular genetics method |
| 53042-8 | DNA marker assessed panel |
| 53044-4 | DNA marker identified panel |
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 111577-3 | Hematologic malignancy gene fusion panel - Specimen by Molecular genetics method |
| 48015-2 | Individual allele panel |
| 51975-1 | Individual allele results panel |
| 81247-9 | Master HL7 genetic variant reporting panel |
| 78046-0 | Pharmacogenomic analysis basic associated observations panel - Blood or Tissue |
| 102118-7 | Rhabdomyolysis and Metabolic myopathy multigene panel - Blood or Tissue by Molecular genetics method |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
| 48017-8 | Sequencing methodology panel - Blood or Tissue by Molecular genetics method |
| 102119-5 | Skeletal muscle channelopathy multigene panel - Blood or Tissue by Molecular genetics method |
| 74028-2 | Virtual Medical Record for Clinical Decision Support panel HL7.VMR-CDS |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Gen zkoumaný identifikátor: |
| el-GR | Greek (Greece) | Αναγνωριστικό γονιδίου: Synonyms: HL7.GENETICS Nom Pt Αίμα Αίμα/Ιστός Αναγνωριστικό Αναγνωριστικό γονιδίου Γονίδιο Ιστός |
| es-ES | Spanish (Spain) | Identificador genético: |
| es-MX | Spanish (Mexico) | Identificador de gen estudiado: |
| fr-FR | French (France) | Gène identifiant: |
| it-IT | Italian (Italy) | Gene, identificatore: Synonyms: Identificatore Identificatore del gene Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| nl-NL | Dutch (Netherlands) | gen-identificator: |
| pl-PL | Polish (Poland) | Identyfikator genu: Synonyms: wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Identificação do gene: Synonyms: ; |
| ru-RU | Russian (Russian Federation) | Ген идентификатор: Synonyms: Идентификатор Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | Gen tanımlayıcı: |
| zh-CN | Chinese (China) | 基因标识符: Synonyms: HL7 遗传学 全血或组织; |
47999-8 DNA region name [Identifier]
Term Description
A human readable name for the region of interest. Typically Exon #, Intron # or other. NOTE: This is not standardized and is mainly for convenience and display purposes.
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- DNA region name
- Property
- ID
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- HL7.GENETICS
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.73 (MIN)
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 16923
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 53042-8 | DNA marker assessed panel |
| 53044-4 | DNA marker identified panel |
| 51960-3 | DNA marker results panel |
| 55233-1 | Genetic analysis master panel |
| 48015-2 | Individual allele panel |
| 51975-1 | Individual allele results panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
| 48017-8 | Sequencing methodology panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | DNA oblast název: |
| el-GR | Greek (Greece) | Όνομα περιοχής DNA: Synonyms: DNA HL7.GENETICS Nom Pt Αίμα Αίμα/Ιστός Αναγνωριστικό Ιστός Μοριακή γενετική Όνομα Όνομα περιοχής DNA Περιοχή |
| es-ES | Spanish (Spain) | Nombre de la región de ADN: |
| es-MX | Spanish (Mexico) | Nombre de la región de ADN: |
| fr-FR | French (France) | ADN nom de la région: |
| it-IT | Italian (Italy) | DNA, nome regione: Synonyms: Genetica molecolare Identificatore Nome di regione del DNA Punto nel tempo (episodio) Referto clinico di test genetico Sangue Sangue o Tessuto Tessuto & |
| nl-NL | Dutch (Netherlands) | DNA regionaam: Synonyms: molgen |
| pl-PL | Polish (Poland) | Nazwa regionu DNA: Synonyms: diagnostyka molekularna Identyfikator ocenianego regionu DNA Kwas deoksyrybonukleinowy wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Nome da região do DNA: Synonyms: Gene region; |
| ru-RU | Russian (Russian Federation) | ДНК зона наименование: Synonyms: Идентификатор Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | DNA bölge adı: |
| zh-CN | Chinese (China) | DNA 区域名称: Synonyms: HL7 遗传学 全血或组织; |
48000-4 Chromosome [Identifier] in Blood or Tissue by Molecular genetics method
Term Description
A number from 1 to 22, X or Y identifying the chromosome in which the gene or region of interest resides.
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Chromosome
- Property
- ID
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- MOLPATH.MISC
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.73 (MIN)
- Change Reason
- Component name was confusing since sex chromosomes (X & Y) are not numbers. Updated description for more clarification and added an answer list.
- Order vs. Observation
- Observation
- Common Test Rank Get Info
- 7755
Example Answer List LL2938-0
| Answer | Code | Score | Answer ID |
|---|---|---|---|
| Chromosome 1 | LA21254-0 | ||
| Chromosome 2 | LA21255-7 | ||
| Chromosome 3 | LA21256-5 | ||
| Chromosome 4 | LA21257-3 | ||
| Chromosome 5 | LA21258-1 | ||
| Chromosome 6 | LA21259-9 | ||
| Chromosome 7 | LA21260-7 | ||
| Chromosome 8 | LA21261-5 | ||
| Chromosome 9 | LA21262-3 | ||
| Chromosome 10 | LA21263-1 | ||
| Chromosome 11 | LA21264-9 | ||
| Chromosome 12 | LA21265-6 | ||
| Chromosome 13 | LA21266-4 | ||
| Chromosome 14 | LA21267-2 | ||
| Chromosome 15 | LA21268-0 | ||
| Chromosome 16 | LA21269-8 | ||
| Chromosome 17 | LA21270-6 | ||
| Chromosome 18 | LA21271-4 | ||
| Chromosome 19 | LA21272-2 | ||
| Chromosome 20 | LA21273-0 | ||
| Chromosome 21 | LA21274-8 | ||
| Chromosome 22 | LA21275-5 | ||
| Chromosome X | LA21276-3 | ||
| Chromosome Y | LA21277-1 |
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Chromozom: |
| el-GR | Greek (Greece) | Χρωμόσωμα: Synonyms: MISC MOLPATH MOLPATH.MISC Nom Pt Αίμα Αίμα/Ιστός Αναγνωριστικό Ιστός Μοριακή γενετική Χρωμόσωμα |
| es-ES | Spanish (Spain) | Cromosoma: |
| es-MX | Spanish (Mexico) | Cromosoma: |
| fr-FR | French (France) | Chromosome: |
| it-IT | Italian (Italy) | Cromosoma: Synonyms: Genetica molecolare Identificatore Miscellanea Miscellanea geni Patologia molecolare Punto nel tempo (episodio) Sangue Sangue o Tessuto Tessuto & |
| nl-NL | Dutch (Netherlands) | chromosoom: Synonyms: molgen |
| pl-PL | Polish (Poland) | Chromosom: Synonyms: diagnostyka molekularna wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Número do cromossomo: Synonyms: Num; |
| ru-RU | Russian (Russian Federation) | Хромосома: Synonyms: Идентификатор Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | Kromozom: |
| zh-CN | Chinese (China) | 染色体: Synonyms: 全血或组织; |
48001-2 Cytogenetic (chromosome) location
Observation Required in Panel
Optional
Type of Entry
Question expects user entry - requires response [Q]
Fully-Specified Name
- Component
- Chromosome region
- Property
- ID
- Time
- Pt
- System
- Bld/Tiss
- Scale
- Nom
- Method
- Molgen
Basic Attributes
- Class
- MOLPATH.MISC
- Type
- Laboratory
- First Released
- Version 2.21
- Last Updated
- Version 2.58 (MIN)
- Change Reason
- Updated LCN per CJM for HL7 CG IG
- Order vs. Observation
- Observation
Member of these Panels
| LOINC | Long Common Name |
|---|---|
| 81247-9 | Master HL7 genetic variant reporting panel |
| 48014-5 | Sequence variation panel - Blood or Tissue by Molecular genetics method |
Language Variants Get Info
| Tag | Language | Translation |
|---|---|---|
| cs-CZ | Czech (Czechia) | Lokalizace cytogenetická: |
| el-GR | Greek (Greece) | Χρωμοσωμική περιοχή: Synonyms: MISC MOLPATH MOLPATH.MISC Nom Pt Αίμα Αίμα/Ιστός Αναγνωριστικό Ιστός Μοριακή γενετική Περιοχή Χρωμόσωμα Χρωμοσωμική περιοχή |
| es-ES | Spanish (Spain) | Región cromosómica: |
| es-MX | Spanish (Mexico) | Región cromosómica: |
| fr-FR | French (France) | Chromosome région: |
| it-IT | Italian (Italy) | Regione cromosomica: Synonyms: Genetica molecolare Identificatore Miscellanea Miscellanea geni Patologia molecolare Punto nel tempo (episodio) Sangue Sangue o Tessuto Tessuto & |
| ko-KR | Korean (Korea, Republic Of) | 염색체 부위: |
| nl-NL | Dutch (Netherlands) | chromosoomgebied: Synonyms: molgen |
| pl-PL | Polish (Poland) | Region chromosomowy: Synonyms: diagnostyka molekularna wynik kategorialny |
| pt-BR | Portuguese (Brazil) | Região do cromossomo: Synonyms: Chromosomes; |
| ru-RU | Russian (Russian Federation) | Хромосома участок: Synonyms: Идентификатор Кровь Кровь или Ткань Номинальный; |
| tr-TR | Turkish (Turkey) | Kromozom bölgesi: |
| zh-CN | Chinese (China) | 染色体区域: Synonyms: 全血或组织; |